Wall clock time and date at job start Tue Mar 31 2020 12:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35336 * 125.69358 * 2 1 4 4 N 1.36184 * 107.13387 * 179.84647 * 3 2 1 5 5 C 1.36294 * 133.91866 * 180.10196 * 4 3 2 6 6 C 1.35472 * 120.53982 * 180.32102 * 5 4 3 7 7 N 1.32702 * 122.12068 * 0.02562 * 6 5 4 8 8 C 1.32416 * 121.17068 * 0.02562 * 7 6 5 9 9 C 1.47575 * 120.59459 * 180.02562 * 8 7 6 10 10 O 1.21638 * 119.99800 * 174.60975 * 9 8 7 11 11 N 1.34776 * 120.00238 * 354.60416 * 9 8 7 12 12 C 1.36672 * 119.99681 * 4.45331 * 11 9 8 13 13 H 1.08003 * 119.99493 * 313.74524 * 12 11 9 14 14 C 1.39165 * 120.00325 * 133.75488 * 12 11 9 15 15 N 1.31279 * 120.00432 * 173.18670 * 14 12 11 16 16 Si 1.86806 * 119.99782 * 353.18435 * 14 12 11 17 17 H 1.48497 * 109.46945 * 94.96375 * 16 14 12 18 18 H 1.48504 * 109.46929 * 214.96441 * 16 14 12 19 19 H 1.48498 * 109.47014 * 334.96380 * 16 14 12 20 20 C 1.46497 * 120.00259 * 184.44373 * 11 9 8 21 21 C 1.53000 * 109.47139 * 90.00229 * 20 11 9 22 22 C 1.50696 * 109.47023 * 179.97438 * 21 20 11 23 23 O 1.20829 * 120.00354 * 0.02562 * 22 21 20 24 24 O 1.34234 * 120.00083 * 180.02562 * 22 21 20 25 25 C 1.37531 * 106.99335 * 0.41095 * 4 3 2 26 26 N 1.31825 * 108.11847 * 359.74252 * 25 4 3 27 27 H 1.09006 * 109.46786 * 269.71211 * 1 2 3 28 28 H 1.09004 * 109.47380 * 149.71904 * 1 2 3 29 29 H 1.08998 * 109.47341 * 29.71326 * 1 2 3 30 30 H 1.07997 * 126.43590 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.72677 * 0.33679 * 5 4 3 32 32 H 1.07994 * 118.93913 * 180.02562 * 6 5 4 33 33 H 0.96997 * 120.00429 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47310 * 210.00892 * 20 11 9 35 35 H 1.08999 * 109.47072 * 330.00416 * 20 11 9 36 36 H 1.08998 * 109.47101 * 300.00270 * 21 20 11 37 37 H 1.08999 * 109.46986 * 60.00134 * 21 20 11 38 38 H 0.96695 * 117.00106 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0991 0.0000 4 7 3.5876 0.6657 0.0035 5 6 4.7963 1.2955 0.0069 6 6 5.9460 0.5788 0.0034 7 7 5.9502 -0.7482 -0.0039 8 6 4.8194 -1.4371 -0.0086 9 6 4.8389 -2.9127 -0.0161 10 8 3.7982 -3.5352 0.0786 11 7 6.0099 -3.5707 -0.1279 12 6 7.1860 -2.8747 -0.1427 13 1 7.2860 -1.9966 -0.7637 14 6 8.2547 -3.2974 0.6420 15 7 9.4242 -2.7119 0.5289 16 14 8.0251 -4.6981 1.8565 17 1 8.4431 -5.9750 1.2242 18 1 8.8544 -4.4482 3.0628 19 1 6.5952 -4.7843 2.2479 20 6 6.0220 -5.0318 -0.2334 21 6 5.9469 -5.4374 -1.7067 22 6 5.9600 -6.9404 -1.8152 23 8 6.0225 -7.6177 -0.8166 24 8 5.9023 -7.5268 -3.0213 25 6 3.5501 -0.7091 -0.0039 26 7 2.2864 -1.0847 -0.0058 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3634 -0.8875 -0.5182 29 1 -0.3634 0.8925 -0.5094 30 1 1.9652 2.1270 -0.0004 31 1 4.8379 2.3746 0.0126 32 1 6.8894 1.1044 0.0067 33 1 10.1690 -3.0063 1.0761 34 1 6.9418 -5.4200 0.2040 35 1 5.1646 -5.4417 0.3004 36 1 5.0271 -5.0491 -2.1441 37 1 6.8043 -5.0275 -2.2405 38 1 5.9131 -8.4935 -3.0404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607902933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:41 Heat of formation + Delta-G solvation = -14.414017 kcal Electronic energy + Delta-G solvation = -26668.625313 eV Core-core repulsion = 22706.281205 eV Total energy + Delta-G solvation = -3962.344108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.91480 -41.48365 -40.70718 -39.18102 -37.34868 -36.92868 -35.36340 -34.17538 -32.80298 -32.45992 -30.60848 -28.83046 -26.96492 -26.87760 -24.91913 -24.16532 -22.38473 -21.82018 -21.26188 -19.81919 -19.20892 -19.11050 -18.32438 -18.00579 -17.36320 -17.22138 -16.92275 -16.53240 -16.25112 -15.96036 -15.79923 -15.16517 -14.91023 -14.61897 -14.47315 -14.36738 -14.17570 -14.03848 -13.83521 -13.50235 -13.23290 -13.10237 -13.04242 -12.69629 -12.60517 -12.26238 -12.14254 -11.79982 -11.70350 -11.28154 -11.03678 -10.95807 -10.38359 -9.75948 -9.58364 -9.07870 -8.39605 -6.06940 -0.81076 0.30855 1.11634 1.18502 1.28596 1.38080 1.41054 1.70359 1.87262 1.92263 2.17219 2.42633 2.77011 2.98664 3.05736 3.36219 3.40179 3.74974 3.77585 3.82814 4.21617 4.24315 4.29085 4.33862 4.36202 4.51746 4.61214 4.80407 4.85795 4.89683 4.92837 5.10559 5.21947 5.43309 5.52980 5.63492 5.92463 6.09200 6.46851 6.71253 6.90498 6.94279 7.03735 7.33090 7.64925 8.69137 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.004974 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.759838 B = 5627.768091 C = 7053.117634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.024 3.976 3 C -0.071 4.071 4 N -0.357 5.357 5 C 0.042 3.958 6 C 0.006 3.994 7 N -0.393 5.393 8 C 0.143 3.857 9 C 0.521 3.479 10 O -0.587 6.587 11 N -0.448 5.448 12 C -0.299 4.299 13 H 0.128 0.872 14 C 0.044 3.956 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.280 1.280 20 C 0.112 3.888 21 C -0.118 4.118 22 C 0.498 3.502 23 O -0.552 6.552 24 O -0.503 6.503 25 C 0.167 3.833 26 N -0.492 5.492 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.240 0.760 31 H 0.230 0.770 32 H 0.208 0.792 33 H 0.278 0.722 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 9.331 -4.967 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.204 4.204 4 N -0.031 5.031 5 C -0.083 4.083 6 C -0.135 4.135 7 N -0.108 5.108 8 C -0.020 4.020 9 C 0.311 3.689 10 O -0.470 6.470 11 N -0.168 5.168 12 C -0.428 4.428 13 H 0.145 0.855 14 C -0.161 4.161 15 N -0.521 5.521 16 Si 0.731 3.269 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.206 1.206 20 C -0.011 4.011 21 C -0.157 4.157 22 C 0.341 3.659 23 O -0.443 6.443 24 O -0.316 6.316 25 C -0.081 4.081 26 N -0.214 5.214 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.256 0.744 31 H 0.246 0.754 32 H 0.225 0.775 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -8.645 8.230 -4.597 12.790 hybrid contribution 0.036 -0.479 0.927 1.044 sum -8.609 7.751 -3.670 12.151 Atomic orbital electron populations 1.20249 0.84107 1.04241 1.03638 1.22044 0.99001 0.87608 1.02253 1.23213 0.79050 1.02689 1.15407 1.43115 1.07830 1.07801 1.44317 1.23531 0.81546 1.02554 1.00680 1.23076 0.99543 0.89426 1.01493 1.69223 1.25604 1.09039 1.06934 1.21745 0.84482 0.94212 1.01534 1.17886 0.83964 0.85914 0.81153 1.90728 1.33060 1.68072 1.55144 1.43668 1.06063 1.04571 1.62474 1.19638 0.86890 1.11224 1.25008 0.85503 1.25684 0.95341 0.98218 0.96897 1.69578 1.01163 1.41657 1.39704 0.86525 0.78107 0.81442 0.80783 1.19180 1.21152 1.20592 1.21425 1.01610 0.82264 0.95781 1.21563 1.07415 0.88046 0.98653 1.23207 0.70305 0.91710 0.80635 1.90705 1.47628 1.66686 1.39302 1.84494 1.84742 1.30465 1.31932 1.22468 0.94213 0.82211 1.09180 1.70477 0.99004 1.31197 1.20771 0.89869 0.91935 0.87224 0.74421 0.75384 0.77542 0.91168 0.91876 0.91294 0.86700 0.85454 0.70877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 10.42 71.24 0.74 -0.53 16 2 C 0.02 0.70 7.07 41.62 0.29 1.00 16 3 C -0.07 -1.65 11.70 83.35 0.98 -0.67 16 4 N -0.36 -10.55 2.95 -347.21 -1.03 -11.57 16 5 C 0.04 0.94 11.00 83.36 0.92 1.86 16 6 C 0.01 0.16 11.01 83.92 0.92 1.09 16 7 N -0.39 -16.39 6.50 -181.44 -1.18 -17.57 16 8 C 0.14 6.54 6.86 43.63 0.30 6.84 16 9 C 0.52 26.65 7.62 86.71 0.66 27.31 16 10 O -0.59 -32.30 15.80 -4.15 -0.07 -32.36 16 11 N -0.45 -22.25 2.11 -639.14 -1.35 -23.60 16 12 C -0.30 -15.32 8.09 84.16 0.68 -14.64 16 13 H 0.13 6.75 6.11 -2.91 -0.02 6.73 16 14 C 0.04 2.28 5.47 85.00 0.46 2.75 16 15 N -0.88 -47.36 13.95 21.70 0.30 -47.06 16 16 Si 0.90 44.10 24.66 68.60 1.69 45.80 16 17 H -0.27 -12.64 6.93 99.48 0.69 -11.95 16 18 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.28 -14.51 6.75 99.48 0.67 -13.84 16 20 C 0.11 5.17 3.19 86.38 0.28 5.45 16 21 C -0.12 -4.40 6.13 29.85 0.18 -4.22 16 22 C 0.50 16.95 8.33 71.23 0.59 17.54 16 23 O -0.55 -22.35 16.74 21.95 0.37 -21.98 16 24 O -0.50 -12.45 13.42 -51.46 -0.69 -13.14 16 25 C 0.17 6.90 7.66 135.62 1.04 7.94 16 26 N -0.49 -20.62 10.75 -177.71 -1.91 -22.53 16 27 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.24 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.23 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.21 4.56 8.06 -2.91 -0.02 4.54 16 33 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.06 3.04 3.25 -2.39 -0.01 3.03 16 35 H 0.07 3.37 7.32 -2.39 -0.02 3.36 16 36 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 37 H 0.13 4.45 8.14 -2.39 -0.02 4.43 16 38 H 0.43 6.25 9.10 -74.06 -0.67 5.58 16 Total: -1.00 -81.73 331.18 4.61 -77.13 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.41 Total: 15.18 kcal Atomic # 6 Polarization: 43.66 SS G_CDS: 8.05 Total: 51.71 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.16 Total: -122.33 kcal Atomic # 8 Polarization: -67.10 SS G_CDS: -0.39 Total: -67.48 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.69 Total: 45.80 kcal Total: -81.73 4.61 -77.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607902933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.712 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds