Wall clock time and date at job start Tue Mar 31 2020 12:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46826 * 2 1 4 4 N 1.46500 * 109.46856 * 119.99690 * 2 1 3 5 5 C 1.34776 * 120.00015 * 274.99953 * 4 2 1 6 6 N 1.34773 * 119.99646 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00107 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.47294 * 239.99871 * 2 1 3 9 9 N 1.30059 * 126.17926 * 284.69245 * 8 2 1 10 10 O 1.21273 * 110.50871 * 179.83750 * 9 8 2 11 11 C 1.34249 * 109.68894 * 0.42731 * 10 9 8 12 12 C 1.47578 * 126.68931 * 179.70263 * 11 10 9 13 13 C 1.39614 * 120.19149 * 180.02562 * 12 11 10 14 14 C 1.37874 * 119.91484 * 179.97438 * 13 12 11 15 15 C 1.38535 * 120.31815 * 0.02562 * 14 13 12 16 16 C 1.38066 * 120.39256 * 0.02562 * 15 14 13 17 17 C 1.38787 * 120.07072 * 359.69899 * 16 15 14 18 18 O 1.35572 * 120.16094 * 180.30086 * 17 16 15 19 19 C 1.34815 * 116.99413 * 354.39933 * 18 17 16 20 20 H 1.07993 * 120.00187 * 5.06359 * 19 18 17 21 21 C 1.38675 * 119.99476 * 185.06672 * 19 18 17 22 22 N 1.31535 * 120.00419 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99823 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47043 * 59.99424 * 23 21 19 25 25 H 1.48503 * 109.47170 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46727 * 299.99563 * 23 21 19 27 27 N 1.32224 * 106.62016 * 359.73327 * 11 10 9 28 28 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47529 * 300.00429 * 1 2 3 30 30 H 1.09004 * 109.46812 * 60.00023 * 1 2 3 31 31 H 0.97006 * 119.99571 * 95.00309 * 4 2 1 32 32 H 0.97006 * 120.00513 * 359.97438 * 6 5 4 33 33 H 0.96998 * 119.99985 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.04255 * 359.97438 * 13 12 11 35 35 H 1.08003 * 119.83808 * 180.02562 * 14 13 12 36 36 H 1.07997 * 119.80425 * 179.97438 * 15 14 13 37 37 H 1.07997 * 119.96301 * 179.97438 * 16 15 14 38 38 H 0.96998 * 119.99983 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3572 6 7 2.5967 -0.6534 3.4574 7 8 1.8574 1.1614 2.4118 8 6 2.0324 -0.7104 -1.2304 9 7 2.0373 -1.9962 -1.4264 10 8 2.5019 -2.2582 -2.5155 11 6 2.8599 -1.1245 -3.1392 12 6 3.4692 -1.0095 -4.4783 13 6 3.7896 0.2459 -4.9984 14 6 4.3592 0.3468 -6.2500 15 6 4.6153 -0.7924 -6.9956 16 6 4.3027 -2.0403 -6.4943 17 6 3.7341 -2.1609 -5.2340 18 8 3.4320 -3.3858 -4.7375 19 6 3.6004 -4.4389 -5.5621 20 1 4.0378 -4.2953 -6.5390 21 6 3.2119 -5.7066 -5.1558 22 7 2.6796 -5.8816 -3.9658 23 14 3.4459 -7.1661 -6.2981 24 1 4.8880 -7.3180 -6.6180 25 1 2.9543 -8.3993 -5.6326 26 1 2.6818 -6.9411 -7.5514 27 7 2.5607 -0.1312 -2.3194 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6318 1.1526 32 1 2.8273 -1.5946 3.4140 33 1 2.6896 -0.1694 4.2929 34 1 3.5916 1.1369 -4.4212 35 1 4.6070 1.3185 -6.6509 36 1 5.0613 -0.7037 -7.9752 37 1 4.5049 -2.9237 -7.0817 38 1 2.4082 -6.7684 -3.6815 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649812977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:00 Heat of formation + Delta-G solvation = 38.104343 kcal Electronic energy + Delta-G solvation = -25931.401971 eV Core-core repulsion = 21971.335230 eV Total energy + Delta-G solvation = -3960.066741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.81088 -39.98188 -39.30196 -36.73086 -36.37313 -34.49312 -33.80951 -32.66699 -32.24394 -30.13691 -29.70444 -28.98912 -25.66899 -24.80763 -23.99202 -22.35598 -21.62170 -21.27969 -20.15063 -18.64593 -18.24434 -17.88140 -17.32562 -17.11524 -16.32566 -15.66938 -15.28985 -14.92042 -14.79572 -14.62168 -14.47355 -13.98454 -13.88006 -13.75739 -13.33189 -13.05660 -12.84725 -12.16124 -12.00944 -11.88923 -11.74999 -11.38996 -11.18657 -11.13858 -10.97519 -10.92559 -10.61324 -10.48159 -10.40263 -9.92389 -9.84354 -9.68629 -9.22247 -9.05511 -8.22465 -7.47815 -6.67334 -4.26145 1.13656 2.13214 2.13981 2.67652 2.99928 3.01051 3.02959 3.05785 3.10716 3.47358 3.76659 3.88407 4.31064 4.34460 4.60176 4.82616 4.94365 5.11292 5.16590 5.44818 5.51384 5.56401 5.71094 5.80635 5.87182 6.03908 6.12334 6.20208 6.32595 6.40924 6.49694 6.50952 6.58664 6.76766 6.80847 6.95291 7.06053 7.13117 7.48601 7.72184 7.81654 8.48886 8.73781 8.76816 9.35091 10.46565 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003744 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.253347 B = 7476.100321 C = 9146.719325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.263 3.737 3 H 0.116 0.884 4 N -0.737 5.737 5 C 0.711 3.289 6 N -0.867 5.867 7 O -0.595 6.595 8 C 0.145 3.855 9 N -0.390 5.390 10 O 0.118 5.882 11 C 0.265 3.735 12 C -0.135 4.135 13 C -0.010 4.010 14 C -0.222 4.222 15 C -0.044 4.044 16 C -0.231 4.231 17 C 0.177 3.823 18 O -0.146 6.146 19 C -0.398 4.398 20 H 0.099 0.901 21 C 0.046 3.954 22 N -0.836 5.836 23 Si 0.944 3.056 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.267 1.267 27 N -0.502 5.502 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.403 0.597 32 H 0.398 0.602 33 H 0.414 0.586 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 6.049 4.473 7.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.156 3.844 3 H 0.134 0.866 4 N -0.394 5.394 5 C 0.409 3.591 6 N -0.435 5.435 7 O -0.473 6.473 8 C -0.129 4.129 9 N -0.097 5.097 10 O 0.057 5.943 11 C 0.052 3.948 12 C -0.140 4.140 13 C -0.030 4.030 14 C -0.241 4.241 15 C -0.063 4.063 16 C -0.250 4.250 17 C 0.117 3.883 18 O -0.044 6.044 19 C -0.473 4.473 20 H 0.116 0.884 21 C -0.162 4.162 22 N -0.467 5.467 23 Si 0.767 3.233 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 N -0.238 5.238 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.238 0.762 32 H 0.226 0.774 33 H 0.246 0.754 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.186 6.576 5.504 8.577 hybrid contribution 0.510 -1.622 -0.484 1.768 sum 0.325 4.953 5.020 7.060 Atomic orbital electron populations 1.22176 0.93161 1.03089 1.03281 1.18691 0.94039 0.95481 0.76164 0.86644 1.45118 1.71485 1.14186 1.08587 1.15840 0.77913 0.84838 0.80514 1.42950 1.73533 1.15018 1.12000 1.90964 1.57431 1.14225 1.84675 1.25450 1.01695 0.88131 0.97647 1.74516 1.17835 1.16954 1.00427 1.85672 1.55508 1.33203 1.19928 1.26130 0.93533 0.79691 0.95413 1.16278 1.15310 0.92899 0.89474 1.20737 0.93124 0.94548 0.94579 1.20555 1.09349 0.98158 0.96081 1.21007 0.94947 0.92140 0.98246 1.21099 1.08298 0.98537 0.97110 1.19278 0.91856 0.85779 0.91345 1.83964 1.70595 1.10772 1.39111 1.21438 1.42981 0.84046 0.98833 0.88399 1.25398 0.95542 0.98206 0.97061 1.70052 1.34987 1.24183 1.17460 0.85736 0.79265 0.79037 0.79228 1.19220 1.20062 1.19195 1.72013 1.20153 1.29402 1.02222 0.91796 0.90757 0.90908 0.76199 0.77400 0.75353 0.85367 0.86494 0.86655 0.84602 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.47 37.16 0.35 -1.79 16 2 C 0.26 4.03 3.12 -69.08 -0.22 3.81 16 3 H 0.12 1.84 7.58 -51.93 -0.39 1.44 16 4 N -0.74 -9.95 5.07 -59.82 -0.30 -10.25 16 5 C 0.71 9.50 8.80 -86.92 -0.77 8.74 16 6 N -0.87 -7.53 8.88 27.63 0.25 -7.28 16 7 O -0.59 -10.13 16.84 5.29 0.09 -10.04 16 8 C 0.14 2.68 7.00 -156.56 -1.10 1.59 16 9 N -0.39 -8.08 11.84 31.21 0.37 -7.71 16 10 O 0.12 2.75 10.01 -1.94 -0.02 2.73 16 11 C 0.26 5.70 7.96 -13.90 -0.11 5.59 16 12 C -0.13 -2.79 5.89 -104.82 -0.62 -3.40 16 13 C -0.01 -0.17 9.70 -39.20 -0.38 -0.55 16 14 C -0.22 -3.42 10.03 -39.61 -0.40 -3.82 16 15 C -0.04 -0.70 10.03 -39.54 -0.40 -1.10 16 16 C -0.23 -4.43 9.16 -39.44 -0.36 -4.79 16 17 C 0.18 3.93 6.66 -38.62 -0.26 3.67 16 18 O -0.15 -3.79 8.21 -17.82 -0.15 -3.94 16 19 C -0.40 -10.08 9.49 30.89 0.29 -9.79 16 20 H 0.10 2.23 5.21 -52.49 -0.27 1.96 16 21 C 0.05 1.16 5.49 -17.52 -0.10 1.07 16 22 N -0.84 -22.75 13.67 55.48 0.76 -21.99 16 23 Si 0.94 18.80 29.55 -169.99 -5.02 13.77 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 27 N -0.50 -9.94 11.26 -10.18 -0.11 -10.05 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.40 5.11 8.36 -40.82 -0.34 4.77 16 32 H 0.40 2.47 8.84 -40.82 -0.36 2.11 16 33 H 0.41 2.95 8.93 -40.82 -0.36 2.59 16 34 H 0.13 2.02 7.88 -52.49 -0.41 1.61 16 35 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.14 2.52 5.64 -52.49 -0.30 2.23 16 38 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -31.33 340.72 -6.75 -38.08 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -3.69 Total: 12.31 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -4.05 Total: -0.77 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.96 Total: -57.29 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.08 Total: -11.24 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.33 -6.75 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649812977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.184 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds