Wall clock time and date at job start Tue Mar 31 2020 12:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 299.99712 * 3 2 1 6 6 H 1.48506 * 109.47201 * 59.99598 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99708 * 170.15955 * 7 2 1 9 9 C 1.41544 * 119.99830 * 350.16752 * 7 2 1 10 10 C 1.41173 * 120.99163 * 153.73117 * 9 7 2 11 11 C 1.37595 * 119.00940 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11023 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23373 * 359.65377 * 12 11 10 14 14 N 1.39467 * 119.58174 * 180.34224 * 13 12 11 15 15 C 1.34775 * 120.00029 * 5.65811 * 14 13 12 16 16 O 1.21279 * 120.00025 * 5.07897 * 15 14 13 17 17 C 1.50706 * 119.99986 * 185.07695 * 15 14 13 18 18 N 1.46498 * 109.47025 * 179.97438 * 17 15 14 19 19 C 1.46412 * 119.53781 * 269.72712 * 18 17 15 20 20 C 1.53351 * 109.35008 * 144.05126 * 19 18 17 21 21 C 1.50808 * 109.08872 * 46.98965 * 20 19 18 22 22 O 1.21236 * 120.01334 * 145.59189 * 21 20 19 23 23 N 1.34548 * 119.97087 * 325.61667 * 21 20 19 24 24 C 1.34294 * 119.53289 * 89.99828 * 18 17 15 25 25 O 1.21537 * 119.21291 * 5.69509 * 24 18 17 26 26 C 1.38600 * 120.83629 * 0.63836 * 13 12 11 27 27 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.49570 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.44118 * 179.97438 * 11 10 9 30 30 H 0.97002 * 119.99903 * 185.65656 * 14 13 12 31 31 H 1.08993 * 109.47260 * 299.99901 * 17 15 14 32 32 H 1.08998 * 109.47113 * 59.99988 * 17 15 14 33 33 H 1.08995 * 109.46339 * 264.18068 * 19 18 17 34 34 H 1.08999 * 109.45913 * 24.15279 * 19 18 17 35 35 H 1.09002 * 109.69169 * 287.03512 * 20 19 18 36 36 H 1.08995 * 109.43785 * 166.80345 * 20 19 18 37 37 H 0.96993 * 119.51019 * 184.45715 * 23 21 20 38 38 H 1.08003 * 120.59744 * 179.67474 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1593 9 6 1.3154 -2.4294 0.2104 10 6 1.8136 -3.6469 -0.3019 11 6 1.1073 -4.8056 -0.0741 12 7 -0.0215 -4.7930 0.6116 13 6 -0.5280 -3.6789 1.1184 14 7 -1.7205 -3.7306 1.8398 15 6 -2.2904 -4.9204 2.1153 16 8 -1.7211 -5.9490 1.8173 17 6 -3.6351 -4.9727 2.7937 18 7 -4.0340 -6.3700 2.9800 19 6 -4.8098 -7.0444 1.9374 20 6 -4.3736 -8.5118 1.8485 21 6 -4.3134 -9.0936 3.2385 22 8 -4.6082 -10.2550 3.4232 23 7 -3.9329 -8.3230 4.2737 24 6 -3.6876 -7.0126 4.1072 25 8 -3.1395 -6.3939 4.9982 26 6 0.1091 -2.4616 0.9359 27 1 -0.4850 0.8401 -0.0004 28 1 2.7349 -3.6685 -0.8650 29 1 1.4818 -5.7408 -0.4632 30 1 -2.1397 -2.9101 2.1432 31 1 -3.5720 -4.4801 3.7639 32 1 -4.3742 -4.4637 2.1750 33 1 -5.8705 -6.9916 2.1825 34 1 -4.6337 -6.5546 0.9797 35 1 -3.3893 -8.5750 1.3844 36 1 -5.0952 -9.0692 1.2512 37 1 -3.8338 -8.7194 5.1534 38 1 -0.3100 -1.5548 1.3464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649722457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:25 Heat of formation + Delta-G solvation = -48.264109 kcal Electronic energy + Delta-G solvation = -25978.146508 eV Core-core repulsion = 22014.334550 eV Total energy + Delta-G solvation = -3963.811958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81258 -39.74327 -38.97595 -37.82808 -36.28804 -34.80679 -34.33837 -33.79022 -31.72953 -30.58739 -29.20745 -27.33541 -26.04079 -25.28909 -23.36369 -22.07396 -21.72815 -19.98489 -19.18758 -18.51695 -17.90293 -17.73111 -17.24341 -16.66531 -15.94419 -15.46653 -15.25766 -15.04818 -14.80653 -14.65059 -14.53398 -14.24533 -13.97450 -13.63107 -13.40344 -12.96015 -12.83428 -12.66734 -12.54718 -12.04828 -11.77475 -11.46374 -11.22965 -10.96265 -10.85807 -10.45260 -10.39073 -10.34796 -10.17296 -9.86861 -9.79873 -9.45436 -8.99709 -8.04284 -7.79421 -7.10781 -6.80338 -4.67850 1.54483 2.11710 2.45694 2.73819 2.85846 2.97399 2.99260 3.04504 3.12508 3.36474 3.62525 3.81970 4.12720 4.26943 4.62846 4.66488 4.74676 4.92378 5.07970 5.13428 5.24292 5.47473 5.61930 5.73383 5.85242 5.96379 6.26117 6.51188 6.58126 6.74497 6.89807 7.07755 7.15203 7.30207 7.32140 7.40104 7.70019 7.87924 7.97593 8.14359 8.36637 8.63589 8.70438 8.77930 9.60916 10.04379 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.002817 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.737257 B = 9937.322070 C =10373.781843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.141 3.859 10 C -0.281 4.281 11 C 0.117 3.883 12 N -0.554 5.554 13 C 0.334 3.666 14 N -0.655 5.655 15 C 0.481 3.519 16 O -0.475 6.475 17 C 0.107 3.893 18 N -0.598 5.598 19 C 0.114 3.886 20 C -0.159 4.159 21 C 0.528 3.472 22 O -0.509 6.509 23 N -0.674 5.674 24 C 0.717 3.283 25 O -0.553 6.553 26 C -0.237 4.237 27 H 0.281 0.719 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.409 0.591 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.424 0.576 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 -5.698 3.086 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.305 4.305 11 C -0.037 4.037 12 N -0.273 5.273 13 C 0.110 3.890 14 N -0.302 5.302 15 C 0.263 3.737 16 O -0.345 6.345 17 C -0.020 4.020 18 N -0.334 5.334 19 C -0.009 4.009 20 C -0.199 4.199 21 C 0.316 3.684 22 O -0.382 6.382 23 N -0.343 5.343 24 C 0.418 3.582 25 O -0.428 6.428 26 C -0.262 4.262 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.244 0.756 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.266 0.734 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.524 -7.344 3.397 14.911 hybrid contribution 0.731 1.891 0.197 2.037 sum -11.793 -5.454 3.594 13.481 Atomic orbital electron populations 1.69739 1.07566 1.29112 1.35727 1.25948 0.94900 1.01475 0.91960 0.86150 0.80861 0.80479 0.78612 1.18361 1.19865 1.19656 1.19626 0.95892 0.89991 1.42932 0.90008 1.17598 0.90380 0.92290 0.86465 1.21937 1.04120 0.94418 1.10012 1.21734 0.90622 0.96508 0.94862 1.67149 1.15069 1.28043 1.17048 1.18179 0.86568 0.90937 0.93330 1.43375 1.23525 1.08864 1.54446 1.21048 0.87645 0.84515 0.80447 1.90771 1.62484 1.32616 1.48636 1.21395 0.95174 0.81459 1.03946 1.46537 1.56308 1.12846 1.17696 1.21711 0.95052 0.91386 0.92771 1.22317 1.07442 0.96533 0.93622 1.21011 0.73973 0.85961 0.87430 1.90778 1.45123 1.16849 1.85418 1.44228 1.66338 1.09111 1.14585 1.15506 0.78558 0.81102 0.83029 1.91006 1.45226 1.65081 1.41439 1.21678 1.00886 0.95571 1.08075 0.90847 0.87956 0.85945 0.75578 0.86256 0.86700 0.90314 0.87790 0.85884 0.85757 0.73445 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.84 10.70 55.55 0.59 -18.25 16 2 C 0.08 1.76 5.31 -17.34 -0.09 1.67 16 3 Si 0.91 17.55 29.57 -169.99 -5.03 12.52 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.38 9.14 -37.65 -0.34 -11.73 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.62 5.60 -106.55 -0.60 3.02 16 10 C -0.28 -6.74 9.90 -38.70 -0.38 -7.13 16 11 C 0.12 2.74 11.15 -17.68 -0.20 2.54 16 12 N -0.55 -13.58 7.89 -12.52 -0.10 -13.68 16 13 C 0.33 7.74 7.40 -154.71 -1.15 6.60 16 14 N -0.66 -11.77 5.39 -11.49 -0.06 -11.83 16 15 C 0.48 8.11 7.85 -10.98 -0.09 8.02 16 16 O -0.48 -9.98 14.72 5.56 0.08 -9.90 16 17 C 0.11 1.19 5.84 -5.19 -0.03 1.16 16 18 N -0.60 -6.65 2.28 -180.96 -0.41 -7.06 16 19 C 0.11 0.86 6.60 -3.91 -0.03 0.83 16 20 C -0.16 -1.32 6.30 -27.65 -0.17 -1.49 16 21 C 0.53 5.84 7.76 -11.04 -0.09 5.75 16 22 O -0.51 -6.98 17.93 5.60 0.10 -6.88 16 23 N -0.67 -7.64 5.18 -16.02 -0.08 -7.73 16 24 C 0.72 9.56 8.22 -87.73 -0.72 8.84 16 25 O -0.55 -9.26 16.57 5.33 0.09 -9.17 16 26 C -0.24 -5.79 8.61 -38.48 -0.33 -6.12 16 27 H 0.28 5.99 8.29 -40.82 -0.34 5.65 16 28 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 29 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.41 5.83 8.70 -40.82 -0.36 5.48 16 31 H 0.12 1.28 7.27 -51.93 -0.38 0.90 16 32 H 0.12 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.71 8.01 -51.93 -0.42 0.29 16 35 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.42 4.28 8.86 -40.82 -0.36 3.92 16 38 H 0.13 3.23 6.11 -52.48 -0.32 2.91 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -35.10 334.92 -7.89 -43.00 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.91 Total: 11.97 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -4.21 Total: 11.96 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.06 Total: -58.55 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: 0.27 Total: -25.94 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.10 -7.89 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649722457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.268 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds