Wall clock time and date at job start Tue Mar 31 2020 12:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.50693 * 109.47399 * 240.00086 * 2 1 3 5 5 H 1.08004 * 120.00455 * 237.22496 * 4 2 1 6 6 C 1.37879 * 120.00113 * 57.22037 * 4 2 1 7 7 N 1.31522 * 119.99884 * 5.17098 * 6 4 2 8 8 Si 1.86801 * 120.00216 * 185.17670 * 6 4 2 9 9 H 1.48494 * 109.47514 * 84.94150 * 8 6 4 10 10 H 1.48504 * 109.46766 * 204.94328 * 8 6 4 11 11 H 1.48505 * 109.46775 * 324.93881 * 8 6 4 12 12 C 1.52998 * 109.47420 * 120.00031 * 2 1 3 13 13 S 1.81405 * 109.46829 * 300.00280 * 12 2 1 14 14 C 1.81400 * 103.00143 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47602 * 179.97438 * 14 13 12 16 16 C 1.38230 * 119.99896 * 89.99573 * 15 14 13 17 17 C 1.38235 * 120.00005 * 179.72987 * 16 15 14 18 18 C 1.38235 * 120.00017 * 0.25252 * 17 16 15 19 19 C 1.50696 * 120.00326 * 180.02562 * 18 17 16 20 20 F 1.39894 * 109.47233 * 89.99924 * 19 18 17 21 21 F 1.39903 * 109.47253 * 210.00535 * 19 18 17 22 22 F 1.39908 * 109.47061 * 330.00231 * 19 18 17 23 23 C 1.38240 * 119.99857 * 0.02936 * 18 17 16 24 24 C 1.38231 * 120.00048 * 270.23612 * 15 14 13 25 25 H 1.08998 * 109.47308 * 294.24092 * 1 2 3 26 26 H 1.09004 * 109.47039 * 54.23924 * 1 2 3 27 27 H 1.09002 * 109.47276 * 174.24237 * 1 2 3 28 28 H 1.09001 * 109.47448 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47354 * 300.00027 * 3 2 1 30 30 H 1.09000 * 109.47320 * 59.99661 * 3 2 1 31 31 H 0.96998 * 119.99757 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47548 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47423 * 59.99525 * 12 2 1 34 34 H 1.09000 * 109.47092 * 59.99250 * 14 13 12 35 35 H 1.09004 * 109.46882 * 300.00078 * 14 13 12 36 36 H 1.08001 * 120.00398 * 0.02562 * 16 15 14 37 37 H 1.08001 * 120.00221 * 180.28111 * 17 16 15 38 38 H 1.08000 * 119.99812 * 179.97438 * 23 18 17 39 39 H 1.08005 * 120.00066 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6897 -1.5616 -1.1320 6 6 1.6527 -0.2737 -2.4819 7 7 0.9359 0.8220 -2.6066 8 14 2.1561 -1.2383 -4.0003 9 1 1.1787 -2.3302 -4.2397 10 1 2.1834 -0.3316 -5.1761 11 1 3.5067 -1.8197 -3.7920 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1339 2.7303 14 6 2.1331 -0.8515 4.0841 15 6 1.7146 -0.2585 5.4047 16 6 0.5453 -0.6778 6.0111 17 6 0.1643 -0.1379 7.2252 18 6 0.9499 0.8250 7.8305 19 6 0.5349 1.4132 9.1545 20 9 1.0782 0.6511 10.1942 21 9 1.0018 2.7288 9.2472 22 9 -0.8608 1.4059 9.2510 23 6 2.1164 1.2485 7.2213 24 6 2.4976 0.7082 6.0074 25 1 -0.3634 0.4219 0.9370 26 1 -0.3633 0.6006 -0.8339 27 1 -0.3634 -1.0225 -0.1031 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.6685 1.1290 -3.4870 32 1 3.1300 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2493 34 1 3.2208 -0.8479 4.0128 35 1 1.7679 -1.8761 4.0133 36 1 -0.0682 -1.4306 5.5385 37 1 -0.7470 -0.4687 7.7012 38 1 2.7300 2.0011 7.6941 39 1 3.4090 1.0389 5.5316 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643904939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:39 Heat of formation + Delta-G solvation = -153.831137 kcal Electronic energy + Delta-G solvation = -23425.827010 eV Core-core repulsion = 19429.581045 eV Total energy + Delta-G solvation = -3996.245965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.18452 -48.70151 -48.65241 -40.46766 -37.80959 -34.49325 -33.50004 -32.11625 -29.62317 -27.90035 -27.54859 -27.13217 -25.65696 -23.95206 -22.36947 -20.82006 -19.52956 -19.46154 -19.38647 -17.96386 -17.23160 -16.61162 -16.48172 -16.43987 -15.69359 -15.50643 -15.47340 -15.43360 -15.11468 -15.02752 -14.89676 -14.81330 -14.68282 -14.43683 -14.10769 -13.77201 -13.59683 -13.46185 -13.15302 -13.01689 -12.65173 -12.54962 -12.31729 -12.21172 -12.15368 -12.03699 -11.40717 -11.25885 -11.21026 -10.43944 -10.34713 -10.06066 -9.91533 -8.43345 -8.00586 -6.17436 -0.30175 0.28308 1.00291 1.43515 1.45684 1.53142 1.63963 1.84373 2.46678 2.56408 2.70082 3.00807 3.22744 3.41153 3.60812 3.73056 3.88899 4.15619 4.29269 4.35734 4.41097 4.49905 4.56072 4.70689 4.79504 4.94491 4.97530 5.09884 5.13614 5.15287 5.25404 5.26482 5.45633 5.48493 5.67594 5.68494 5.73686 6.11116 6.22763 6.42169 6.88657 7.50246 8.98672 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.038342 B = 0.002298 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.092555 B =12183.070304 C =12260.845543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.074 3.926 3 C -0.120 4.120 4 C -0.526 4.526 5 H 0.052 0.948 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.271 1.271 12 C -0.050 4.050 13 S -0.273 6.273 14 C -0.056 4.056 15 C -0.040 4.040 16 C -0.109 4.109 17 C -0.073 4.073 18 C -0.195 4.195 19 C 0.513 3.487 20 F -0.180 7.180 21 F -0.180 7.180 22 F -0.180 7.180 23 C -0.073 4.073 24 C -0.109 4.109 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -1.695 22.529 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 C -0.178 4.178 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.195 1.195 12 C -0.198 4.198 13 S -0.043 6.043 14 C -0.203 4.203 15 C -0.041 4.041 16 C -0.129 4.129 17 C -0.091 4.091 18 C -0.197 4.197 19 C 0.459 3.541 20 F -0.161 7.161 21 F -0.161 7.161 22 F -0.161 7.161 23 C -0.091 4.091 24 C -0.129 4.129 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.381 -0.679 22.451 22.464 hybrid contribution 0.836 -1.305 -1.029 1.861 sum 1.217 -1.984 21.422 21.548 Atomic orbital electron populations 1.21682 0.97698 0.98979 0.99328 1.17941 0.92696 0.92430 0.89709 1.21704 0.97900 0.98405 0.99744 1.21361 1.29614 1.14253 0.91303 0.92976 1.25565 0.95243 0.95545 1.01251 1.69988 1.38322 1.22381 1.23565 0.85737 0.78704 0.78652 0.79495 1.20356 1.21299 1.19548 1.23532 1.01762 1.00586 0.93915 1.87160 1.71258 1.44736 1.01140 1.22422 1.04241 1.01542 0.92129 1.19611 0.95052 0.95832 0.93607 1.21255 0.95952 1.00847 0.94827 1.21105 0.99135 0.93878 0.94946 1.20074 1.00488 1.03789 0.95343 1.18287 0.74582 0.75804 0.85425 1.93216 1.85780 1.75732 1.61385 1.93187 1.88470 1.37720 1.96734 1.93188 1.29925 1.96284 1.96717 1.21105 0.94516 0.98527 0.94918 1.21255 1.01006 0.95775 0.94854 0.94611 0.92940 0.95962 0.95954 0.92629 0.94992 0.93189 0.91429 0.91350 0.88053 0.88027 0.83397 0.83059 0.83065 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.00 71.98 0.58 -5.07 16 2 C 0.07 3.44 0.52 -52.93 -0.03 3.42 16 3 C -0.12 -5.69 8.04 71.98 0.58 -5.11 16 4 C -0.53 -27.32 8.01 25.60 0.20 -27.12 16 5 H 0.05 2.66 7.75 -2.91 -0.02 2.64 16 6 C 0.02 1.25 5.13 84.65 0.43 1.68 16 7 N -0.90 -49.73 9.45 21.45 0.20 -49.53 16 8 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 C -0.05 -1.92 4.88 71.98 0.35 -1.57 16 13 S -0.27 -8.92 18.68 -56.49 -1.06 -9.97 16 14 C -0.06 -1.28 6.07 71.23 0.43 -0.84 16 15 C -0.04 -0.82 5.14 -19.87 -0.10 -0.92 16 16 C -0.11 -2.05 9.70 22.27 0.22 -1.84 16 17 C -0.07 -1.28 9.40 22.27 0.21 -1.07 16 18 C -0.19 -3.62 5.45 -19.87 -0.11 -3.72 16 19 C 0.51 9.49 3.36 71.23 0.24 9.73 16 20 F -0.18 -3.40 17.30 44.97 0.78 -2.62 16 21 F -0.18 -3.46 16.46 44.97 0.74 -2.72 16 22 F -0.18 -3.46 16.46 44.97 0.74 -2.72 16 23 C -0.07 -1.29 9.40 22.27 0.21 -1.08 16 24 C -0.11 -2.06 9.70 22.27 0.22 -1.84 16 25 H 0.04 1.56 6.71 -2.39 -0.02 1.54 16 26 H 0.05 2.76 6.24 -2.39 -0.01 2.75 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 2.95 6.10 -2.38 -0.01 2.93 16 30 H 0.03 1.40 6.91 -2.39 -0.02 1.38 16 31 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.15 2.10 7.60 -2.91 -0.02 2.08 16 38 H 0.15 2.11 7.60 -2.91 -0.02 2.08 16 39 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -56.92 344.10 7.92 -49.00 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.06 Total: 9.75 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.43 Total: -35.35 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.20 Total: -49.53 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 2.26 Total: -8.05 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.06 Total: -9.97 kcal Total: -56.92 7.92 -49.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643904939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.829 kcal (2) G-P(sol) polarization free energy of solvation -56.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds