Wall clock time and date at job start Tue Mar 31 2020 12:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35998 * 126.35703 * 2 1 4 4 N 1.30293 * 110.04323 * 180.02562 * 3 2 1 5 5 C 1.34635 * 109.66509 * 0.02562 * 4 3 2 6 6 C 1.37936 * 126.36089 * 180.02562 * 2 1 3 7 7 N 1.32145 * 133.79990 * 359.96256 * 6 2 1 8 8 C 1.31753 * 121.96877 * 180.02562 * 7 6 2 9 9 C 1.38277 * 121.55647 * 359.97438 * 8 7 6 10 10 C 1.39744 * 119.36608 * 0.02562 * 9 8 7 11 11 C 1.47597 * 121.08120 * 179.97438 * 10 9 8 12 12 O 1.21621 * 120.00036 * 147.49498 * 11 10 9 13 13 N 1.34773 * 120.00332 * 327.49942 * 11 10 9 14 14 C 1.36780 * 119.99667 * 8.56696 * 13 11 10 15 15 H 1.08000 * 120.00055 * 320.11806 * 14 13 11 16 16 C 1.39109 * 119.99795 * 140.11593 * 14 13 11 17 17 N 1.31329 * 119.99800 * 161.44985 * 16 14 13 18 18 Si 1.86800 * 120.00104 * 341.45590 * 16 14 13 19 19 H 1.48500 * 109.47160 * 95.86609 * 18 16 14 20 20 H 1.48501 * 109.46991 * 215.86858 * 18 16 14 21 21 H 1.48496 * 109.46872 * 335.86443 * 18 16 14 22 22 C 1.46494 * 120.00319 * 188.57019 * 13 11 10 23 23 C 1.52996 * 109.47311 * 89.99748 * 22 13 11 24 24 C 1.50701 * 109.47446 * 179.97438 * 23 22 13 25 25 O 1.20830 * 119.99823 * 0.02562 * 24 23 22 26 26 O 1.34234 * 120.00261 * 180.02562 * 24 23 22 27 27 H 1.08994 * 109.47215 * 269.95578 * 1 2 3 28 28 H 1.09004 * 109.46948 * 29.95722 * 1 2 3 29 29 H 1.09000 * 109.46683 * 149.95161 * 1 2 3 30 30 H 1.08001 * 124.97934 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.21958 * 180.27782 * 8 7 6 32 32 H 1.07999 * 120.31772 * 180.02562 * 9 8 7 33 33 H 0.97000 * 119.99941 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47518 * 209.99737 * 22 13 11 35 35 H 1.08997 * 109.47195 * 329.99567 * 22 13 11 36 36 H 1.08996 * 109.47274 * 300.00192 * 23 22 13 37 37 H 1.09006 * 109.47070 * 60.00078 * 23 22 13 38 38 H 0.96696 * 116.99894 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0952 0.0000 4 7 3.5217 0.7293 -0.0005 5 6 3.6004 -0.6148 -0.0015 6 6 2.2828 -1.1108 -0.0005 7 7 2.0570 -2.4128 -0.0005 8 6 3.0391 -3.2911 -0.0005 9 6 4.3640 -2.8953 -0.0012 10 6 4.6719 -1.5322 -0.0012 11 6 6.0728 -1.0675 -0.0013 12 8 6.3703 -0.0329 -0.5674 13 7 7.0224 -1.7896 0.6257 14 6 6.7268 -3.0342 1.1099 15 1 5.7748 -3.2163 1.5862 16 6 7.6525 -4.0656 0.9886 17 7 7.5489 -5.1333 1.7462 18 14 9.0428 -3.9317 -0.2518 19 1 10.2614 -3.4185 0.4241 20 1 9.3232 -5.2715 -0.8275 21 1 8.6490 -2.9988 -1.3379 22 6 8.3712 -1.2415 0.7889 23 6 8.4514 -0.4678 2.1063 24 6 9.8390 0.0955 2.2745 25 8 10.6776 -0.1012 1.4272 26 8 10.1433 0.8158 3.3656 27 1 -0.3633 -0.0008 1.0276 28 1 -0.3633 0.8904 -0.5132 29 1 -0.3633 -0.8896 -0.5146 30 1 1.9256 2.1185 0.0004 31 1 2.8037 -4.3452 -0.0051 32 1 5.1532 -3.6325 -0.0016 33 1 8.1945 -5.8523 1.6619 34 1 9.0954 -2.0560 0.8012 35 1 8.5934 -0.5703 -0.0407 36 1 7.7272 0.3467 2.0941 37 1 8.2292 -1.1391 2.9360 38 1 11.0460 1.1566 3.4288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608135136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:09 Heat of formation + Delta-G solvation = -30.203365 kcal Electronic energy + Delta-G solvation = -26686.813360 eV Core-core repulsion = 22723.784575 eV Total energy + Delta-G solvation = -3963.028785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30609 -41.50141 -40.74965 -39.01545 -37.37303 -36.97407 -35.38327 -34.29413 -33.43272 -31.90774 -30.65704 -27.96606 -27.12783 -26.85405 -24.93781 -23.80678 -22.78802 -22.05137 -20.78080 -19.47328 -19.14902 -18.79450 -18.26634 -17.99882 -17.69939 -17.10177 -17.00222 -16.58238 -16.45202 -15.89078 -15.59085 -15.26108 -14.85417 -14.77773 -14.45581 -14.37045 -14.16445 -13.97144 -13.63743 -13.54293 -13.34638 -13.28052 -12.95407 -12.71122 -12.62616 -12.11183 -11.84963 -11.73265 -11.71251 -11.51936 -11.23033 -10.84413 -10.13330 -9.79406 -9.54360 -9.43154 -8.52656 -6.16544 -0.44408 0.29863 1.09134 1.19624 1.32076 1.42078 1.45758 1.72562 1.87721 2.05081 2.15666 2.56211 2.80494 3.02687 3.22666 3.46863 3.73159 3.74857 3.81630 3.97226 4.09378 4.21630 4.28473 4.46679 4.50228 4.51222 4.59568 4.70800 4.77482 4.80694 4.99629 5.19444 5.28758 5.34100 5.50507 5.74593 6.00894 6.09351 6.18688 6.85230 6.86574 6.89225 6.92179 7.28975 7.64479 8.56881 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.004868 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.357490 B = 5749.931160 C = 7156.372219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.483 5.483 3 C 0.285 3.715 4 N -0.530 5.530 5 C 0.017 3.983 6 C 0.209 3.791 7 N -0.477 5.477 8 C 0.126 3.874 9 C -0.134 4.134 10 C -0.049 4.049 11 C 0.522 3.478 12 O -0.595 6.595 13 N -0.462 5.462 14 C -0.349 4.349 15 H 0.111 0.889 16 C 0.054 3.946 17 N -0.873 5.873 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.277 1.277 22 C 0.113 3.887 23 C -0.118 4.118 24 C 0.498 3.502 25 O -0.551 6.551 26 O -0.503 6.503 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.275 0.725 31 H 0.204 0.796 32 H 0.175 0.825 33 H 0.284 0.716 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 7.634 1.357 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.176 5.176 3 C -0.001 4.001 4 N -0.249 5.249 5 C -0.106 4.106 6 C -0.027 4.027 7 N -0.191 5.191 8 C -0.040 4.040 9 C -0.156 4.156 10 C -0.061 4.061 11 C 0.313 3.687 12 O -0.479 6.479 13 N -0.182 5.182 14 C -0.476 4.476 15 H 0.128 0.872 16 C -0.153 4.153 17 N -0.508 5.508 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.010 4.010 23 C -0.157 4.157 24 C 0.341 3.659 25 O -0.442 6.442 26 O -0.317 6.317 27 H 0.106 0.894 28 H 0.145 0.855 29 H 0.100 0.900 30 H 0.290 0.710 31 H 0.220 0.780 32 H 0.192 0.808 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -11.270 8.043 0.905 13.875 hybrid contribution 1.917 -0.269 -0.464 1.990 sum -9.353 7.774 0.440 12.170 Atomic orbital electron populations 1.22329 0.72468 1.06327 1.04913 1.45351 1.09063 1.03184 1.60012 1.26591 0.83589 0.94829 0.95049 1.70163 1.20751 1.10970 1.23008 1.19486 0.93067 0.91809 1.06200 1.19152 0.88881 0.88965 1.05680 1.66274 1.38246 0.99251 1.15282 1.23083 0.86487 0.99575 0.94807 1.23255 1.00038 0.95244 0.97087 1.19581 0.91617 0.93411 1.01529 1.18400 0.86141 0.84549 0.79658 1.90657 1.82918 1.27408 1.46897 1.43547 1.08488 1.15909 1.50301 1.19223 1.06370 0.83988 1.37986 0.87226 1.25527 0.98532 0.94980 0.96265 1.69691 1.37243 1.08699 1.35193 0.86498 0.81196 0.77641 0.81614 1.19799 1.20116 1.20175 1.21350 0.85400 0.97581 0.96678 1.21563 0.91441 1.01825 1.00859 1.23209 0.90295 0.74152 0.78211 1.90701 1.51468 1.58045 1.43970 1.84499 1.40501 1.64269 1.42423 0.89441 0.85511 0.89952 0.71004 0.77958 0.80760 0.90596 0.91514 0.91423 0.87171 0.85917 0.70870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 11.20 127.77 1.43 2.44 16 2 N -0.48 -11.94 3.20 -549.32 -1.76 -13.70 16 3 C 0.28 7.05 12.50 180.02 2.25 9.31 16 4 N -0.53 -20.49 11.06 -191.47 -2.12 -22.61 16 5 C 0.02 0.71 6.86 40.03 0.27 0.99 16 6 C 0.21 7.29 8.02 133.91 1.07 8.36 16 7 N -0.48 -16.04 10.35 -192.88 -2.00 -18.04 16 8 C 0.13 4.13 11.14 84.71 0.94 5.07 16 9 C -0.13 -5.31 7.79 22.64 0.18 -5.13 16 10 C -0.05 -2.20 5.62 -19.75 -0.11 -2.31 16 11 C 0.52 26.24 7.42 86.71 0.64 26.88 16 12 O -0.59 -32.70 16.28 -4.10 -0.07 -32.76 16 13 N -0.46 -22.39 2.14 -639.11 -1.37 -23.76 16 14 C -0.35 -17.02 6.88 84.13 0.58 -16.44 16 15 H 0.11 5.51 5.93 -2.91 -0.02 5.49 16 16 C 0.05 2.68 5.35 84.98 0.45 3.13 16 17 N -0.87 -44.18 13.95 21.69 0.30 -43.88 16 18 Si 0.90 41.79 24.86 68.60 1.71 43.50 16 19 H -0.27 -12.62 6.75 99.48 0.67 -11.95 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 22 C 0.11 5.19 3.53 86.38 0.30 5.49 16 23 C -0.12 -4.50 6.13 29.85 0.18 -4.31 16 24 C 0.50 17.20 8.33 71.24 0.59 17.79 16 25 O -0.55 -22.39 16.74 21.95 0.37 -22.02 16 26 O -0.50 -12.75 13.42 -51.46 -0.69 -13.44 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.27 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.20 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.18 7.31 5.29 -2.91 -0.02 7.30 16 33 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 34 H 0.07 3.17 3.26 -2.38 -0.01 3.16 16 35 H 0.07 3.29 7.28 -2.39 -0.02 3.27 16 36 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 37 H 0.12 4.48 8.14 -2.38 -0.02 4.46 16 38 H 0.43 6.41 9.10 -74.06 -0.67 5.74 16 Total: -1.00 -78.65 329.75 3.61 -75.03 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.44 Total: 20.42 kcal Atomic # 6 Polarization: 42.47 SS G_CDS: 8.80 Total: 51.27 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -6.94 Total: -121.99 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -0.39 Total: -68.23 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.71 Total: 43.50 kcal Total: -78.65 3.61 -75.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608135136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.831 kcal (2) G-P(sol) polarization free energy of solvation -78.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds