Wall clock time and date at job start Tue Mar 31 2020 12:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 270.02676 * 15 14 13 17 17 O 1.21279 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99612 * 179.97438 * 16 15 14 19 19 C 1.46498 * 119.99835 * 179.97438 * 18 16 15 20 20 C 1.50710 * 109.47168 * 179.97438 * 19 18 16 21 21 N 1.30886 * 125.91139 * 275.02527 * 20 19 18 22 22 C 1.33537 * 109.77942 * 179.97438 * 21 20 19 23 23 O 1.35866 * 125.58568 * 180.02562 * 22 21 20 24 24 N 1.31066 * 108.82425 * 0.02562 * 22 21 20 25 25 N 1.34349 * 125.90991 * 94.71606 * 20 19 18 26 26 H 0.96999 * 126.77682 * 359.97438 * 25 20 19 27 27 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 28 28 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 29 29 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 33 33 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 34 34 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 35 35 H 1.09006 * 109.47222 * 299.99865 * 19 18 16 36 36 H 1.08999 * 109.47323 * 59.99954 * 19 18 16 37 37 H 0.96708 * 114.00345 * 90.00334 * 23 22 21 38 38 H 1.07998 * 120.03894 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3954 -3.8605 1.8902 18 7 9.4398 -3.9345 1.0318 19 6 10.0443 -4.0176 2.3636 20 6 11.5437 -4.0920 2.2309 21 7 12.2437 -5.1797 2.0304 22 6 13.5422 -4.8755 1.9634 23 8 14.5525 -5.7616 1.7634 24 7 13.6823 -3.5821 2.1223 25 7 12.3927 -3.0526 2.2921 26 1 12.1609 -2.1206 2.4283 27 6 5.3550 -2.4724 -0.2267 28 1 -0.4849 0.8401 -0.0004 29 1 2.1493 -3.5267 0.0145 30 1 3.2703 -5.7081 -0.1879 31 1 5.7198 -5.8205 -0.4034 32 1 7.7494 -4.6563 -1.0449 33 1 7.8421 -2.8801 -0.9753 34 1 10.0035 -3.9337 0.2424 35 1 9.7737 -3.1338 2.9413 36 1 9.6803 -4.9100 2.8728 37 1 14.7731 -5.9031 0.8325 38 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647122654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:04 Heat of formation + Delta-G solvation = -10.949399 kcal Electronic energy + Delta-G solvation = -24581.282087 eV Core-core repulsion = 20619.088217 eV Total energy + Delta-G solvation = -3962.193871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45072 -41.15081 -40.43083 -38.58664 -38.27770 -36.05212 -34.46022 -33.60655 -33.49341 -32.31722 -31.04536 -29.22955 -27.47656 -26.96761 -23.77337 -23.36191 -22.74175 -22.24980 -21.45034 -19.86961 -19.62077 -18.96911 -18.72319 -18.04491 -17.44074 -16.88563 -16.85087 -16.75749 -16.22230 -15.75216 -15.62023 -15.30927 -15.25637 -14.96620 -14.55054 -14.42156 -14.21414 -14.01985 -13.88814 -13.35712 -13.05633 -13.01633 -12.73900 -12.49238 -12.41092 -12.30644 -11.90436 -11.41378 -11.28504 -11.17143 -11.12963 -10.89336 -10.73787 -10.23045 -9.63120 -9.02910 -8.48180 -6.20854 0.14171 0.52928 0.74111 1.22296 1.31611 1.35324 1.37390 1.52887 1.68280 2.13144 2.29494 2.39899 2.81587 3.08244 3.18271 3.27575 3.57839 3.79821 4.09867 4.13104 4.32102 4.35692 4.48167 4.55118 4.60522 4.70885 4.75974 4.80825 4.86112 5.00865 5.23461 5.29904 5.42686 5.68708 5.76690 5.79664 5.88599 5.94461 6.28090 6.47292 6.48507 6.74379 6.86135 7.24524 7.61392 8.63621 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.002258 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.667429 B =12396.557615 C =13305.301404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.398 4.398 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.116 3.884 11 C -0.241 4.241 12 C -0.080 4.080 13 C -0.170 4.170 14 C -0.028 4.028 15 C -0.089 4.089 16 C 0.524 3.476 17 O -0.568 6.568 18 N -0.714 5.714 19 C 0.202 3.798 20 C 0.300 3.700 21 N -0.555 5.555 22 C 0.397 3.603 23 O -0.449 6.449 24 N -0.323 5.323 25 N -0.441 5.441 26 H 0.464 0.536 27 C -0.179 4.179 28 H 0.284 0.716 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.431 0.569 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.278 -8.271 -1.398 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.260 4.260 12 C -0.098 4.098 13 C -0.188 4.188 14 C -0.029 4.029 15 C -0.128 4.128 16 C 0.312 3.688 17 O -0.445 6.445 18 N -0.370 5.370 19 C 0.076 3.924 20 C 0.020 3.980 21 N -0.294 5.294 22 C 0.077 3.923 23 O -0.252 6.252 24 N -0.166 5.166 25 N -0.165 5.165 26 H 0.314 0.686 27 C -0.198 4.198 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.292 0.708 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 28.407 -8.123 -0.139 29.546 hybrid contribution -0.564 1.031 -0.471 1.266 sum 27.844 -7.092 -0.610 28.739 Atomic orbital electron populations 1.69739 1.06925 1.29533 1.50407 1.25319 0.95938 1.02259 0.95632 0.85179 0.78703 0.77218 0.79359 1.18757 1.19323 1.18794 1.20694 0.78205 0.96042 1.52518 0.90420 1.83500 1.21113 1.27405 1.83421 1.19630 0.93274 0.85046 0.95260 1.21323 1.00149 0.93579 1.10995 1.21107 0.95657 0.96178 0.96873 1.21035 0.93112 0.98556 1.06127 1.19217 0.95243 0.91464 0.96983 1.20696 0.89559 1.08390 0.94176 1.20838 0.81486 0.74718 0.91772 1.90805 1.62290 1.49952 1.41445 1.45672 1.06472 1.76242 1.08629 1.19699 0.79672 1.06208 0.86809 1.23981 0.95405 0.82741 0.95848 1.70315 1.03716 1.29733 1.25666 1.21342 0.86331 0.85975 0.98620 1.84890 1.47168 1.58388 1.34773 1.78231 1.00151 1.10336 1.27903 1.47772 1.02440 1.11864 1.54465 0.68561 1.20302 0.90422 0.99169 1.09868 0.90637 0.87786 0.84462 0.83364 0.83909 0.85041 0.74441 0.87000 0.87912 0.70756 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.96 21.61 0.30 -55.70 16 2 C 0.01 0.38 5.49 84.83 0.47 0.84 16 3 Si 0.97 45.76 28.62 68.60 1.96 47.73 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.40 -23.96 9.95 67.92 0.68 -23.28 16 8 H 0.08 4.93 5.44 -2.91 -0.02 4.91 16 9 O -0.25 -13.66 8.59 -22.74 -0.20 -13.85 16 10 C 0.12 5.57 6.65 22.58 0.15 5.73 16 11 C -0.24 -10.96 9.17 22.39 0.21 -10.76 16 12 C -0.08 -2.83 10.04 22.25 0.22 -2.61 16 13 C -0.17 -5.00 9.70 22.30 0.22 -4.78 16 14 C -0.03 -0.83 4.37 -19.88 -0.09 -0.91 16 15 C -0.09 -1.44 5.83 29.10 0.17 -1.27 16 16 C 0.52 9.93 7.82 87.66 0.69 10.62 16 17 O -0.57 -17.19 16.03 -3.03 -0.05 -17.24 16 18 N -0.71 -7.67 5.55 -466.77 -2.59 -10.26 16 19 C 0.20 2.21 6.30 85.64 0.54 2.75 16 20 C 0.30 3.57 7.60 138.24 1.05 4.62 16 21 N -0.56 -9.52 11.21 -304.31 -3.41 -12.93 16 22 C 0.40 6.76 9.46 180.57 1.71 8.47 16 23 O -0.45 -6.06 13.66 -92.04 -1.26 -7.32 16 24 N -0.32 -5.23 12.81 -174.95 -2.24 -7.47 16 25 N -0.44 -4.41 7.44 -50.71 -0.38 -4.79 16 26 H 0.46 1.57 8.96 -213.11 -1.91 -0.34 16 27 C -0.18 -6.76 9.65 22.39 0.22 -6.55 16 28 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.10 5.22 5.64 -2.91 -0.02 5.20 16 30 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.14 1.26 8.09 -2.38 -0.02 1.24 16 33 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.42 2.22 8.46 -92.71 -0.78 1.43 16 35 H 0.11 0.98 8.14 -2.38 -0.02 0.97 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.43 0.94 9.06 -74.05 -0.67 0.27 16 38 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -85.99 343.71 -3.83 -89.82 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -2.20 Total: 9.14 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 6.22 Total: -17.13 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -8.32 Total: -91.15 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.50 Total: -38.41 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.96 Total: 47.73 kcal Total: -85.99 -3.83 -89.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647122654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.871 kcal (2) G-P(sol) polarization free energy of solvation -85.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds