Wall clock time and date at job start Tue Mar 31 2020 12:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46701 * 215.15902 * 3 2 1 5 5 N 1.46499 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00380 * 270.00332 * 5 4 3 7 7 C 1.50700 * 109.47258 * 269.99916 * 6 5 4 8 8 H 1.07998 * 119.99471 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99805 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00069 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99670 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47187 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47313 * 119.99791 * 11 9 7 14 14 H 1.48498 * 109.47243 * 240.00223 * 11 9 7 15 15 C 1.34776 * 119.99685 * 89.99962 * 5 4 3 16 16 O 1.21282 * 120.00277 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99904 * 0.02562 * 15 5 4 18 18 O 1.45206 * 109.46981 * 179.97438 * 17 15 5 19 19 C 1.34682 * 116.99954 * 179.97438 * 18 17 15 20 20 O 1.21431 * 119.99641 * 0.02562 * 19 18 17 21 21 C 1.48048 * 119.99856 * 180.02562 * 19 18 17 22 22 C 1.39479 * 120.09851 * 180.02562 * 21 19 18 23 23 N 1.32079 * 119.86920 * 179.97438 * 22 21 19 24 24 C 1.32136 * 120.07385 * 359.97438 * 23 22 21 25 25 C 1.38750 * 120.20154 * 0.25929 * 24 23 22 26 26 N 1.31786 * 120.13070 * 359.47168 * 25 24 23 27 27 H 1.08997 * 109.46757 * 95.16318 * 3 2 1 28 28 H 1.08997 * 109.47230 * 335.15559 * 3 2 1 29 29 H 1.09005 * 109.46900 * 60.00610 * 4 3 2 30 30 H 1.08997 * 109.47402 * 300.00461 * 4 3 2 31 31 H 1.09003 * 109.47133 * 30.00036 * 6 5 4 32 32 H 1.09008 * 109.47016 * 149.99518 * 6 5 4 33 33 H 0.97002 * 119.99538 * 180.02562 * 10 9 7 34 34 H 1.08992 * 109.47416 * 60.00099 * 17 15 5 35 35 H 1.08996 * 109.47168 * 299.99485 * 17 15 5 36 36 H 1.07999 * 120.06561 * 0.02562 * 22 21 19 37 37 H 1.08002 * 119.89676 * 179.97438 * 24 23 22 38 38 H 1.08000 * 119.93785 * 179.71571 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1802 0.8307 5 7 4.5824 1.1806 0.8313 6 6 5.3148 0.4504 1.8688 7 6 5.5653 1.3616 3.0427 8 1 5.2144 2.3827 3.0180 9 6 6.2433 0.8920 4.1475 10 7 6.6710 -0.3513 4.1772 11 14 6.5544 2.0218 5.6023 12 1 5.9771 3.3608 5.3215 13 1 5.9172 1.4522 6.8165 14 1 8.0170 2.1508 5.8249 15 6 5.2564 1.8528 -0.1229 16 8 6.4692 1.8529 -0.1227 17 6 4.5030 2.6045 -1.1899 18 8 5.4467 3.2406 -2.0917 19 6 4.9321 3.9569 -3.1095 20 8 3.7282 4.0482 -3.2399 21 6 5.8341 4.6331 -4.0692 22 6 5.3034 5.3759 -5.1237 23 7 6.1123 5.9777 -5.9769 24 6 7.4217 5.8767 -5.8317 25 6 7.9529 5.1345 -4.7867 26 7 7.1533 4.5352 -3.9276 27 1 2.9713 0.0933 -1.0235 28 1 2.9718 -0.9317 0.4318 29 1 2.7541 1.0876 1.8542 30 1 2.7536 2.1126 0.3990 31 1 4.7258 -0.4073 2.1939 32 1 6.2675 0.1055 1.4667 33 1 7.1476 -0.6817 4.9547 34 1 3.8763 3.3653 -0.7247 35 1 3.8765 1.9102 -1.7498 36 1 4.2331 5.4596 -5.2417 37 1 8.0805 6.3696 -6.5313 38 1 9.0239 5.0510 -4.6747 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645517004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:32 Heat of formation + Delta-G solvation = -53.757333 kcal Electronic energy + Delta-G solvation = -25220.235007 eV Core-core repulsion = 21256.184845 eV Total energy + Delta-G solvation = -3964.050162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45025 -41.44500 -40.49881 -38.07319 -37.63180 -36.70836 -35.54961 -34.87933 -32.97578 -32.22057 -30.80089 -28.58684 -26.78206 -25.69341 -25.36297 -24.55537 -22.75485 -20.36009 -19.70513 -18.95753 -18.65581 -18.35329 -18.05900 -17.85662 -17.81804 -17.47018 -16.99575 -16.32137 -16.16983 -15.77757 -15.65180 -15.54463 -14.87191 -14.61885 -14.43263 -14.10121 -13.84863 -13.74035 -13.58316 -13.54676 -13.18251 -12.96165 -12.79685 -12.71935 -12.53954 -12.49333 -12.20246 -12.17251 -12.07500 -11.77016 -11.64780 -10.71514 -10.63429 -10.58547 -10.28919 -9.57339 -8.18278 -6.29910 -0.88269 -0.07173 1.06214 1.15626 1.40174 1.43105 1.53042 1.59125 1.78857 1.84027 2.23342 2.43997 2.59798 2.86026 3.06284 3.12029 3.14795 3.25157 3.55179 3.63081 3.89740 3.98736 4.00256 4.09521 4.13040 4.26609 4.47944 4.53681 4.80899 4.94611 5.02769 5.11357 5.19386 5.33133 5.57045 5.83733 5.97945 6.11667 6.33260 6.56207 6.59996 6.63952 6.79424 7.26270 7.42807 8.88951 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011046 B = 0.003359 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.135772 B = 8333.707102 C =10332.466745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.245 3.755 3 C -0.040 4.040 4 C 0.107 3.893 5 N -0.589 5.589 6 C 0.260 3.740 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.957 3.043 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.285 1.285 15 C 0.506 3.494 16 O -0.567 6.567 17 C 0.050 3.950 18 O -0.329 6.329 19 C 0.529 3.471 20 O -0.502 6.502 21 C 0.015 3.985 22 C 0.122 3.878 23 N -0.456 5.456 24 C 0.104 3.896 25 C 0.053 3.947 26 N -0.423 5.423 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.043 0.957 32 H 0.007 0.993 33 H 0.266 0.734 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.196 0.804 37 H 0.227 0.773 38 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 9.901 -19.783 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.072 4.072 3 C -0.081 4.081 4 C -0.017 4.017 5 N -0.321 5.321 6 C 0.140 3.860 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.211 1.211 15 C 0.293 3.707 16 O -0.445 6.445 17 C -0.027 4.027 18 O -0.243 6.243 19 C 0.371 3.629 20 O -0.390 6.390 21 C -0.122 4.122 22 C -0.035 4.035 23 N -0.170 5.170 24 C -0.058 4.058 25 C -0.111 4.111 26 N -0.141 5.141 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.213 0.787 37 H 0.244 0.756 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.096 9.744 -19.626 22.130 hybrid contribution 0.755 0.088 1.321 1.524 sum -2.341 9.833 -18.305 20.910 Atomic orbital electron populations 1.81259 1.14425 1.10244 1.10656 1.29108 0.94914 0.91704 0.91479 1.19850 0.80181 1.02892 1.05152 1.21653 0.78595 0.98734 1.02767 1.47985 1.06952 1.50172 1.26992 1.18906 0.91697 0.91329 0.84090 1.21782 1.36491 0.98366 1.01423 0.92732 1.25697 0.95183 0.96511 1.01290 1.70022 1.39044 1.16265 1.31074 0.85516 0.77701 0.79188 0.79299 1.19313 1.19840 1.21122 1.20430 0.87696 0.79926 0.82681 1.90733 1.16061 1.62188 1.75528 1.23100 0.90396 0.98903 0.90262 1.86729 1.40233 1.60215 1.37087 1.20861 0.86505 0.76044 0.79481 1.90848 1.15102 1.59733 1.73340 1.20978 0.91556 1.02333 0.97319 1.23977 1.02928 0.88991 0.87635 1.68817 1.05801 1.17547 1.24852 1.25028 0.92168 0.92412 0.96188 1.24695 1.03071 0.92892 0.90482 1.68487 1.03575 1.15860 1.26181 0.84778 0.85544 0.88799 0.87655 0.93866 0.97461 0.92528 0.85970 0.84733 0.78682 0.75638 0.76899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.61 18.54 20.01 0.37 -13.24 16 2 C 0.25 5.31 15.43 89.44 1.38 6.69 16 3 C -0.04 -0.70 6.03 28.79 0.17 -0.52 16 4 C 0.11 2.51 5.17 86.38 0.45 2.96 16 5 N -0.59 -20.78 2.46 -826.14 -2.03 -22.81 16 6 C 0.26 12.29 5.16 85.63 0.44 12.73 16 7 C -0.54 -28.88 9.39 25.60 0.24 -28.64 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.69 5.46 84.66 0.46 1.15 16 10 N -0.92 -52.94 13.29 21.45 0.28 -52.65 16 11 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 15 C 0.51 18.78 7.75 87.66 0.68 19.46 16 16 O -0.57 -27.90 16.08 15.76 0.25 -27.65 16 17 C 0.05 1.33 4.51 71.24 0.32 1.65 16 18 O -0.33 -10.32 9.59 -49.52 -0.47 -10.80 16 19 C 0.53 14.07 7.95 70.43 0.56 14.63 16 20 O -0.50 -13.15 16.14 20.06 0.32 -12.83 16 21 C 0.02 0.35 6.75 41.86 0.28 0.63 16 22 C 0.12 2.18 10.77 84.95 0.92 3.09 16 23 N -0.46 -6.95 10.49 -194.08 -2.04 -8.99 16 24 C 0.10 0.97 11.23 84.77 0.95 1.92 16 25 C 0.05 0.69 11.22 84.82 0.95 1.64 16 26 N -0.42 -9.91 10.28 -184.37 -1.90 -11.81 16 27 H 0.13 1.68 7.22 -2.39 -0.02 1.67 16 28 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 2.38 8.07 -2.38 -0.02 2.36 16 30 H 0.11 1.90 6.44 -2.39 -0.02 1.88 16 31 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 32 H 0.01 0.40 7.42 -2.38 -0.02 0.39 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.12 2.72 7.40 -2.39 -0.02 2.71 16 35 H 0.14 2.56 7.18 -2.39 -0.02 2.54 16 36 H 0.20 2.84 7.65 -2.91 -0.02 2.82 16 37 H 0.23 -0.13 8.06 -2.91 -0.02 -0.15 16 38 H 0.21 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -82.27 354.36 5.75 -76.52 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.12 Total: 1.46 kcal Atomic # 6 Polarization: 29.59 SS G_CDS: 7.81 Total: 37.40 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -5.30 Total: -109.49 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: 0.10 Total: -51.28 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -82.27 5.75 -76.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645517004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.767 kcal (2) G-P(sol) polarization free energy of solvation -82.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds