Wall clock time and date at job start Tue Mar 31 2020 12:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46701 * 215.15902 * 3 2 1 5 5 N 1.46499 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00380 * 270.00332 * 5 4 3 7 7 C 1.50700 * 109.47258 * 269.99916 * 6 5 4 8 8 H 1.07998 * 119.99471 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99805 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00069 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99670 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47187 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47313 * 119.99791 * 11 9 7 14 14 H 1.48498 * 109.47243 * 240.00223 * 11 9 7 15 15 C 1.34776 * 119.99685 * 89.99962 * 5 4 3 16 16 O 1.21282 * 120.00277 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99904 * 0.02562 * 15 5 4 18 18 O 1.45206 * 109.46981 * 179.97438 * 17 15 5 19 19 C 1.34682 * 116.99954 * 179.97438 * 18 17 15 20 20 O 1.21431 * 119.99641 * 0.02562 * 19 18 17 21 21 C 1.48048 * 119.99856 * 180.02562 * 19 18 17 22 22 C 1.39479 * 120.09851 * 180.02562 * 21 19 18 23 23 N 1.32079 * 119.86920 * 179.97438 * 22 21 19 24 24 C 1.32136 * 120.07385 * 359.97438 * 23 22 21 25 25 C 1.38750 * 120.20154 * 0.25929 * 24 23 22 26 26 N 1.31786 * 120.13070 * 359.47168 * 25 24 23 27 27 H 1.08997 * 109.46757 * 95.16318 * 3 2 1 28 28 H 1.08997 * 109.47230 * 335.15559 * 3 2 1 29 29 H 1.09005 * 109.46900 * 60.00610 * 4 3 2 30 30 H 1.08997 * 109.47402 * 300.00461 * 4 3 2 31 31 H 1.09003 * 109.47133 * 30.00036 * 6 5 4 32 32 H 1.09008 * 109.47016 * 149.99518 * 6 5 4 33 33 H 0.97002 * 119.99538 * 180.02562 * 10 9 7 34 34 H 1.08992 * 109.47416 * 60.00099 * 17 15 5 35 35 H 1.08996 * 109.47168 * 299.99485 * 17 15 5 36 36 H 1.07999 * 120.06561 * 0.02562 * 22 21 19 37 37 H 1.08002 * 119.89676 * 179.97438 * 24 23 22 38 38 H 1.08000 * 119.93785 * 179.71571 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1802 0.8307 5 7 4.5824 1.1806 0.8313 6 6 5.3148 0.4504 1.8688 7 6 5.5653 1.3616 3.0427 8 1 5.2144 2.3827 3.0180 9 6 6.2433 0.8920 4.1475 10 7 6.6710 -0.3513 4.1772 11 14 6.5544 2.0218 5.6023 12 1 5.9771 3.3608 5.3215 13 1 5.9172 1.4522 6.8165 14 1 8.0170 2.1508 5.8249 15 6 5.2564 1.8528 -0.1229 16 8 6.4692 1.8529 -0.1227 17 6 4.5030 2.6045 -1.1899 18 8 5.4467 3.2406 -2.0917 19 6 4.9321 3.9569 -3.1095 20 8 3.7282 4.0482 -3.2399 21 6 5.8341 4.6331 -4.0692 22 6 5.3034 5.3759 -5.1237 23 7 6.1123 5.9777 -5.9769 24 6 7.4217 5.8767 -5.8317 25 6 7.9529 5.1345 -4.7867 26 7 7.1533 4.5352 -3.9276 27 1 2.9713 0.0933 -1.0235 28 1 2.9718 -0.9317 0.4318 29 1 2.7541 1.0876 1.8542 30 1 2.7536 2.1126 0.3990 31 1 4.7258 -0.4073 2.1939 32 1 6.2675 0.1055 1.4667 33 1 7.1476 -0.6817 4.9547 34 1 3.8763 3.3653 -0.7247 35 1 3.8765 1.9102 -1.7498 36 1 4.2331 5.4596 -5.2417 37 1 8.0805 6.3696 -6.5313 38 1 9.0239 5.0510 -4.6747 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645517004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:33 Heat of formation + Delta-G solvation = -29.088524 kcal Electronic energy + Delta-G solvation = -25219.165287 eV Core-core repulsion = 21256.184845 eV Total energy + Delta-G solvation = -3962.980442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70467 -40.40073 -39.14924 -36.96134 -36.53492 -35.29117 -34.85929 -32.95748 -32.29277 -30.92639 -29.45276 -27.02022 -25.88713 -25.00576 -24.10583 -22.93222 -21.76724 -19.03532 -18.74337 -17.96629 -17.65896 -17.29181 -16.95873 -16.81273 -16.47050 -16.24755 -15.62747 -15.27400 -15.05072 -14.75792 -14.48214 -14.26514 -13.73459 -13.59116 -13.24485 -12.89919 -12.71541 -12.49208 -12.26801 -12.14015 -12.11200 -11.80850 -11.76357 -11.34580 -11.18603 -11.08482 -10.97779 -10.74337 -10.67370 -10.23173 -9.99573 -9.74699 -9.64444 -9.15239 -8.51234 -7.97156 -6.12882 -4.17657 -0.18539 0.57447 2.03997 2.07021 2.69720 2.79535 3.09671 3.26577 3.27305 3.34952 3.36664 3.41655 3.66443 3.68244 3.89736 4.10112 4.37944 4.43697 4.61808 4.71702 4.76280 4.89771 4.97977 5.01785 5.10515 5.13964 5.23108 5.41133 5.72609 5.75068 5.98711 6.02164 6.62498 6.81453 7.10689 7.25608 7.33001 7.44460 7.55391 7.83049 8.08066 8.11995 8.70913 8.88639 9.48150 10.95355 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011046 B = 0.003359 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.135772 B = 8333.707102 C =10332.466745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.112 3.888 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.509 3.491 16 O -0.504 6.504 17 C 0.043 3.957 18 O -0.302 6.302 19 C 0.527 3.473 20 O -0.495 6.495 21 C 0.045 3.955 22 C 0.116 3.884 23 N -0.441 5.441 24 C 0.080 3.920 25 C 0.051 3.949 26 N -0.379 5.379 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.186 0.814 37 H 0.181 0.819 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 8.369 -18.243 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.128 3.872 7 C -0.570 4.570 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.293 3.707 16 O -0.378 6.378 17 C -0.035 4.035 18 O -0.214 6.214 19 C 0.368 3.632 20 O -0.382 6.382 21 C -0.094 4.094 22 C -0.043 4.043 23 N -0.155 5.155 24 C -0.081 4.081 25 C -0.112 4.112 26 N -0.097 5.097 27 H 0.123 0.877 28 H 0.138 0.862 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.203 0.797 37 H 0.198 0.802 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.639 8.211 -18.082 20.034 hybrid contribution 0.528 0.512 0.945 1.198 sum -2.111 8.723 -17.137 19.345 Atomic orbital electron populations 1.81215 1.13009 1.08756 1.08963 1.29040 0.95045 0.93130 0.93000 1.19894 0.81526 1.03884 1.03963 1.21405 0.81938 0.96037 1.02032 1.48155 1.04981 1.51072 1.28334 1.19429 0.92705 0.91209 0.83855 1.21446 1.36891 0.98248 1.00394 0.92206 1.24911 0.95199 0.95203 0.98614 1.69925 1.38161 1.14795 1.30239 0.86446 0.78147 0.80808 0.82054 1.19772 1.20963 1.20842 1.19672 0.88196 0.80614 0.82203 1.90766 1.13172 1.59984 1.73850 1.23127 0.91255 0.98053 0.91048 1.86740 1.39069 1.59443 1.36187 1.20544 0.86155 0.76563 0.79935 1.90876 1.14890 1.59310 1.73138 1.21104 0.91463 1.00419 0.96450 1.23858 1.02241 0.89799 0.88388 1.68705 1.04643 1.17189 1.24929 1.24270 0.92588 0.94462 0.96733 1.24063 1.01989 0.93930 0.91174 1.68580 1.02981 1.14037 1.24068 0.87653 0.86194 0.88160 0.90620 0.94279 0.93311 0.92652 0.88142 0.88369 0.79684 0.80238 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.48 18.54 42.15 0.78 -5.70 16 2 C 0.22 2.57 15.43 -20.76 -0.32 2.25 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 4 C 0.11 1.43 5.17 -4.04 -0.02 1.41 16 5 N -0.59 -10.52 2.46 -175.05 -0.43 -10.95 16 6 C 0.25 5.67 5.16 -5.19 -0.03 5.64 16 7 C -0.53 -13.92 9.39 -34.44 -0.32 -14.24 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 11 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.51 9.42 7.75 -10.98 -0.09 9.34 16 16 O -0.50 -11.92 16.08 -14.11 -0.23 -12.15 16 17 C 0.04 0.60 4.51 36.01 0.16 0.76 16 18 O -0.30 -4.75 9.59 -47.12 -0.45 -5.20 16 19 C 0.53 7.12 7.95 34.75 0.28 7.39 16 20 O -0.49 -6.77 16.14 -19.21 -0.31 -7.08 16 21 C 0.04 0.53 6.75 -82.86 -0.56 -0.03 16 22 C 0.12 1.10 10.77 -16.98 -0.18 0.92 16 23 N -0.44 -3.86 10.49 -12.69 -0.13 -4.00 16 24 C 0.08 0.51 11.23 -17.23 -0.19 0.31 16 25 C 0.05 0.39 11.22 -17.38 -0.20 0.20 16 26 N -0.38 -4.54 10.28 -9.63 -0.10 -4.64 16 27 H 0.11 0.85 7.22 -51.93 -0.38 0.48 16 28 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 1.29 7.42 -51.92 -0.39 0.90 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.10 1.24 7.40 -51.93 -0.38 0.85 16 35 H 0.10 1.08 7.18 -51.93 -0.37 0.70 16 36 H 0.19 1.44 7.65 -52.49 -0.40 1.04 16 37 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 38 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -35.95 354.36 -5.46 -41.42 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.90 Total: -3.54 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -1.74 Total: 14.86 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.86 Total: -49.64 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.99 Total: -24.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.95 -5.46 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645517004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.327 kcal (2) G-P(sol) polarization free energy of solvation -35.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds