Wall clock time and date at job start Tue Mar 31 2020 12:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 120.00482 * 2 1 4 4 H 1.48501 * 109.47025 * 270.00039 * 3 2 1 5 5 H 1.48498 * 109.47078 * 29.99958 * 3 2 1 6 6 H 1.48504 * 109.47440 * 149.99667 * 3 2 1 7 7 C 1.38661 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99752 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00333 * 185.05779 * 9 7 2 11 11 C 1.38880 * 120.06375 * 354.46077 * 10 9 7 12 12 C 1.38105 * 119.92921 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06612 * 0.03080 * 12 11 10 14 14 C 1.50702 * 119.92728 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47662 * 89.99897 * 14 13 12 16 16 N 1.28784 * 125.45315 * 90.01756 * 15 14 13 17 17 N 1.28993 * 108.72649 * 179.97438 * 16 15 14 18 18 C 1.33319 * 107.35637 * 0.02562 * 17 16 15 19 19 C 1.50693 * 126.55029 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47471 * 90.02621 * 19 18 17 21 21 C 1.50693 * 109.47471 * 180.02562 * 20 19 18 22 22 O 1.20819 * 119.99998 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00132 * 179.97438 * 21 20 19 24 24 N 1.28888 * 125.44761 * 269.98212 * 15 14 13 25 25 C 1.38299 * 120.14109 * 0.24444 * 13 12 11 26 26 C 1.38099 * 120.06875 * 359.45639 * 25 13 12 27 27 H 0.97000 * 119.99631 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03611 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96308 * 180.02562 * 12 11 10 30 30 H 1.09000 * 109.47084 * 329.98896 * 14 13 12 31 31 H 1.09007 * 109.46791 * 209.99568 * 14 13 12 32 32 H 1.08996 * 109.47404 * 210.02800 * 19 18 17 33 33 H 1.09001 * 109.47204 * 330.02724 * 19 18 17 34 34 H 1.09005 * 109.46729 * 300.00355 * 20 19 18 35 35 H 1.09001 * 109.46822 * 59.99869 * 20 19 18 36 36 H 0.96696 * 117.00484 * 180.02562 * 23 21 20 37 37 H 1.08007 * 119.96559 * 179.70299 * 25 13 12 38 38 H 1.08002 * 120.03733 * 180.27072 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4570 -3.4396 0.0952 12 6 4.2021 -4.5973 0.2039 13 6 3.5682 -5.8205 0.3244 14 6 4.3843 -7.0819 0.4422 15 7 4.6550 -7.3584 1.8552 16 7 3.9113 -8.0648 2.6339 17 7 4.4518 -8.0983 3.8046 18 6 5.5748 -7.3824 3.7448 19 6 6.5433 -7.1361 4.8728 20 6 7.6064 -8.2364 4.8817 21 6 8.5745 -7.9905 6.0100 22 8 8.4288 -7.0337 6.7333 23 8 9.5980 -8.8350 6.2123 24 7 5.6759 -6.9341 2.5177 25 6 2.1869 -5.8891 0.3315 26 6 1.4362 -4.7345 0.2294 27 1 -0.4849 0.8401 -0.0004 28 1 3.9525 -2.4846 0.0006 29 1 5.2809 -4.5472 0.1946 30 1 5.3269 -6.9558 -0.0905 31 1 3.8306 -7.9147 0.0087 32 1 7.0239 -6.1677 4.7342 33 1 6.0058 -7.1426 5.8211 34 1 7.1257 -9.2049 5.0203 35 1 8.1438 -8.2299 3.9334 36 1 10.1924 -8.6362 6.9486 37 1 1.6948 -6.8464 0.4209 38 1 0.3576 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:58 Heat of formation + Delta-G solvation = 3.443729 kcal Electronic energy + Delta-G solvation = -24716.827214 eV Core-core repulsion = 20755.257476 eV Total energy + Delta-G solvation = -3961.569738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.29599 -41.21952 -40.91568 -38.72607 -37.22508 -36.39707 -35.15622 -34.39058 -33.31479 -31.95399 -31.55470 -28.34179 -27.38758 -26.82833 -24.25315 -23.78413 -23.33901 -22.27561 -21.79508 -19.96064 -19.17580 -19.02545 -18.40252 -18.30456 -17.51472 -17.14705 -16.54158 -16.39155 -16.01376 -15.64590 -15.53618 -15.25818 -14.98530 -14.66112 -14.51678 -14.32899 -14.28244 -13.71437 -13.49084 -13.28416 -13.14292 -12.88504 -12.78066 -12.56828 -12.52027 -12.40123 -12.28150 -12.16488 -11.88971 -11.87899 -11.66591 -11.27650 -11.03118 -10.87203 -9.90103 -9.15904 -8.54049 -6.22842 0.14447 0.38986 0.50471 1.10539 1.23030 1.28371 1.33073 1.44224 1.50577 2.12070 2.13065 2.75049 3.00207 3.09457 3.31008 3.39792 3.67601 3.71578 3.83111 4.05430 4.10435 4.21431 4.31813 4.35313 4.49207 4.58808 4.63944 4.67724 4.81883 4.86587 4.92979 4.98678 5.06629 5.16365 5.26942 5.42399 5.57705 5.60897 5.65824 5.94875 6.05957 6.90264 7.01818 7.39544 7.67171 8.68414 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.002514 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.500907 B =11136.798010 C =12418.379617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.225 6.225 10 C 0.129 3.871 11 C -0.250 4.250 12 C -0.033 4.033 13 C -0.209 4.209 14 C 0.181 3.819 15 N -0.119 5.119 16 N -0.074 5.074 17 N -0.310 5.310 18 C 0.158 3.842 19 C -0.007 4.007 20 C -0.101 4.101 21 C 0.493 3.507 22 O -0.551 6.551 23 O -0.512 6.512 24 N -0.308 5.308 25 C -0.034 4.034 26 C -0.212 4.212 27 H 0.274 0.726 28 H 0.122 0.878 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.429 0.571 37 H 0.154 0.846 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.462 -18.130 4.856 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.492 4.492 8 H 0.122 0.878 9 O -0.130 6.130 10 C 0.077 3.923 11 C -0.269 4.269 12 C -0.052 4.052 13 C -0.211 4.211 14 C 0.065 3.935 15 N -0.033 5.033 16 N -0.067 5.067 17 N -0.180 5.180 18 C -0.125 4.125 19 C -0.047 4.047 20 C -0.139 4.139 21 C 0.337 3.663 22 O -0.442 6.442 23 O -0.326 6.326 24 N -0.159 5.159 25 C -0.053 4.053 26 C -0.231 4.231 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.291 0.709 37 H 0.172 0.828 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.203 -18.038 4.348 25.302 hybrid contribution 0.411 1.576 0.681 1.766 sum 17.615 -16.461 5.029 24.628 Atomic orbital electron populations 1.70176 1.08061 1.29043 1.48059 1.26627 0.96859 1.02841 0.95561 0.84581 0.77788 0.74421 0.79423 1.18480 1.19646 1.17701 1.21853 0.92613 0.81245 1.53510 0.87837 1.83948 1.36183 1.12741 1.80174 1.20058 0.91737 0.87995 0.92464 1.21265 0.92991 1.00252 1.12441 1.21019 1.00139 0.90629 0.93380 1.19460 0.93568 0.94173 1.13928 1.21409 1.03842 0.97360 0.70931 1.50792 1.10743 1.28255 1.13551 1.78894 1.18932 1.12488 0.96387 1.75782 1.08467 1.20829 1.12932 1.25721 0.96193 0.97123 0.93422 1.19664 0.92194 1.00330 0.92512 1.21213 0.94035 1.01579 0.97092 1.23341 0.80082 0.78690 0.84229 1.90762 1.73911 1.31272 1.48211 1.84483 1.39182 1.53439 1.55527 1.74636 1.12272 1.22426 1.06583 1.20983 0.93113 0.97388 0.93798 1.20476 1.00263 0.90472 1.11908 0.91647 0.86026 0.83621 0.83321 0.83020 0.88011 0.87905 0.85651 0.85530 0.70859 0.82848 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.67 21.62 0.30 -55.14 16 2 C -0.02 -1.15 5.49 84.84 0.47 -0.68 16 3 Si 1.02 42.05 29.55 68.60 2.03 44.07 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 7 C -0.42 -23.73 9.49 67.92 0.64 -23.09 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 9 O -0.22 -13.24 9.76 -22.68 -0.22 -13.46 16 10 C 0.13 6.20 6.65 22.58 0.15 6.35 16 11 C -0.25 -10.30 9.17 22.39 0.21 -10.09 16 12 C -0.03 -1.02 9.69 22.25 0.22 -0.81 16 13 C -0.21 -5.60 5.47 -19.83 -0.11 -5.71 16 14 C 0.18 3.20 6.73 85.63 0.58 3.78 16 15 N -0.12 -2.84 3.98 -190.97 -0.76 -3.61 16 16 N -0.07 -2.04 13.25 37.02 0.49 -1.55 16 17 N -0.31 -8.57 12.50 -51.27 -0.64 -9.21 16 18 C 0.16 3.74 7.62 138.55 1.06 4.80 16 19 C -0.01 -0.12 5.13 29.85 0.15 0.04 16 20 C -0.10 -1.19 5.79 29.85 0.17 -1.02 16 21 C 0.49 6.88 8.33 71.23 0.59 7.47 16 22 O -0.55 -11.77 16.74 21.98 0.37 -11.41 16 23 O -0.51 -4.64 13.42 -51.43 -0.69 -5.33 16 24 N -0.31 -7.53 12.13 -51.21 -0.62 -8.15 16 25 C -0.03 -1.04 9.69 22.25 0.22 -0.83 16 26 C -0.21 -8.59 9.99 22.39 0.22 -8.36 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.12 5.13 5.64 -2.91 -0.02 5.12 16 29 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.15 1.75 8.08 -2.39 -0.02 1.73 16 31 H 0.15 1.75 8.08 -2.38 -0.02 1.73 16 32 H 0.10 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.10 1.86 8.10 -2.39 -0.02 1.84 16 34 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.43 0.55 9.10 -74.06 -0.67 -0.12 16 37 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -79.80 346.65 5.27 -74.53 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.46 Total: 17.40 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 4.56 Total: -28.16 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.24 Total: -77.65 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.54 Total: -30.20 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -79.80 5.27 -74.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.979 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds