Wall clock time and date at job start Tue Mar 31 2020 12:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 270.02676 * 15 14 13 17 17 O 1.21279 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99612 * 179.97438 * 16 15 14 19 19 C 1.46498 * 119.99835 * 179.97438 * 18 16 15 20 20 C 1.50710 * 109.47168 * 179.97438 * 19 18 16 21 21 N 1.30886 * 125.91139 * 275.02527 * 20 19 18 22 22 C 1.33537 * 109.77942 * 179.97438 * 21 20 19 23 23 O 1.35866 * 125.58568 * 180.02562 * 22 21 20 24 24 N 1.31066 * 108.82425 * 0.02562 * 22 21 20 25 25 N 1.34349 * 125.90991 * 94.71606 * 20 19 18 26 26 H 0.96999 * 126.77682 * 359.97438 * 25 20 19 27 27 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 28 28 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 29 29 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 33 33 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 34 34 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 35 35 H 1.09006 * 109.47222 * 299.99865 * 19 18 16 36 36 H 1.08999 * 109.47323 * 59.99954 * 19 18 16 37 37 H 0.96708 * 114.00345 * 90.00334 * 23 22 21 38 38 H 1.07998 * 120.03894 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3954 -3.8605 1.8902 18 7 9.4398 -3.9345 1.0318 19 6 10.0443 -4.0176 2.3636 20 6 11.5437 -4.0920 2.2309 21 7 12.2437 -5.1797 2.0304 22 6 13.5422 -4.8755 1.9634 23 8 14.5525 -5.7616 1.7634 24 7 13.6823 -3.5821 2.1223 25 7 12.3927 -3.0526 2.2921 26 1 12.1609 -2.1206 2.4283 27 6 5.3550 -2.4724 -0.2267 28 1 -0.4849 0.8401 -0.0004 29 1 2.1493 -3.5267 0.0145 30 1 3.2703 -5.7081 -0.1879 31 1 5.7198 -5.8205 -0.4034 32 1 7.7494 -4.6563 -1.0449 33 1 7.8421 -2.8801 -0.9753 34 1 10.0035 -3.9337 0.2424 35 1 9.7737 -3.1338 2.9413 36 1 9.6803 -4.9100 2.8728 37 1 14.7731 -5.9031 0.8325 38 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647122654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:05 Heat of formation + Delta-G solvation = 22.435771 kcal Electronic energy + Delta-G solvation = -24579.834398 eV Core-core repulsion = 20619.088217 eV Total energy + Delta-G solvation = -3960.746181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85613 -40.02077 -38.97156 -38.01831 -36.71442 -35.25668 -32.91799 -32.52569 -32.29300 -31.54562 -29.48046 -28.23444 -26.38939 -25.12695 -23.16515 -21.98224 -21.70346 -21.26996 -20.31135 -19.24159 -18.26865 -17.73626 -17.38040 -17.12383 -16.68759 -16.12487 -15.77933 -15.19645 -14.87197 -14.62363 -14.57420 -14.10116 -13.86996 -13.61775 -13.53805 -13.38080 -12.81771 -12.59481 -12.52613 -12.37321 -12.17988 -11.72292 -11.31923 -10.85754 -10.81367 -10.79376 -10.72431 -10.54697 -10.38747 -10.16189 -9.90917 -9.50875 -9.38323 -8.86259 -8.15735 -7.35511 -6.39859 -4.06557 0.72709 1.72490 1.88324 2.07204 2.29262 2.53647 2.74597 3.08279 3.22383 3.25198 3.40380 3.79196 4.13504 4.24512 4.43392 4.69067 4.80397 4.88081 5.05076 5.10616 5.17351 5.28959 5.31073 5.44700 5.52854 5.67323 5.84293 5.91981 6.12082 6.25126 6.29234 6.52295 6.78560 6.84913 7.09127 7.12420 7.20927 7.32502 7.33056 7.61130 7.82090 8.03921 8.05678 8.95561 9.58364 10.67974 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.002258 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.667429 B =12396.557615 C =13305.301404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.159 3.841 11 C -0.216 4.216 12 C -0.076 4.076 13 C -0.187 4.187 14 C -0.038 4.038 15 C -0.091 4.091 16 C 0.519 3.481 17 O -0.511 6.511 18 N -0.736 5.736 19 C 0.199 3.801 20 C 0.290 3.710 21 N -0.529 5.529 22 C 0.404 3.596 23 O -0.438 6.438 24 N -0.304 5.304 25 N -0.456 5.456 26 H 0.450 0.550 27 C -0.175 4.175 28 H 0.279 0.721 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.410 0.590 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.599 -7.612 -0.559 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.125 6.125 10 C 0.108 3.892 11 C -0.235 4.235 12 C -0.094 4.094 13 C -0.206 4.206 14 C -0.038 4.038 15 C -0.131 4.131 16 C 0.306 3.694 17 O -0.383 6.383 18 N -0.393 5.393 19 C 0.073 3.927 20 C 0.010 3.990 21 N -0.267 5.267 22 C 0.085 3.915 23 O -0.238 6.238 24 N -0.147 5.147 25 N -0.179 5.179 26 H 0.298 0.702 27 C -0.194 4.194 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.237 0.763 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.268 0.732 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 24.652 -7.438 0.747 25.760 hybrid contribution 0.332 1.147 -0.712 1.390 sum 24.983 -6.291 0.035 25.763 Atomic orbital electron populations 1.69648 1.05537 1.28403 1.48295 1.24461 0.95029 0.98784 0.95803 0.86181 0.80350 0.81506 0.78853 1.19947 1.20831 1.18401 1.20762 0.76902 0.96611 1.52112 0.87645 1.83564 1.22584 1.25641 1.80667 1.19013 0.91534 0.85555 0.93124 1.21313 1.01189 0.91970 1.09026 1.20749 0.94162 0.96757 0.97758 1.20432 0.93924 0.96462 1.09758 1.18627 0.91867 0.93063 1.00280 1.20572 0.93909 1.04826 0.93776 1.20829 0.80737 0.75500 0.92364 1.90799 1.60832 1.46892 1.39810 1.45953 1.07520 1.78157 1.07656 1.19686 0.80129 1.05792 0.87109 1.24096 0.95539 0.82927 0.96413 1.70332 1.03330 1.28547 1.24532 1.21170 0.86078 0.85690 0.98566 1.84940 1.47587 1.58729 1.32578 1.78277 0.98879 1.10215 1.27280 1.47854 1.03382 1.11266 1.55413 0.70239 1.19928 0.91996 0.96938 1.10558 0.91110 0.84982 0.87127 0.87619 0.87976 0.88076 0.76274 0.88425 0.87159 0.73209 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.48 0.77 -24.70 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.63 28.62 -169.99 -4.86 16.76 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 9 O -0.22 -5.80 8.59 0.05 0.00 -5.80 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.22 -4.70 9.17 -39.40 -0.36 -5.06 16 12 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.19 -3.09 9.70 -39.54 -0.38 -3.48 16 14 C -0.04 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -0.98 5.83 -29.03 -0.17 -1.15 16 16 C 0.52 5.96 7.82 -10.99 -0.09 5.88 16 17 O -0.51 -8.37 16.03 5.56 0.09 -8.28 16 18 N -0.74 -5.46 5.55 -61.47 -0.34 -5.80 16 19 C 0.20 1.39 6.30 -5.19 -0.03 1.35 16 20 C 0.29 2.12 7.60 -155.72 -1.18 0.93 16 21 N -0.53 -5.13 11.21 -12.10 -0.14 -5.26 16 22 C 0.40 3.82 9.46 -91.25 -0.86 2.95 16 23 O -0.44 -3.31 13.66 -19.32 -0.26 -3.58 16 24 N -0.30 -2.76 12.81 29.18 0.37 -2.39 16 25 N -0.46 -2.87 7.44 32.62 0.24 -2.63 16 26 H 0.45 1.40 8.96 -182.34 -1.63 -0.24 16 27 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 28 H 0.28 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.13 3.01 5.64 -52.48 -0.30 2.72 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.40 2.05 8.46 -40.82 -0.35 1.71 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 0.81 9.06 45.56 0.41 1.22 16 38 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -37.00 343.71 -7.54 -44.54 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.24 Total: 2.75 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -4.36 Total: -10.79 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.91 Total: -40.78 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.17 Total: -17.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.00 -7.54 -44.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647122654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.977 kcal (2) G-P(sol) polarization free energy of solvation -36.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds