Wall clock time and date at job start Tue Mar 31 2020 11:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35646 * 116.99616 * 2 1 4 4 C 1.46361 * 126.66610 * 270.25797 * 3 2 1 5 5 C 1.39879 * 133.51194 * 359.33404 * 4 3 2 6 6 C 1.36522 * 119.80265 * 180.36212 * 5 4 3 7 7 C 1.38904 * 120.52205 * 0.29690 * 6 5 4 8 8 C 1.37688 * 120.69615 * 359.97438 * 7 6 5 9 9 C 1.39301 * 119.85074 * 359.97438 * 8 7 6 10 10 N 1.37538 * 132.84344 * 180.02562 * 9 8 7 11 11 H 0.97000 * 125.07264 * 0.02562 * 10 9 8 12 12 C 1.37836 * 126.66964 * 90.02703 * 3 2 1 13 13 C 1.46174 * 125.51683 * 359.97165 * 12 3 2 14 14 O 1.21792 * 120.00052 * 256.63632 * 13 12 3 15 15 N 1.34775 * 120.00136 * 76.62328 * 13 12 3 16 16 C 1.36871 * 120.00427 * 184.00467 * 15 13 12 17 17 H 1.08004 * 119.99375 * 16.21081 * 16 15 13 18 18 C 1.38989 * 120.00141 * 196.20735 * 16 15 13 19 19 N 1.31404 * 120.00335 * 15.30380 * 18 16 15 20 20 Si 1.86801 * 119.99913 * 195.29974 * 18 16 15 21 21 H 1.48498 * 109.47370 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47285 * 120.00434 * 20 18 16 23 23 H 1.48505 * 109.47005 * 240.00150 * 20 18 16 24 24 C 1.46504 * 119.99458 * 4.01379 * 15 13 12 25 25 C 1.50705 * 109.47142 * 83.50959 * 24 15 13 26 26 O 1.20825 * 119.99827 * 359.97438 * 25 24 15 27 27 O 1.34229 * 119.99760 * 179.97438 * 25 24 15 28 28 H 1.08996 * 109.47365 * 299.99925 * 1 2 3 29 29 H 1.08999 * 109.46650 * 60.00719 * 1 2 3 30 30 H 1.08997 * 109.46687 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.09567 * 0.63552 * 5 4 3 32 32 H 1.08000 * 119.73989 * 180.27237 * 6 5 4 33 33 H 1.07997 * 119.64909 * 179.97438 * 7 6 5 34 34 H 1.08004 * 120.07358 * 179.97438 * 8 7 6 35 35 H 0.96998 * 120.00576 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.46705 * 203.50191 * 24 15 13 37 37 H 1.08993 * 109.47209 * 323.50701 * 24 15 13 38 38 H 0.96700 * 116.99708 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 2.4368 1.9898 -1.1740 5 6 2.3335 1.7747 -2.5523 6 6 2.8106 2.7118 -3.4229 7 6 3.4041 3.8757 -2.9511 8 6 3.5218 4.1064 -1.5988 9 6 3.0416 3.1656 -0.6906 10 7 3.0177 3.1198 0.6838 11 1 3.3681 3.8082 1.2706 12 6 2.4189 1.9419 1.1056 13 6 2.2160 1.5434 2.4972 14 8 1.3227 2.0503 3.1518 15 7 3.0172 0.6148 3.0560 16 6 2.7768 0.1818 4.3320 17 1 1.8201 0.3725 4.7956 18 6 3.7637 -0.5032 5.0309 19 7 5.0070 -0.4782 4.6065 20 14 3.3226 -1.4593 6.5739 21 1 1.8671 -1.3292 6.8378 22 1 3.6656 -2.8916 6.3837 23 1 4.0847 -0.9168 7.7272 24 6 4.1456 0.0691 2.2976 25 6 5.3268 0.9974 2.4168 26 8 5.2353 2.0110 3.0679 27 8 6.4806 0.6980 1.7995 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.8736 0.8720 -2.9266 32 1 2.7264 2.5467 -4.4869 33 1 3.7772 4.6073 -3.6525 34 1 3.9855 5.0146 -1.2431 35 1 5.6959 -0.9560 5.0944 36 1 4.4115 -0.9101 2.6960 37 1 3.8650 -0.0292 1.2490 38 1 7.2102 1.3237 1.9053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610277148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:21 Heat of formation + Delta-G solvation = -106.265399 kcal Electronic energy + Delta-G solvation = -27593.106463 eV Core-core repulsion = 23594.486629 eV Total energy + Delta-G solvation = -3998.619834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45430 -41.13802 -39.96745 -38.96794 -37.58722 -37.12361 -36.49721 -33.87773 -32.50658 -30.53260 -30.02250 -29.58476 -27.89816 -26.97105 -24.56871 -23.06416 -22.88963 -22.04508 -20.98645 -19.33567 -19.05354 -18.77308 -18.09043 -17.85149 -17.40445 -17.10528 -16.85616 -16.53174 -16.31117 -15.97759 -15.57436 -15.36935 -15.10369 -14.93539 -14.84599 -14.64988 -13.94041 -13.81828 -13.64471 -13.40383 -12.79160 -12.74647 -12.66850 -12.58752 -12.47823 -12.27491 -12.13342 -11.94147 -11.70535 -11.18229 -11.08128 -10.72931 -10.55140 -10.06104 -9.22887 -8.65596 -8.54753 -6.11370 -0.05720 0.65552 1.04048 1.22548 1.40667 1.47496 1.56538 1.61773 2.01351 2.18591 2.41047 2.81874 2.83120 3.00576 3.10087 3.54092 3.76432 4.14491 4.22144 4.25271 4.27584 4.46109 4.48409 4.55536 4.59751 4.67682 4.71758 4.78514 4.83055 5.12922 5.30557 5.32954 5.54562 5.61857 5.69599 5.79500 5.81387 6.11637 6.20925 6.36300 6.55906 6.89028 7.09009 7.29008 7.66975 8.50754 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.005046 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.797784 B = 5547.800934 C = 6280.880796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.027 3.973 4 C -0.142 4.142 5 C -0.070 4.070 6 C -0.141 4.141 7 C -0.081 4.081 8 C -0.140 4.140 9 C 0.100 3.900 10 N -0.565 5.565 11 H 0.422 0.578 12 C 0.030 3.970 13 C 0.500 3.500 14 O -0.617 6.617 15 N -0.407 5.407 16 C -0.341 4.341 17 H 0.087 0.913 18 C 0.003 3.997 19 N -0.892 5.892 20 Si 1.004 2.996 21 H -0.270 1.270 22 H -0.257 1.257 23 H -0.279 1.279 24 C 0.142 3.858 25 C 0.506 3.494 26 O -0.549 6.549 27 O -0.515 6.515 28 H 0.021 0.979 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.281 0.719 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 1.891 -16.233 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C -0.026 4.026 4 C -0.146 4.146 5 C -0.089 4.089 6 C -0.160 4.160 7 C -0.100 4.100 8 C -0.161 4.161 9 C -0.008 4.008 10 N -0.170 5.170 11 H 0.260 0.740 12 C -0.082 4.082 13 C 0.289 3.711 14 O -0.504 6.504 15 N -0.123 5.123 16 C -0.468 4.468 17 H 0.105 0.895 18 C -0.199 4.199 19 N -0.531 5.531 20 Si 0.826 3.174 21 H -0.194 1.194 22 H -0.182 1.182 23 H -0.205 1.205 24 C 0.016 3.984 25 C 0.348 3.652 26 O -0.438 6.438 27 O -0.327 6.327 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.151 0.849 37 H 0.115 0.885 38 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.438 1.902 -15.591 15.713 hybrid contribution 0.399 0.614 1.893 2.030 sum 0.837 2.516 -13.698 13.952 Atomic orbital electron populations 1.23220 0.78224 1.04576 1.00344 1.85920 1.21051 1.22610 1.93615 1.19013 1.05226 0.88848 0.89464 1.19453 1.06397 0.94677 0.94111 1.20561 0.98752 1.00257 0.89281 1.21054 1.00158 0.93962 1.00835 1.21315 0.97116 0.97903 0.93702 1.20465 1.04448 0.98715 0.92466 1.18619 1.02391 0.97718 0.82066 1.41715 1.52188 1.17264 1.05878 0.74005 1.20375 1.04912 0.89612 0.93283 1.17143 0.86323 0.81925 0.85748 1.90650 1.37413 1.57797 1.64523 1.43346 1.22561 1.33194 1.13233 1.19832 1.01025 1.34973 0.90934 0.89496 1.26160 0.93697 0.97738 1.02328 1.69817 1.00635 1.40635 1.41968 0.84724 0.78488 0.78103 0.76048 1.19427 1.18153 1.20456 1.20848 0.82904 0.98128 0.96477 1.23526 0.83993 0.84202 0.73457 1.90568 1.84236 1.29351 1.39663 1.84457 1.23179 1.55361 1.69702 0.95999 0.91811 0.86159 0.84609 0.82370 0.81827 0.84063 0.90868 0.84941 0.88502 0.72550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.13 113.37 1.26 2.21 16 2 O -0.32 -12.12 10.52 -89.60 -0.94 -13.06 16 3 C 0.03 1.09 5.55 24.29 0.13 1.23 16 4 C -0.14 -4.72 6.34 -20.14 -0.13 -4.85 16 5 C -0.07 -1.76 10.06 22.27 0.22 -1.53 16 6 C -0.14 -2.64 9.97 22.03 0.22 -2.42 16 7 C -0.08 -1.47 10.01 22.30 0.22 -1.25 16 8 C -0.14 -3.32 10.08 22.40 0.23 -3.10 16 9 C 0.10 3.23 7.24 39.13 0.28 3.52 16 10 N -0.57 -21.63 6.14 -176.12 -1.08 -22.71 16 11 H 0.42 15.53 8.96 -92.71 -0.83 14.70 16 12 C 0.03 1.36 5.39 40.02 0.22 1.57 16 13 C 0.50 27.03 7.20 86.30 0.62 27.65 16 14 O -0.62 -37.69 16.77 -4.64 -0.08 -37.76 16 15 N -0.41 -22.04 2.18 -644.64 -1.41 -23.44 16 16 C -0.34 -19.44 9.37 84.09 0.79 -18.66 16 17 H 0.09 5.26 7.35 -2.91 -0.02 5.24 16 18 C 0.00 0.14 5.05 84.94 0.43 0.57 16 19 N -0.89 -45.97 9.07 21.67 0.20 -45.77 16 20 Si 1.00 41.56 29.58 68.60 2.03 43.59 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.14 6.75 4.98 85.63 0.43 7.18 16 25 C 0.51 23.27 6.49 71.24 0.46 23.73 16 26 O -0.55 -28.74 16.95 21.97 0.37 -28.37 16 27 O -0.51 -18.80 13.42 -51.41 -0.69 -19.49 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 36 H 0.13 6.47 6.08 -2.39 -0.01 6.45 16 37 H 0.10 4.30 6.30 -2.39 -0.02 4.29 16 38 H 0.41 11.13 9.10 -74.06 -0.67 10.46 16 Total: -1.00 -76.83 337.58 3.43 -73.40 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: -0.36 Total: 37.76 kcal Atomic # 6 Polarization: 30.47 SS G_CDS: 5.39 Total: 35.86 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -2.29 Total: -91.92 kcal Atomic # 8 Polarization: -97.34 SS G_CDS: -1.34 Total: -98.68 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -76.83 3.43 -73.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610277148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.868 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds