Wall clock time and date at job start Tue Mar 31 2020 12:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 120.00482 * 2 1 4 4 H 1.48501 * 109.47025 * 270.00039 * 3 2 1 5 5 H 1.48498 * 109.47078 * 29.99958 * 3 2 1 6 6 H 1.48504 * 109.47440 * 149.99667 * 3 2 1 7 7 C 1.38661 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99752 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00333 * 185.05779 * 9 7 2 11 11 C 1.38880 * 120.06375 * 354.46077 * 10 9 7 12 12 C 1.38105 * 119.92921 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06612 * 0.03080 * 12 11 10 14 14 C 1.50702 * 119.92728 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47662 * 89.99897 * 14 13 12 16 16 N 1.28784 * 125.45315 * 90.01756 * 15 14 13 17 17 N 1.28993 * 108.72649 * 179.97438 * 16 15 14 18 18 C 1.33319 * 107.35637 * 0.02562 * 17 16 15 19 19 C 1.50693 * 126.55029 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47471 * 90.02621 * 19 18 17 21 21 C 1.50693 * 109.47471 * 180.02562 * 20 19 18 22 22 O 1.20819 * 119.99998 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00132 * 179.97438 * 21 20 19 24 24 N 1.28888 * 125.44761 * 269.98212 * 15 14 13 25 25 C 1.38299 * 120.14109 * 0.24444 * 13 12 11 26 26 C 1.38099 * 120.06875 * 359.45639 * 25 13 12 27 27 H 0.97000 * 119.99631 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03611 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96308 * 180.02562 * 12 11 10 30 30 H 1.09000 * 109.47084 * 329.98896 * 14 13 12 31 31 H 1.09007 * 109.46791 * 209.99568 * 14 13 12 32 32 H 1.08996 * 109.47404 * 210.02800 * 19 18 17 33 33 H 1.09001 * 109.47204 * 330.02724 * 19 18 17 34 34 H 1.09005 * 109.46729 * 300.00355 * 20 19 18 35 35 H 1.09001 * 109.46822 * 59.99869 * 20 19 18 36 36 H 0.96696 * 117.00484 * 180.02562 * 23 21 20 37 37 H 1.08007 * 119.96559 * 179.70299 * 25 13 12 38 38 H 1.08002 * 120.03733 * 180.27072 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4570 -3.4396 0.0952 12 6 4.2021 -4.5973 0.2039 13 6 3.5682 -5.8205 0.3244 14 6 4.3843 -7.0819 0.4422 15 7 4.6550 -7.3584 1.8552 16 7 3.9113 -8.0648 2.6339 17 7 4.4518 -8.0983 3.8046 18 6 5.5748 -7.3824 3.7448 19 6 6.5433 -7.1361 4.8728 20 6 7.6064 -8.2364 4.8817 21 6 8.5745 -7.9905 6.0100 22 8 8.4288 -7.0337 6.7333 23 8 9.5980 -8.8350 6.2123 24 7 5.6759 -6.9341 2.5177 25 6 2.1869 -5.8891 0.3315 26 6 1.4362 -4.7345 0.2294 27 1 -0.4849 0.8401 -0.0004 28 1 3.9525 -2.4846 0.0006 29 1 5.2809 -4.5472 0.1946 30 1 5.3269 -6.9558 -0.0905 31 1 3.8306 -7.9147 0.0087 32 1 7.0239 -6.1677 4.7342 33 1 6.0058 -7.1426 5.8211 34 1 7.1257 -9.2049 5.0203 35 1 8.1438 -8.2299 3.9334 36 1 10.1924 -8.6362 6.9486 37 1 1.6948 -6.8464 0.4209 38 1 0.3576 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:59 Heat of formation + Delta-G solvation = 27.602654 kcal Electronic energy + Delta-G solvation = -24715.779604 eV Core-core repulsion = 20755.257476 eV Total energy + Delta-G solvation = -3960.522128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.21765 -40.59169 -39.29216 -37.17670 -36.62127 -35.33467 -34.15053 -32.62887 -32.18982 -30.47754 -30.26073 -27.07926 -26.19760 -25.30033 -23.09391 -22.54847 -22.11265 -21.10974 -20.82578 -18.52338 -18.20084 -17.58288 -17.36146 -17.11347 -16.63607 -16.49811 -15.00935 -14.81014 -14.64052 -14.56594 -14.16673 -13.86845 -13.78421 -13.71939 -13.45643 -13.10712 -12.89592 -12.61332 -12.34961 -12.05889 -11.89247 -11.75470 -11.54860 -11.45793 -11.41023 -11.02204 -10.98225 -10.86182 -10.78964 -10.73419 -10.55092 -9.96959 -9.53452 -9.01393 -8.40561 -7.50023 -6.62499 -4.20915 1.32962 1.64290 1.83859 2.03637 2.11069 2.47058 2.72503 3.03838 3.05504 3.10227 3.83262 3.90468 4.25570 4.36397 4.37849 4.63276 4.85228 4.89220 4.93770 4.97414 5.06841 5.14442 5.17430 5.47361 5.50115 5.57891 5.64017 5.79018 5.88671 6.00963 6.12843 6.19443 6.30400 6.45383 6.66873 6.83386 6.99266 7.11050 7.23931 7.50602 7.57691 7.81825 8.48505 8.82213 9.47918 10.54355 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.002514 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.500907 B =11136.798010 C =12418.379617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.166 6.166 10 C 0.167 3.833 11 C -0.240 4.240 12 C -0.035 4.035 13 C -0.240 4.240 14 C 0.185 3.815 15 N -0.120 5.120 16 N -0.061 5.061 17 N -0.290 5.290 18 C 0.152 3.848 19 C -0.007 4.007 20 C -0.108 4.108 21 C 0.484 3.516 22 O -0.512 6.512 23 O -0.518 6.518 24 N -0.300 5.300 25 C -0.041 4.041 26 C -0.197 4.197 27 H 0.273 0.727 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.412 0.588 37 H 0.117 0.883 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.222 -15.552 4.808 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.068 6.068 10 C 0.111 3.889 11 C -0.259 4.259 12 C -0.055 4.055 13 C -0.243 4.243 14 C 0.068 3.932 15 N -0.033 5.033 16 N -0.053 5.053 17 N -0.161 5.161 18 C -0.130 4.130 19 C -0.047 4.047 20 C -0.147 4.147 21 C 0.326 3.674 22 O -0.400 6.400 23 O -0.330 6.330 24 N -0.151 5.151 25 C -0.060 4.060 26 C -0.216 4.216 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.271 0.729 37 H 0.135 0.865 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.906 -15.378 4.295 21.173 hybrid contribution 1.209 1.256 0.629 1.853 sum 15.115 -14.122 4.924 21.263 Atomic orbital electron populations 1.70035 1.06077 1.28149 1.44492 1.25370 0.95907 0.99085 0.96074 0.85660 0.79000 0.79643 0.78886 1.19659 1.20052 1.19012 1.21408 0.91975 0.80593 1.53071 0.88734 1.83973 1.34707 1.11677 1.76396 1.19478 0.90353 0.88046 0.91001 1.21144 0.93740 0.98958 1.12063 1.20636 0.98565 0.91430 0.94819 1.18980 0.93608 0.92808 1.18884 1.21055 1.02130 0.98471 0.71543 1.50774 1.10876 1.28469 1.13191 1.78924 1.18526 1.11841 0.96039 1.75784 1.07648 1.19905 1.12786 1.25226 0.96479 0.98304 0.93031 1.19577 0.92082 0.99331 0.93748 1.21279 0.94684 1.02150 0.96599 1.23307 0.79983 0.79339 0.84791 1.90764 1.72866 1.29604 1.46762 1.84526 1.39508 1.54292 1.54686 1.74621 1.12078 1.22190 1.06224 1.20545 0.92438 0.97282 0.95772 1.20208 0.99859 0.90090 1.11446 0.91670 0.85150 0.86996 0.86801 0.86566 0.87941 0.87698 0.86896 0.87058 0.72946 0.86463 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.26 13.67 55.48 0.76 -23.50 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 19.82 29.55 -169.99 -5.02 14.79 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.10 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.56 9.76 0.06 0.00 -4.56 16 10 C 0.17 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.24 -4.92 9.17 -39.39 -0.36 -5.28 16 12 C -0.04 -0.60 9.69 -39.61 -0.38 -0.98 16 13 C -0.24 -3.69 5.47 -104.58 -0.57 -4.26 16 14 C 0.19 2.15 6.73 -5.19 -0.03 2.12 16 15 N -0.12 -1.68 3.98 -11.71 -0.05 -1.73 16 16 N -0.06 -0.93 13.25 60.35 0.80 -0.13 16 17 N -0.29 -4.39 12.50 32.44 0.41 -3.99 16 18 C 0.15 2.01 7.62 -156.63 -1.19 0.82 16 19 C -0.01 -0.07 5.13 -27.89 -0.14 -0.21 16 20 C -0.11 -0.79 5.79 -27.89 -0.16 -0.96 16 21 C 0.48 3.92 8.33 36.00 0.30 4.22 16 22 O -0.51 -5.82 16.74 -18.74 -0.31 -6.14 16 23 O -0.52 -3.06 13.42 -39.26 -0.53 -3.58 16 24 N -0.30 -4.23 12.13 32.46 0.39 -3.83 16 25 C -0.04 -0.68 9.69 -39.61 -0.38 -1.07 16 26 C -0.20 -3.94 9.99 -39.40 -0.39 -4.34 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.12 1.05 8.08 -51.92 -0.42 0.63 16 32 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.41 0.78 9.10 45.56 0.41 1.20 16 37 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -33.91 346.65 -4.80 -38.72 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.08 Total: 4.39 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.39 Total: -15.67 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 2.31 Total: -33.18 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.84 Total: -14.28 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.91 -4.80 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.320 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds