Wall clock time and date at job start Tue Mar 31 2020 11:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 116.99956 * 2 1 4 4 C 1.39381 * 119.82254 * 359.97438 * 3 2 1 5 5 C 1.37624 * 120.60942 * 179.72216 * 4 3 2 6 6 C 1.39177 * 120.02792 * 0.26047 * 5 4 3 7 7 N 1.37728 * 133.02069 * 179.97438 * 6 5 4 8 8 H 0.96991 * 125.61505 * 359.97438 * 7 6 5 9 9 C 1.38125 * 108.75997 * 180.02562 * 7 6 5 10 10 C 1.46896 * 125.43309 * 179.97438 * 9 7 6 11 11 O 1.21704 * 119.99707 * 163.87419 * 10 9 7 12 12 N 1.34773 * 120.00259 * 343.87613 * 10 9 7 13 13 C 1.36814 * 120.00220 * 184.97779 * 12 10 9 14 14 H 1.08005 * 119.99923 * 12.27920 * 13 12 10 15 15 C 1.39062 * 120.00119 * 192.27540 * 13 12 10 16 16 N 1.31363 * 119.99911 * 24.94341 * 15 13 12 17 17 Si 1.86795 * 120.00044 * 204.94190 * 15 13 12 18 18 H 1.48503 * 109.47226 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47210 * 120.00050 * 17 15 13 20 20 H 1.48494 * 109.47219 * 240.00158 * 17 15 13 21 21 C 1.46500 * 120.00048 * 4.97553 * 12 10 9 22 22 C 1.50703 * 109.46845 * 84.25232 * 21 12 10 23 23 O 1.20825 * 120.00236 * 0.02562 * 22 21 12 24 24 O 1.34225 * 119.99964 * 179.97438 * 22 21 12 25 25 C 1.36012 * 109.12890 * 0.02562 * 9 7 6 26 26 C 1.40834 * 119.61514 * 359.97438 * 6 5 4 27 27 C 1.37847 * 119.82479 * 180.25077 * 3 2 1 28 28 H 1.08993 * 109.47055 * 60.00615 * 1 2 3 29 29 H 1.09003 * 109.46764 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46734 * 299.99738 * 1 2 3 31 31 H 1.08002 * 119.69484 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.98516 * 180.23248 * 5 4 3 33 33 H 0.97001 * 119.99884 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47199 * 204.25022 * 21 12 10 35 35 H 1.08997 * 109.47125 * 324.25658 * 21 12 10 36 36 H 0.96703 * 117.00516 * 180.02562 * 24 22 21 37 37 H 1.07997 * 126.13086 * 179.97438 * 25 9 7 38 38 H 1.08000 * 120.16493 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2836 2.3782 -0.0005 5 6 1.8915 3.6129 0.0052 6 6 3.2802 3.7056 0.0061 7 7 4.1508 4.7728 0.0108 8 1 3.8968 5.7089 0.0141 9 6 5.4450 4.2903 0.0088 10 6 6.6611 5.1143 0.0119 11 8 7.7328 4.6163 0.3026 12 7 6.5900 6.4218 -0.3072 13 6 7.7342 7.1656 -0.4038 14 1 8.6967 6.6759 -0.4223 15 6 7.6580 8.5522 -0.4782 16 7 6.6161 9.1802 0.0173 17 14 9.0372 9.5215 -1.2828 18 1 10.0879 8.5859 -1.7582 19 1 8.4976 10.2862 -2.4358 20 1 9.6224 10.4629 -0.2947 21 6 5.2875 7.0467 -0.5506 22 6 4.6782 7.4658 0.7625 23 8 5.2713 7.2638 1.7956 24 8 3.4770 8.0645 0.7843 25 6 5.4138 2.9306 0.0024 26 6 4.0561 2.5302 0.0017 27 6 3.4232 1.2796 -0.0052 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2056 2.3126 -0.0005 32 1 1.2907 4.5103 0.0085 33 1 6.5631 10.1474 -0.0343 34 1 5.4177 7.9222 -1.1867 35 1 4.6288 6.3328 -1.0453 36 1 3.1272 8.3155 1.6501 37 1 6.2712 2.2739 -0.0009 38 1 4.0112 0.3737 -0.0089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610348998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:24 Heat of formation + Delta-G solvation = -61.422954 kcal Electronic energy + Delta-G solvation = -26802.445533 eV Core-core repulsion = 22805.770213 eV Total energy + Delta-G solvation = -3996.675319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46661 -39.82896 -39.09730 -38.10979 -35.60075 -35.41859 -34.88661 -32.30494 -31.77334 -29.42437 -28.72277 -28.07421 -26.78417 -25.51765 -23.21961 -21.74473 -21.41447 -20.76221 -19.59379 -17.90820 -17.54498 -17.34969 -17.20379 -16.70623 -16.00741 -15.69754 -15.62605 -15.23890 -14.71957 -14.44930 -14.22109 -14.09184 -13.53091 -13.33854 -13.26110 -12.96969 -12.72652 -12.53302 -12.28470 -12.05159 -11.92401 -11.79231 -11.70722 -11.13389 -10.77458 -10.64937 -10.60176 -10.49903 -10.36695 -10.01435 -9.61474 -9.32188 -8.96506 -8.26034 -7.73149 -7.37398 -6.74880 -4.09163 1.01666 1.79002 2.51337 2.89911 3.04346 3.12267 3.20198 3.28614 3.39783 3.56174 3.90309 3.99236 4.16376 4.41026 4.76839 4.82958 4.96905 5.01839 5.05785 5.20470 5.30839 5.35662 5.37327 5.48505 5.66571 5.80455 6.03683 6.06861 6.16158 6.23200 6.42875 6.45534 6.69545 6.96849 7.12147 7.15074 7.29650 7.51582 7.59438 7.75363 8.09501 8.61866 8.79718 8.98493 9.52753 10.33412 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.003673 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.336831 B = 7622.087406 C = 8379.642540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.090 3.910 4 C -0.180 4.180 5 C -0.088 4.088 6 C 0.064 3.936 7 N -0.589 5.589 8 H 0.417 0.583 9 C 0.074 3.926 10 C 0.505 3.495 11 O -0.554 6.554 12 N -0.415 5.415 13 C -0.303 4.303 14 H 0.118 0.882 15 C 0.030 3.970 16 N -0.872 5.872 17 Si 0.934 3.066 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.280 1.280 21 C 0.117 3.883 22 C 0.471 3.529 23 O -0.486 6.486 24 O -0.533 6.533 25 C -0.153 4.153 26 C -0.066 4.066 27 C -0.109 4.109 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.276 0.724 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.399 0.601 37 H 0.154 0.846 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.245 -7.182 -2.879 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.045 3.955 4 C -0.200 4.200 5 C -0.109 4.109 6 C -0.044 4.044 7 N -0.203 5.203 8 H 0.264 0.736 9 C -0.036 4.036 10 C 0.295 3.705 11 O -0.436 6.436 12 N -0.132 5.132 13 C -0.430 4.430 14 H 0.136 0.864 15 C -0.174 4.174 16 N -0.511 5.511 17 Si 0.759 3.241 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.010 4.010 22 C 0.310 3.690 23 O -0.370 6.370 24 O -0.345 6.345 25 C -0.179 4.179 26 C -0.071 4.071 27 C -0.128 4.128 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.104 0.896 36 H 0.256 0.744 37 H 0.171 0.829 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.298 -7.386 -2.796 15.466 hybrid contribution -0.262 1.697 0.483 1.783 sum -13.560 -5.689 -2.313 14.886 Atomic orbital electron populations 1.22959 0.79127 1.03381 1.01049 1.86054 1.20705 1.26992 1.89831 1.18509 0.91824 0.83803 1.01325 1.20828 0.99393 0.91399 1.08416 1.19801 0.90434 0.97667 1.02952 1.18387 0.91632 0.87563 1.06801 1.43421 1.04792 1.08078 1.64051 0.73645 1.20842 0.83584 0.94390 1.04829 1.16894 0.86816 0.82571 0.84253 1.90702 1.28248 1.72293 1.52322 1.43430 1.04941 1.06826 1.58052 1.19906 0.86842 0.88377 1.47909 0.86418 1.25356 0.98965 0.96741 0.96336 1.69834 1.31532 1.10153 1.39552 0.85741 0.80395 0.79099 0.78852 1.18720 1.20237 1.20595 1.21274 0.85887 1.01382 0.92450 1.23853 0.77791 0.74324 0.92989 1.90682 1.59767 1.51520 1.35049 1.84512 1.36225 1.73585 1.40138 1.20689 0.95357 0.92487 1.09384 1.17890 0.93227 0.91577 1.04416 1.19651 0.90945 0.96552 1.05664 0.92957 0.88729 0.92989 0.85389 0.85902 0.91373 0.83909 0.89641 0.74396 0.82878 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.49 -19.70 -0.21 -4.19 16 3 C 0.09 1.25 6.67 -39.30 -0.26 0.99 16 4 C -0.18 -2.24 9.01 -39.38 -0.35 -2.59 16 5 C -0.09 -1.20 10.06 -39.46 -0.40 -1.60 16 6 C 0.06 1.08 7.25 -83.89 -0.61 0.47 16 7 N -0.59 -10.80 4.91 -7.33 -0.04 -10.84 16 8 H 0.42 7.29 3.69 -40.82 -0.15 7.14 16 9 C 0.07 1.57 6.54 -82.33 -0.54 1.04 16 10 C 0.51 12.63 7.37 -12.76 -0.09 12.53 16 11 O -0.55 -15.43 16.52 5.18 0.09 -15.34 16 12 N -0.41 -10.26 2.17 -117.51 -0.25 -10.52 16 13 C -0.30 -8.01 9.36 -15.02 -0.14 -8.15 16 14 H 0.12 3.24 7.37 -52.48 -0.39 2.86 16 15 C 0.03 0.74 4.84 -17.45 -0.08 0.66 16 16 N -0.87 -21.51 9.47 55.50 0.53 -20.98 16 17 Si 0.93 19.29 29.62 -169.99 -5.04 14.26 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 C 0.12 2.46 4.75 -5.19 -0.02 2.44 16 22 C 0.47 9.90 4.57 36.01 0.16 10.07 16 23 O -0.49 -12.27 16.96 -18.75 -0.32 -12.58 16 24 O -0.53 -8.67 13.40 -39.25 -0.53 -9.19 16 25 C -0.15 -2.93 10.57 -39.12 -0.41 -3.34 16 26 C -0.07 -1.14 6.16 -106.93 -0.66 -1.80 16 27 C -0.11 -1.65 10.04 -39.00 -0.39 -2.04 16 28 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.36 7.65 -51.93 -0.40 -0.03 16 31 H 0.13 1.19 6.26 -52.49 -0.33 0.86 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.14 3.05 6.16 -51.93 -0.32 2.73 16 35 H 0.09 1.55 4.99 -51.93 -0.26 1.29 16 36 H 0.40 4.87 9.10 45.56 0.41 5.28 16 37 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 38 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -33.00 325.34 -6.33 -39.33 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -2.65 Total: 15.26 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -2.81 Total: 9.90 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.23 Total: -42.34 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.96 Total: -41.31 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.04 Total: 14.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.00 -6.33 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610348998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.097 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds