Wall clock time and date at job start Tue Mar 31 2020 11:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35646 * 116.99616 * 2 1 4 4 C 1.46361 * 126.66610 * 270.25797 * 3 2 1 5 5 C 1.39879 * 133.51194 * 359.33404 * 4 3 2 6 6 C 1.36522 * 119.80265 * 180.36212 * 5 4 3 7 7 C 1.38904 * 120.52205 * 0.29690 * 6 5 4 8 8 C 1.37688 * 120.69615 * 359.97438 * 7 6 5 9 9 C 1.39301 * 119.85074 * 359.97438 * 8 7 6 10 10 N 1.37538 * 132.84344 * 180.02562 * 9 8 7 11 11 H 0.97000 * 125.07264 * 0.02562 * 10 9 8 12 12 C 1.37836 * 126.66964 * 90.02703 * 3 2 1 13 13 C 1.46174 * 125.51683 * 359.97165 * 12 3 2 14 14 O 1.21792 * 120.00052 * 256.63632 * 13 12 3 15 15 N 1.34775 * 120.00136 * 76.62328 * 13 12 3 16 16 C 1.36871 * 120.00427 * 184.00467 * 15 13 12 17 17 H 1.08004 * 119.99375 * 16.21081 * 16 15 13 18 18 C 1.38989 * 120.00141 * 196.20735 * 16 15 13 19 19 N 1.31404 * 120.00335 * 15.30380 * 18 16 15 20 20 Si 1.86801 * 119.99913 * 195.29974 * 18 16 15 21 21 H 1.48498 * 109.47370 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47285 * 120.00434 * 20 18 16 23 23 H 1.48505 * 109.47005 * 240.00150 * 20 18 16 24 24 C 1.46504 * 119.99458 * 4.01379 * 15 13 12 25 25 C 1.50705 * 109.47142 * 83.50959 * 24 15 13 26 26 O 1.20825 * 119.99827 * 359.97438 * 25 24 15 27 27 O 1.34229 * 119.99760 * 179.97438 * 25 24 15 28 28 H 1.08996 * 109.47365 * 299.99925 * 1 2 3 29 29 H 1.08999 * 109.46650 * 60.00719 * 1 2 3 30 30 H 1.08997 * 109.46687 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.09567 * 0.63552 * 5 4 3 32 32 H 1.08000 * 119.73989 * 180.27237 * 6 5 4 33 33 H 1.07997 * 119.64909 * 179.97438 * 7 6 5 34 34 H 1.08004 * 120.07358 * 179.97438 * 8 7 6 35 35 H 0.96998 * 120.00576 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.46705 * 203.50191 * 24 15 13 37 37 H 1.08993 * 109.47209 * 323.50701 * 24 15 13 38 38 H 0.96700 * 116.99708 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 2.4368 1.9898 -1.1740 5 6 2.3335 1.7747 -2.5523 6 6 2.8106 2.7118 -3.4229 7 6 3.4041 3.8757 -2.9511 8 6 3.5218 4.1064 -1.5988 9 6 3.0416 3.1656 -0.6906 10 7 3.0177 3.1198 0.6838 11 1 3.3681 3.8082 1.2706 12 6 2.4189 1.9419 1.1056 13 6 2.2160 1.5434 2.4972 14 8 1.3227 2.0503 3.1518 15 7 3.0172 0.6148 3.0560 16 6 2.7768 0.1818 4.3320 17 1 1.8201 0.3725 4.7956 18 6 3.7637 -0.5032 5.0309 19 7 5.0070 -0.4782 4.6065 20 14 3.3226 -1.4593 6.5739 21 1 1.8671 -1.3292 6.8378 22 1 3.6656 -2.8916 6.3837 23 1 4.0847 -0.9168 7.7272 24 6 4.1456 0.0691 2.2976 25 6 5.3268 0.9974 2.4168 26 8 5.2353 2.0110 3.0679 27 8 6.4806 0.6980 1.7995 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.8736 0.8720 -2.9266 32 1 2.7264 2.5467 -4.4869 33 1 3.7772 4.6073 -3.6525 34 1 3.9855 5.0146 -1.2431 35 1 5.6959 -0.9560 5.0944 36 1 4.4115 -0.9101 2.6960 37 1 3.8650 -0.0292 1.2490 38 1 7.2102 1.3237 1.9053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610277148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:21 Heat of formation + Delta-G solvation = -82.751077 kcal Electronic energy + Delta-G solvation = -27592.086805 eV Core-core repulsion = 23594.486629 eV Total energy + Delta-G solvation = -3997.600176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09871 -39.38753 -38.22137 -37.55480 -36.36410 -35.31401 -34.61248 -31.92089 -31.34055 -29.29137 -28.66846 -27.76605 -26.52579 -25.23758 -23.10905 -21.84220 -21.22679 -20.69284 -19.38576 -17.76988 -17.28823 -17.00364 -16.62024 -16.39724 -15.86265 -15.55679 -15.25766 -14.98003 -14.52735 -14.39120 -14.26635 -14.04203 -13.76566 -13.72969 -13.30949 -13.00571 -12.53851 -12.03298 -11.78438 -11.71983 -11.56140 -11.51151 -11.40683 -11.02091 -10.91092 -10.53342 -10.46983 -10.43206 -9.81591 -9.67130 -9.39404 -9.17723 -8.87698 -8.10757 -8.02912 -7.37180 -6.59524 -4.06664 1.14411 1.73301 2.45230 2.81894 3.11526 3.18009 3.24988 3.39643 3.62184 3.91884 3.96299 4.14439 4.31958 4.61625 4.84270 4.97611 5.10765 5.15381 5.36382 5.46317 5.61474 5.65885 5.67928 5.78095 5.86246 5.97440 6.01114 6.13141 6.40487 6.46762 6.58805 6.62003 6.69864 6.84224 7.21379 7.37121 7.41582 7.61632 7.77616 7.94869 8.18353 8.86216 8.92950 9.10747 9.60750 10.47012 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.005046 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.797784 B = 5547.800934 C = 6280.880796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.298 6.298 3 C 0.018 3.982 4 C -0.116 4.116 5 C -0.062 4.062 6 C -0.153 4.153 7 C -0.100 4.100 8 C -0.129 4.129 9 C 0.110 3.890 10 N -0.563 5.563 11 H 0.424 0.576 12 C 0.075 3.925 13 C 0.504 3.496 14 O -0.567 6.567 15 N -0.399 5.399 16 C -0.299 4.299 17 H 0.112 0.888 18 C 0.031 3.969 19 N -0.881 5.881 20 Si 0.939 3.061 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.281 1.281 24 C 0.136 3.864 25 C 0.497 3.503 26 O -0.516 6.516 27 O -0.529 6.529 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.275 0.725 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 2.011 -13.202 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.212 6.212 3 C -0.034 4.034 4 C -0.121 4.121 5 C -0.080 4.080 6 C -0.172 4.172 7 C -0.120 4.120 8 C -0.150 4.150 9 C 0.001 3.999 10 N -0.167 5.167 11 H 0.262 0.738 12 C -0.038 4.038 13 C 0.291 3.709 14 O -0.451 6.451 15 N -0.116 5.116 16 C -0.427 4.427 17 H 0.130 0.870 18 C -0.172 4.172 19 N -0.521 5.521 20 Si 0.765 3.235 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.206 1.206 24 C 0.011 3.989 25 C 0.339 3.661 26 O -0.402 6.402 27 O -0.339 6.339 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.797 2.039 -12.510 12.700 hybrid contribution 0.698 0.535 1.175 1.468 sum -0.099 2.574 -11.335 11.624 Atomic orbital electron populations 1.23058 0.80026 1.02693 1.00633 1.85998 1.19348 1.22412 1.93472 1.18720 1.06564 0.89304 0.88839 1.19307 1.04798 0.94633 0.93355 1.20271 0.98370 0.98849 0.90533 1.20560 1.02414 0.95022 0.99237 1.20749 0.99599 0.97591 0.94013 1.20065 1.04319 0.98525 0.92082 1.18159 1.02090 0.96789 0.82893 1.41838 1.51838 1.18144 1.04905 0.73793 1.20984 1.00563 0.87155 0.95111 1.16605 0.87381 0.82703 0.84242 1.90725 1.35626 1.56207 1.62550 1.43233 1.21896 1.33069 1.13419 1.19864 1.01038 1.32297 0.89469 0.86994 1.25357 0.94079 0.98009 0.99764 1.69758 1.00210 1.40999 1.41114 0.85657 0.79165 0.78730 0.79964 1.18931 1.20252 1.20646 1.20907 0.83113 0.98651 0.96276 1.23755 0.83309 0.85041 0.74034 1.90580 1.83532 1.28079 1.38024 1.84538 1.23562 1.54964 1.70853 0.93258 0.94048 0.89085 0.86046 0.86197 0.85934 0.86157 0.91478 0.84112 0.89682 0.75211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.13 101.05 1.12 1.59 16 2 O -0.30 -5.58 10.52 -18.64 -0.20 -5.77 16 3 C 0.02 0.35 5.55 -36.46 -0.20 0.15 16 4 C -0.12 -1.98 6.34 -105.05 -0.67 -2.65 16 5 C -0.06 -0.86 10.06 -39.59 -0.40 -1.26 16 6 C -0.15 -1.81 9.97 -39.95 -0.40 -2.21 16 7 C -0.10 -1.16 10.01 -39.54 -0.40 -1.55 16 8 C -0.13 -1.72 10.08 -39.39 -0.40 -2.12 16 9 C 0.11 1.81 7.24 -83.95 -0.61 1.20 16 10 N -0.56 -10.38 6.14 -7.02 -0.04 -10.42 16 11 H 0.42 7.36 8.96 -40.82 -0.37 6.99 16 12 C 0.07 1.59 5.39 -81.71 -0.44 1.15 16 13 C 0.50 12.73 7.20 -13.08 -0.09 12.63 16 14 O -0.57 -16.02 16.77 5.11 0.09 -15.93 16 15 N -0.40 -10.22 2.18 -117.75 -0.26 -10.48 16 16 C -0.30 -8.09 9.37 -15.02 -0.14 -8.24 16 17 H 0.11 3.14 7.35 -52.48 -0.39 2.75 16 18 C 0.03 0.79 5.05 -17.46 -0.09 0.70 16 19 N -0.88 -22.50 9.07 55.50 0.50 -22.00 16 20 Si 0.94 19.99 29.58 -169.99 -5.03 14.96 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 24 C 0.14 3.15 4.98 -5.19 -0.03 3.12 16 25 C 0.50 11.29 6.49 36.01 0.23 11.53 16 26 O -0.52 -13.15 16.95 -18.75 -0.32 -13.47 16 27 O -0.53 -9.92 13.42 -39.25 -0.53 -10.45 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.14 3.34 6.08 -51.93 -0.32 3.03 16 37 H 0.09 1.82 6.30 -51.93 -0.33 1.50 16 38 H 0.39 5.59 9.10 45.56 0.41 6.00 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -33.23 337.58 -6.26 -39.50 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -3.07 Total: 14.92 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: -2.50 Total: 14.05 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.20 Total: -42.90 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.96 Total: -45.62 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.23 -6.26 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610277148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.254 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds