Wall clock time and date at job start Tue Mar 31 2020 12:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35998 * 126.35703 * 2 1 4 4 N 1.30293 * 110.04323 * 180.02562 * 3 2 1 5 5 C 1.34635 * 109.66509 * 0.02562 * 4 3 2 6 6 C 1.37936 * 126.36089 * 180.02562 * 2 1 3 7 7 N 1.32145 * 133.79990 * 359.96256 * 6 2 1 8 8 C 1.31753 * 121.96877 * 180.02562 * 7 6 2 9 9 C 1.38277 * 121.55647 * 359.97438 * 8 7 6 10 10 C 1.39744 * 119.36608 * 0.02562 * 9 8 7 11 11 C 1.47597 * 121.08120 * 179.97438 * 10 9 8 12 12 O 1.21621 * 120.00036 * 147.49498 * 11 10 9 13 13 N 1.34773 * 120.00332 * 327.49942 * 11 10 9 14 14 C 1.36780 * 119.99667 * 8.56696 * 13 11 10 15 15 H 1.08000 * 120.00055 * 320.11806 * 14 13 11 16 16 C 1.39109 * 119.99795 * 140.11593 * 14 13 11 17 17 N 1.31329 * 119.99800 * 161.44985 * 16 14 13 18 18 Si 1.86800 * 120.00104 * 341.45590 * 16 14 13 19 19 H 1.48500 * 109.47160 * 95.86609 * 18 16 14 20 20 H 1.48501 * 109.46991 * 215.86858 * 18 16 14 21 21 H 1.48496 * 109.46872 * 335.86443 * 18 16 14 22 22 C 1.46494 * 120.00319 * 188.57019 * 13 11 10 23 23 C 1.52996 * 109.47311 * 89.99748 * 22 13 11 24 24 C 1.50701 * 109.47446 * 179.97438 * 23 22 13 25 25 O 1.20830 * 119.99823 * 0.02562 * 24 23 22 26 26 O 1.34234 * 120.00261 * 180.02562 * 24 23 22 27 27 H 1.08994 * 109.47215 * 269.95578 * 1 2 3 28 28 H 1.09004 * 109.46948 * 29.95722 * 1 2 3 29 29 H 1.09000 * 109.46683 * 149.95161 * 1 2 3 30 30 H 1.08001 * 124.97934 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.21958 * 180.27782 * 8 7 6 32 32 H 1.07999 * 120.31772 * 180.02562 * 9 8 7 33 33 H 0.97000 * 119.99941 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47518 * 209.99737 * 22 13 11 35 35 H 1.08997 * 109.47195 * 329.99567 * 22 13 11 36 36 H 1.08996 * 109.47274 * 300.00192 * 23 22 13 37 37 H 1.09006 * 109.47070 * 60.00078 * 23 22 13 38 38 H 0.96696 * 116.99894 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0952 0.0000 4 7 3.5217 0.7293 -0.0005 5 6 3.6004 -0.6148 -0.0015 6 6 2.2828 -1.1108 -0.0005 7 7 2.0570 -2.4128 -0.0005 8 6 3.0391 -3.2911 -0.0005 9 6 4.3640 -2.8953 -0.0012 10 6 4.6719 -1.5322 -0.0012 11 6 6.0728 -1.0675 -0.0013 12 8 6.3703 -0.0329 -0.5674 13 7 7.0224 -1.7896 0.6257 14 6 6.7268 -3.0342 1.1099 15 1 5.7748 -3.2163 1.5862 16 6 7.6525 -4.0656 0.9886 17 7 7.5489 -5.1333 1.7462 18 14 9.0428 -3.9317 -0.2518 19 1 10.2614 -3.4185 0.4241 20 1 9.3232 -5.2715 -0.8275 21 1 8.6490 -2.9988 -1.3379 22 6 8.3712 -1.2415 0.7889 23 6 8.4514 -0.4678 2.1063 24 6 9.8390 0.0955 2.2745 25 8 10.6776 -0.1012 1.4272 26 8 10.1433 0.8158 3.3656 27 1 -0.3633 -0.0008 1.0276 28 1 -0.3633 0.8904 -0.5132 29 1 -0.3633 -0.8896 -0.5146 30 1 1.9256 2.1185 0.0004 31 1 2.8037 -4.3452 -0.0051 32 1 5.1532 -3.6325 -0.0016 33 1 8.1945 -5.8523 1.6619 34 1 9.0954 -2.0560 0.8012 35 1 8.5934 -0.5703 -0.0407 36 1 7.7272 0.3467 2.0941 37 1 8.2292 -1.1391 2.9360 38 1 11.0460 1.1566 3.4288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608135136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:10 Heat of formation + Delta-G solvation = -5.956215 kcal Electronic energy + Delta-G solvation = -26685.761924 eV Core-core repulsion = 22723.784575 eV Total energy + Delta-G solvation = -3961.977350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02560 -40.02917 -39.08739 -37.60046 -35.96475 -35.21650 -34.17012 -32.51282 -31.84597 -30.35266 -29.31365 -27.02940 -25.34309 -25.22052 -23.51181 -22.43195 -21.40198 -20.57889 -19.11421 -17.98985 -17.78376 -17.33923 -16.83676 -16.40487 -16.21751 -15.87006 -15.57742 -14.95298 -14.92968 -14.32856 -13.90730 -13.82280 -13.56415 -13.36696 -13.17056 -12.80498 -12.74443 -12.55787 -12.22274 -12.05494 -11.96692 -11.85967 -11.30166 -11.14176 -10.89910 -10.50030 -10.33324 -10.31336 -10.07892 -9.93804 -9.36708 -9.13503 -8.52931 -8.21587 -8.11647 -7.88230 -6.61542 -4.25500 0.96799 1.71321 2.50610 2.54048 3.04391 3.10525 3.20090 3.22944 3.30073 3.69640 4.03913 4.17371 4.40538 4.45703 4.56420 4.69389 4.80127 5.08537 5.18102 5.32320 5.34858 5.41304 5.47866 5.52193 5.75687 5.84432 6.04270 6.09513 6.24603 6.36337 6.47113 6.58748 6.70248 6.72906 7.13166 7.17837 7.22024 7.88639 8.06442 8.10512 8.15202 8.23644 8.77097 9.16146 9.49693 10.44950 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.004868 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.357490 B = 5749.931160 C = 7156.372219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.491 5.491 3 C 0.253 3.747 4 N -0.466 5.466 5 C 0.041 3.959 6 C 0.222 3.778 7 N -0.486 5.486 8 C 0.124 3.876 9 C -0.136 4.136 10 C -0.008 4.008 11 C 0.526 3.474 12 O -0.563 6.563 13 N -0.457 5.457 14 C -0.361 4.361 15 H 0.118 0.882 16 C 0.072 3.928 17 N -0.849 5.849 18 Si 0.869 3.131 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.257 1.257 22 C 0.115 3.885 23 C -0.124 4.124 24 C 0.485 3.515 25 O -0.519 6.519 26 O -0.519 6.519 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.216 0.784 31 H 0.166 0.834 32 H 0.189 0.811 33 H 0.279 0.721 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 6.593 0.744 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.186 5.186 3 C -0.033 4.033 4 N -0.183 5.183 5 C -0.082 4.082 6 C -0.012 4.012 7 N -0.200 5.200 8 C -0.041 4.041 9 C -0.159 4.159 10 C -0.021 4.021 11 C 0.315 3.685 12 O -0.445 6.445 13 N -0.178 5.178 14 C -0.488 4.488 15 H 0.135 0.865 16 C -0.137 4.137 17 N -0.483 5.483 18 Si 0.696 3.304 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.181 1.181 22 C -0.008 4.008 23 C -0.163 4.163 24 C 0.328 3.672 25 O -0.408 6.408 26 O -0.331 6.331 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.233 0.767 31 H 0.183 0.817 32 H 0.206 0.794 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -9.002 7.001 0.258 11.407 hybrid contribution 1.375 -0.118 -0.289 1.410 sum -7.627 6.883 -0.031 10.274 Atomic orbital electron populations 1.21895 0.76043 1.04344 1.03216 1.44942 1.07162 1.04749 1.61712 1.25455 0.85090 0.92924 0.99804 1.70213 1.17399 1.11312 1.19415 1.19264 0.92251 0.90900 1.05774 1.18846 0.88753 0.88068 1.05575 1.66122 1.38552 0.99329 1.16027 1.22600 0.87763 0.97977 0.95795 1.23402 0.99027 0.96508 0.96926 1.19558 0.92479 0.91901 0.98150 1.17941 0.85012 0.85021 0.80497 1.90711 1.82115 1.26083 1.45550 1.43469 1.08125 1.15906 1.50264 1.19336 1.06767 0.83786 1.38865 0.86467 1.25330 0.97666 0.95025 0.95694 1.69685 1.36295 1.08124 1.34195 0.87013 0.82357 0.77958 0.83113 1.19460 1.21141 1.18079 1.21408 0.86162 0.97915 0.95320 1.21768 0.90018 1.01858 1.02650 1.23677 0.91341 0.74311 0.77897 1.90702 1.50799 1.56640 1.42632 1.84581 1.38350 1.65426 1.44736 0.91054 0.89725 0.89596 0.76728 0.81665 0.79397 0.91072 0.90577 0.89771 0.87494 0.86605 0.73852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.20 59.85 0.67 1.42 16 2 N -0.49 -6.84 3.20 -124.98 -0.40 -7.24 16 3 C 0.25 3.52 12.50 -89.67 -1.12 2.40 16 4 N -0.47 -9.13 11.06 -11.87 -0.13 -9.27 16 5 C 0.04 0.85 6.86 -84.61 -0.58 0.27 16 6 C 0.22 4.02 8.02 -155.64 -1.25 2.77 16 7 N -0.49 -8.55 10.35 -12.32 -0.13 -8.68 16 8 C 0.12 2.08 11.14 -17.57 -0.20 1.89 16 9 C -0.14 -2.64 7.79 -39.00 -0.30 -2.95 16 10 C -0.01 -0.17 5.62 -104.45 -0.59 -0.76 16 11 C 0.53 12.66 7.42 -12.44 -0.09 12.57 16 12 O -0.56 -14.77 16.28 5.26 0.09 -14.69 16 13 N -0.46 -10.67 2.14 -115.98 -0.25 -10.92 16 14 C -0.36 -8.57 6.88 -15.02 -0.10 -8.67 16 15 H 0.12 2.86 5.93 -52.49 -0.31 2.55 16 16 C 0.07 1.76 5.35 -17.44 -0.09 1.66 16 17 N -0.85 -21.37 13.95 55.50 0.77 -20.60 16 18 Si 0.87 19.89 24.86 -169.99 -4.23 15.67 16 19 H -0.27 -6.20 6.75 56.52 0.38 -5.82 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.12 2.56 3.53 -4.05 -0.01 2.54 16 23 C -0.12 -2.33 6.13 -27.88 -0.17 -2.50 16 24 C 0.49 8.51 8.33 36.01 0.30 8.81 16 25 O -0.52 -10.55 16.74 -18.75 -0.31 -10.86 16 26 O -0.52 -7.10 13.42 -39.27 -0.53 -7.63 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.22 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.19 3.81 5.29 -52.49 -0.28 3.53 16 33 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.08 1.76 3.26 -51.93 -0.17 1.59 16 35 H 0.08 1.94 7.28 -51.93 -0.38 1.57 16 36 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 37 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 38 H 0.40 3.54 9.10 45.56 0.41 3.95 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -34.54 329.75 -6.52 -41.06 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -2.84 Total: 8.74 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: -3.54 Total: 19.44 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.13 Total: -56.69 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.76 Total: -33.18 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.23 Total: 15.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.54 -6.52 -41.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608135136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.104 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds