Wall clock time and date at job start Tue Mar 31 2020 11:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 116.99956 * 2 1 4 4 C 1.39381 * 119.82254 * 359.97438 * 3 2 1 5 5 C 1.37624 * 120.60942 * 179.72216 * 4 3 2 6 6 C 1.39177 * 120.02792 * 0.26047 * 5 4 3 7 7 N 1.37728 * 133.02069 * 179.97438 * 6 5 4 8 8 H 0.96991 * 125.61505 * 359.97438 * 7 6 5 9 9 C 1.38125 * 108.75997 * 180.02562 * 7 6 5 10 10 C 1.46896 * 125.43309 * 179.97438 * 9 7 6 11 11 O 1.21704 * 119.99707 * 163.87419 * 10 9 7 12 12 N 1.34773 * 120.00259 * 343.87613 * 10 9 7 13 13 C 1.36814 * 120.00220 * 184.97779 * 12 10 9 14 14 H 1.08005 * 119.99923 * 12.27920 * 13 12 10 15 15 C 1.39062 * 120.00119 * 192.27540 * 13 12 10 16 16 N 1.31363 * 119.99911 * 24.94341 * 15 13 12 17 17 Si 1.86795 * 120.00044 * 204.94190 * 15 13 12 18 18 H 1.48503 * 109.47226 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47210 * 120.00050 * 17 15 13 20 20 H 1.48494 * 109.47219 * 240.00158 * 17 15 13 21 21 C 1.46500 * 120.00048 * 4.97553 * 12 10 9 22 22 C 1.50703 * 109.46845 * 84.25232 * 21 12 10 23 23 O 1.20825 * 120.00236 * 0.02562 * 22 21 12 24 24 O 1.34225 * 119.99964 * 179.97438 * 22 21 12 25 25 C 1.36012 * 109.12890 * 0.02562 * 9 7 6 26 26 C 1.40834 * 119.61514 * 359.97438 * 6 5 4 27 27 C 1.37847 * 119.82479 * 180.25077 * 3 2 1 28 28 H 1.08993 * 109.47055 * 60.00615 * 1 2 3 29 29 H 1.09003 * 109.46764 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46734 * 299.99738 * 1 2 3 31 31 H 1.08002 * 119.69484 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.98516 * 180.23248 * 5 4 3 33 33 H 0.97001 * 119.99884 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47199 * 204.25022 * 21 12 10 35 35 H 1.08997 * 109.47125 * 324.25658 * 21 12 10 36 36 H 0.96703 * 117.00516 * 180.02562 * 24 22 21 37 37 H 1.07997 * 126.13086 * 179.97438 * 25 9 7 38 38 H 1.08000 * 120.16493 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2836 2.3782 -0.0005 5 6 1.8915 3.6129 0.0052 6 6 3.2802 3.7056 0.0061 7 7 4.1508 4.7728 0.0108 8 1 3.8968 5.7089 0.0141 9 6 5.4450 4.2903 0.0088 10 6 6.6611 5.1143 0.0119 11 8 7.7328 4.6163 0.3026 12 7 6.5900 6.4218 -0.3072 13 6 7.7342 7.1656 -0.4038 14 1 8.6967 6.6759 -0.4223 15 6 7.6580 8.5522 -0.4782 16 7 6.6161 9.1802 0.0173 17 14 9.0372 9.5215 -1.2828 18 1 10.0879 8.5859 -1.7582 19 1 8.4976 10.2862 -2.4358 20 1 9.6224 10.4629 -0.2947 21 6 5.2875 7.0467 -0.5506 22 6 4.6782 7.4658 0.7625 23 8 5.2713 7.2638 1.7956 24 8 3.4770 8.0645 0.7843 25 6 5.4138 2.9306 0.0024 26 6 4.0561 2.5302 0.0017 27 6 3.4232 1.2796 -0.0052 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2056 2.3126 -0.0005 32 1 1.2907 4.5103 0.0085 33 1 6.5631 10.1474 -0.0343 34 1 5.4177 7.9222 -1.1867 35 1 4.6288 6.3328 -1.0453 36 1 3.1272 8.3155 1.6501 37 1 6.2712 2.2739 -0.0009 38 1 4.0112 0.3737 -0.0089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610348998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:23 Heat of formation + Delta-G solvation = -84.247887 kcal Electronic energy + Delta-G solvation = -26803.435296 eV Core-core repulsion = 22805.770213 eV Total energy + Delta-G solvation = -3997.665083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.87814 -41.32968 -40.33203 -39.72928 -37.29841 -36.68905 -36.56863 -34.03994 -33.18778 -30.69486 -30.12815 -29.59503 -27.61867 -27.27347 -24.67910 -23.18362 -22.85099 -22.06972 -21.13124 -19.46496 -19.05381 -18.81180 -18.69227 -18.14532 -17.64162 -16.99278 -16.70203 -16.53805 -16.30408 -16.04026 -15.86007 -15.42658 -14.93264 -14.80991 -14.67138 -14.18277 -14.08837 -13.99210 -13.68334 -13.64429 -13.46434 -12.90783 -12.74919 -12.69095 -12.50017 -12.38938 -12.14465 -11.80925 -11.64893 -11.45422 -11.14858 -10.91256 -10.88356 -10.13859 -9.04410 -8.64457 -8.56721 -6.06774 -0.27078 0.62651 1.01709 1.28559 1.41459 1.41969 1.56519 1.85366 2.04317 2.19869 2.38090 2.46726 2.67977 2.84055 2.98952 3.55333 3.68837 3.79415 3.99223 4.07888 4.34550 4.40252 4.45290 4.50054 4.53704 4.56220 4.59559 4.81705 4.86557 5.04014 5.17235 5.33430 5.34413 5.44416 5.66018 5.68588 5.75781 5.91457 6.19714 6.30528 6.57594 6.87629 7.03011 7.15664 7.65074 8.44607 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.003673 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.336831 B = 7622.087406 C = 8379.642540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.096 3.904 4 C -0.159 4.159 5 C -0.088 4.088 6 C 0.057 3.943 7 N -0.585 5.585 8 H 0.418 0.582 9 C 0.038 3.962 10 C 0.494 3.506 11 O -0.604 6.604 12 N -0.424 5.424 13 C -0.347 4.347 14 H 0.089 0.911 15 C 0.005 3.995 16 N -0.882 5.882 17 Si 1.000 3.000 18 H -0.271 1.271 19 H -0.256 1.256 20 H -0.280 1.280 21 C 0.116 3.884 22 C 0.483 3.517 23 O -0.535 6.535 24 O -0.510 6.510 25 C -0.145 4.145 26 C -0.087 4.087 27 C -0.123 4.123 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.170 0.830 32 H 0.155 0.845 33 H 0.283 0.717 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.421 0.579 37 H 0.151 0.849 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 -7.082 -3.573 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.050 3.950 4 C -0.179 4.179 5 C -0.109 4.109 6 C -0.051 4.051 7 N -0.199 5.199 8 H 0.265 0.735 9 C -0.073 4.073 10 C 0.285 3.715 11 O -0.490 6.490 12 N -0.140 5.140 13 C -0.474 4.474 14 H 0.107 0.893 15 C -0.198 4.198 16 N -0.520 5.520 17 Si 0.822 3.178 18 H -0.195 1.195 19 H -0.180 1.180 20 H -0.206 1.206 21 C -0.010 4.010 22 C 0.324 3.676 23 O -0.423 6.423 24 O -0.324 6.324 25 C -0.173 4.173 26 C -0.092 4.092 27 C -0.143 4.143 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.187 0.813 32 H 0.173 0.827 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.132 0.868 36 H 0.282 0.718 37 H 0.169 0.831 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.293 -7.256 -3.500 19.077 hybrid contribution 0.644 1.498 0.735 1.789 sum -16.649 -5.758 -2.765 17.832 Atomic orbital electron populations 1.23349 0.76496 1.05475 1.02399 1.86060 1.23388 1.26204 1.89377 1.18640 0.91493 0.85077 0.99742 1.21306 1.01364 0.90122 1.05091 1.20215 0.88998 0.99588 1.02059 1.18797 0.92879 0.86565 1.06849 1.43171 1.03919 1.08445 1.64406 0.73520 1.20270 0.83564 0.94411 1.09022 1.17461 0.87618 0.82983 0.83441 1.90628 1.30418 1.73339 1.54657 1.43525 1.05904 1.06912 1.57680 1.19822 0.86861 0.89472 1.51252 0.89306 1.26121 1.01416 0.96645 0.95634 1.69881 1.32518 1.10704 1.38847 0.84799 0.77448 0.77315 0.78249 1.19516 1.17979 1.20588 1.21387 0.85006 1.01780 0.92826 1.23668 0.78344 0.73501 0.92038 1.90673 1.61503 1.53600 1.36504 1.84435 1.33877 1.72277 1.41767 1.20857 0.96736 0.91996 1.07671 1.17931 0.92226 0.92944 1.06081 1.19773 0.92204 0.95983 1.06337 0.91413 0.86612 0.91614 0.81278 0.82704 0.90666 0.84250 0.86806 0.71812 0.83125 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.13 10.49 -93.40 -0.98 -8.11 16 3 C 0.10 2.34 6.67 22.45 0.15 2.49 16 4 C -0.16 -3.19 9.01 22.40 0.20 -2.99 16 5 C -0.09 -2.06 10.06 22.35 0.22 -1.84 16 6 C 0.06 1.83 7.25 39.08 0.28 2.11 16 7 N -0.58 -21.42 4.91 -177.12 -0.87 -22.29 16 8 H 0.42 14.36 3.69 -92.71 -0.34 14.02 16 9 C 0.04 1.67 6.54 39.90 0.26 1.93 16 10 C 0.49 26.39 7.37 86.51 0.64 27.02 16 11 O -0.60 -36.53 16.52 -4.36 -0.07 -36.61 16 12 N -0.42 -22.07 2.17 -643.91 -1.40 -23.47 16 13 C -0.35 -19.36 9.36 84.11 0.79 -18.57 16 14 H 0.09 5.32 7.37 -2.91 -0.02 5.30 16 15 C 0.01 0.26 4.84 84.96 0.41 0.67 16 16 N -0.88 -43.56 9.47 21.68 0.21 -43.36 16 17 Si 1.00 40.04 29.62 68.60 2.03 42.07 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 20 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 21 C 0.12 4.96 4.75 85.63 0.41 5.37 16 22 C 0.48 20.24 4.57 71.24 0.33 20.56 16 23 O -0.53 -27.54 16.96 21.97 0.37 -27.17 16 24 O -0.51 -15.55 13.40 -51.37 -0.69 -16.24 16 25 C -0.15 -5.83 10.57 22.57 0.24 -5.59 16 26 C -0.09 -3.00 6.16 -21.36 -0.13 -3.13 16 27 C -0.12 -3.59 10.04 22.65 0.23 -3.37 16 28 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 29 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16 31 H 0.17 2.01 6.26 -2.91 -0.02 2.00 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 34 H 0.14 5.99 6.16 -2.39 -0.01 5.98 16 35 H 0.11 4.13 4.99 -2.39 -0.01 4.12 16 36 H 0.42 9.19 9.10 -74.06 -0.67 8.51 16 37 H 0.15 5.87 8.06 -2.91 -0.02 5.84 16 38 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -76.49 325.34 3.88 -72.61 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.14 Total: 36.58 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 5.13 Total: 25.98 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -2.06 Total: -89.11 kcal Atomic # 8 Polarization: -86.75 SS G_CDS: -1.37 Total: -88.12 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -76.49 3.88 -72.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610348998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.637 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds