Wall clock time and date at job start Tue Mar 31 2020 12:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 299.99712 * 3 2 1 6 6 H 1.48506 * 109.47201 * 59.99598 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99708 * 170.15955 * 7 2 1 9 9 C 1.41544 * 119.99830 * 350.16752 * 7 2 1 10 10 C 1.41173 * 120.99163 * 153.73117 * 9 7 2 11 11 C 1.37595 * 119.00940 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11023 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23373 * 359.65377 * 12 11 10 14 14 N 1.39467 * 119.58174 * 180.34224 * 13 12 11 15 15 C 1.34775 * 120.00029 * 5.65811 * 14 13 12 16 16 O 1.21279 * 120.00025 * 5.07897 * 15 14 13 17 17 C 1.50706 * 119.99986 * 185.07695 * 15 14 13 18 18 N 1.46498 * 109.47025 * 179.97438 * 17 15 14 19 19 C 1.46412 * 119.53781 * 269.72712 * 18 17 15 20 20 C 1.53351 * 109.35008 * 144.05126 * 19 18 17 21 21 C 1.50808 * 109.08872 * 46.98965 * 20 19 18 22 22 O 1.21236 * 120.01334 * 145.59189 * 21 20 19 23 23 N 1.34548 * 119.97087 * 325.61667 * 21 20 19 24 24 C 1.34294 * 119.53289 * 89.99828 * 18 17 15 25 25 O 1.21537 * 119.21291 * 5.69509 * 24 18 17 26 26 C 1.38600 * 120.83629 * 0.63836 * 13 12 11 27 27 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.49570 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.44118 * 179.97438 * 11 10 9 30 30 H 0.97002 * 119.99903 * 185.65656 * 14 13 12 31 31 H 1.08993 * 109.47260 * 299.99901 * 17 15 14 32 32 H 1.08998 * 109.47113 * 59.99988 * 17 15 14 33 33 H 1.08995 * 109.46339 * 264.18068 * 19 18 17 34 34 H 1.08999 * 109.45913 * 24.15279 * 19 18 17 35 35 H 1.09002 * 109.69169 * 287.03512 * 20 19 18 36 36 H 1.08995 * 109.43785 * 166.80345 * 20 19 18 37 37 H 0.96993 * 119.51019 * 184.45715 * 23 21 20 38 38 H 1.08003 * 120.59744 * 179.67474 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1593 9 6 1.3154 -2.4294 0.2104 10 6 1.8136 -3.6469 -0.3019 11 6 1.1073 -4.8056 -0.0741 12 7 -0.0215 -4.7930 0.6116 13 6 -0.5280 -3.6789 1.1184 14 7 -1.7205 -3.7306 1.8398 15 6 -2.2904 -4.9204 2.1153 16 8 -1.7211 -5.9490 1.8173 17 6 -3.6351 -4.9727 2.7937 18 7 -4.0340 -6.3700 2.9800 19 6 -4.8098 -7.0444 1.9374 20 6 -4.3736 -8.5118 1.8485 21 6 -4.3134 -9.0936 3.2385 22 8 -4.6082 -10.2550 3.4232 23 7 -3.9329 -8.3230 4.2737 24 6 -3.6876 -7.0126 4.1072 25 8 -3.1395 -6.3939 4.9982 26 6 0.1091 -2.4616 0.9359 27 1 -0.4850 0.8401 -0.0004 28 1 2.7349 -3.6685 -0.8650 29 1 1.4818 -5.7408 -0.4632 30 1 -2.1397 -2.9101 2.1432 31 1 -3.5720 -4.4801 3.7639 32 1 -4.3742 -4.4637 2.1750 33 1 -5.8705 -6.9916 2.1825 34 1 -4.6337 -6.5546 0.9797 35 1 -3.3893 -8.5750 1.3844 36 1 -5.0952 -9.0692 1.2512 37 1 -3.8338 -8.7194 5.1534 38 1 -0.3100 -1.5548 1.3464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649722457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:24 Heat of formation + Delta-G solvation = -73.826679 kcal Electronic energy + Delta-G solvation = -25979.254984 eV Core-core repulsion = 22014.334550 eV Total energy + Delta-G solvation = -3964.920434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.74974 -41.17536 -40.12710 -39.38833 -37.26278 -36.11517 -35.71501 -35.43461 -32.61495 -32.36979 -30.73852 -28.53680 -27.88083 -26.03211 -24.42697 -23.82466 -23.23585 -21.47337 -20.13820 -19.48592 -19.34796 -18.91339 -18.42344 -17.85380 -17.31460 -17.02211 -16.43618 -16.28407 -16.04755 -15.90227 -15.65865 -15.58539 -15.49355 -14.83203 -14.53171 -14.37483 -14.31374 -14.22536 -13.58639 -13.18972 -12.94047 -12.86110 -12.70684 -12.58287 -12.09568 -11.87732 -11.85751 -11.46871 -11.41571 -11.39446 -11.19686 -11.15248 -10.09903 -9.89524 -9.53790 -8.85483 -8.56646 -6.56432 0.61150 0.75323 1.00964 1.22249 1.42914 1.54164 1.56523 1.88571 1.92896 2.04281 2.21813 2.39308 2.83852 3.36888 3.57375 3.67743 3.75600 4.01596 4.11887 4.24086 4.41001 4.44833 4.57403 4.74919 4.83631 4.88073 4.92287 4.93975 5.07737 5.12250 5.26266 5.41127 5.49411 5.66035 5.94484 6.16674 6.25755 6.39510 6.49849 6.62599 6.80667 6.85749 7.00425 7.31887 7.84201 8.30370 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.002817 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.737257 B = 9937.322070 C =10373.781843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.485 4.485 8 H 0.079 0.921 9 C 0.111 3.889 10 C -0.298 4.298 11 C 0.112 3.888 12 N -0.574 5.574 13 C 0.334 3.666 14 N -0.649 5.649 15 C 0.476 3.524 16 O -0.520 6.520 17 C 0.119 3.881 18 N -0.595 5.595 19 C 0.109 3.891 20 C -0.154 4.154 21 C 0.530 3.470 22 O -0.538 6.538 23 N -0.671 5.671 24 C 0.713 3.287 25 O -0.595 6.595 26 C -0.255 4.255 27 H 0.292 0.708 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.425 0.575 31 H 0.127 0.873 32 H 0.169 0.831 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.426 0.574 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 -4.641 2.640 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.515 4.515 8 H 0.098 0.902 9 C 0.103 3.897 10 C -0.322 4.322 11 C -0.042 4.042 12 N -0.294 5.294 13 C 0.108 3.892 14 N -0.298 5.298 15 C 0.262 3.738 16 O -0.392 6.392 17 C -0.008 4.008 18 N -0.330 5.330 19 C -0.012 4.012 20 C -0.193 4.193 21 C 0.320 3.680 22 O -0.412 6.412 23 N -0.339 5.339 24 C 0.415 3.585 25 O -0.472 6.472 26 C -0.281 4.281 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.165 0.835 30 H 0.264 0.736 31 H 0.145 0.855 32 H 0.186 0.814 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.173 0.827 37 H 0.268 0.732 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.331 -6.292 2.941 15.925 hybrid contribution 1.242 1.497 0.327 1.972 sum -13.089 -4.795 3.268 14.318 Atomic orbital electron populations 1.69758 1.08684 1.30718 1.34812 1.26753 0.95760 1.04310 0.91000 0.85067 0.79151 0.75920 0.79042 1.18582 1.18986 1.18669 1.19875 0.96073 0.91050 1.44544 0.90240 1.18026 0.91348 0.93199 0.87106 1.22107 1.04881 0.94418 1.10770 1.22166 0.90392 0.97352 0.94322 1.67299 1.15658 1.28584 1.17854 1.18450 0.87791 0.90207 0.92799 1.43432 1.22064 1.10556 1.53727 1.22159 0.89125 0.83181 0.79331 1.90751 1.64072 1.33939 1.50457 1.21526 0.92658 0.82101 1.04505 1.46742 1.55646 1.13009 1.17613 1.22085 0.96397 0.90274 0.92457 1.22385 1.07577 0.97623 0.91756 1.21529 0.72838 0.85456 0.88205 1.90769 1.46501 1.18070 1.85902 1.44219 1.65892 1.08692 1.15104 1.15726 0.78158 0.81346 0.83306 1.90977 1.47179 1.65980 1.43095 1.21667 1.01320 0.96039 1.09061 0.89709 0.86916 0.83523 0.73641 0.85500 0.81375 0.86568 0.86317 0.87431 0.82701 0.73238 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.27 10.70 21.84 0.23 -38.04 16 2 C 0.04 1.78 5.31 85.29 0.45 2.23 16 3 Si 0.99 35.31 29.57 68.60 2.03 37.34 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 6 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 7 C -0.48 -24.76 9.14 23.52 0.21 -24.55 16 8 H 0.08 3.94 7.87 -2.92 -0.02 3.92 16 9 C 0.11 5.85 5.60 -21.12 -0.12 5.73 16 10 C -0.30 -14.60 9.90 22.84 0.23 -14.38 16 11 C 0.11 5.27 11.15 84.50 0.94 6.21 16 12 N -0.57 -28.34 7.89 -193.53 -1.53 -29.87 16 13 C 0.33 15.54 7.40 132.76 0.98 16.52 16 14 N -0.65 -22.77 5.39 -308.66 -1.66 -24.43 16 15 C 0.48 15.40 7.85 87.66 0.69 16.09 16 16 O -0.52 -21.58 14.72 -3.03 -0.04 -21.62 16 17 C 0.12 2.27 5.84 85.64 0.50 2.77 16 18 N -0.60 -11.72 2.28 -844.99 -1.93 -13.65 16 19 C 0.11 1.25 6.60 86.51 0.57 1.82 16 20 C -0.15 -2.20 6.30 30.00 0.19 -2.01 16 21 C 0.53 11.09 7.76 87.73 0.68 11.77 16 22 O -0.54 -14.35 17.93 -2.89 -0.05 -14.40 16 23 N -0.67 -14.80 5.18 -441.65 -2.29 -17.08 16 24 C 0.71 18.26 8.22 179.34 1.47 19.73 16 25 O -0.59 -19.75 16.57 -3.83 -0.06 -19.81 16 26 C -0.26 -12.71 8.61 22.98 0.20 -12.51 16 27 H 0.29 12.15 8.29 -92.71 -0.77 11.39 16 28 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 29 H 0.15 5.98 8.06 -2.91 -0.02 5.96 16 30 H 0.43 11.57 8.70 -92.71 -0.81 10.77 16 31 H 0.13 2.37 7.27 -2.39 -0.02 2.36 16 32 H 0.17 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.12 1.11 8.01 -2.39 -0.02 1.09 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.43 8.65 8.86 -92.71 -0.82 7.82 16 38 H 0.13 6.41 6.11 -2.91 -0.02 6.39 16 Total: -1.00 -78.67 334.92 1.22 -77.45 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.48 Total: 34.68 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 7.00 Total: 29.44 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -7.17 Total: -123.07 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.16 Total: -55.83 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -78.67 1.22 -77.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649722457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.624 kcal (2) G-P(sol) polarization free energy of solvation -78.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds