Wall clock time and date at job start Tue Mar 31 2020 12:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46826 * 2 1 4 4 N 1.46500 * 109.46856 * 119.99690 * 2 1 3 5 5 C 1.34776 * 120.00015 * 274.99953 * 4 2 1 6 6 N 1.34773 * 119.99646 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00107 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.47294 * 239.99871 * 2 1 3 9 9 N 1.30059 * 126.17926 * 284.69245 * 8 2 1 10 10 O 1.21273 * 110.50871 * 179.83750 * 9 8 2 11 11 C 1.34249 * 109.68894 * 0.42731 * 10 9 8 12 12 C 1.47578 * 126.68931 * 179.70263 * 11 10 9 13 13 C 1.39614 * 120.19149 * 180.02562 * 12 11 10 14 14 C 1.37874 * 119.91484 * 179.97438 * 13 12 11 15 15 C 1.38535 * 120.31815 * 0.02562 * 14 13 12 16 16 C 1.38066 * 120.39256 * 0.02562 * 15 14 13 17 17 C 1.38787 * 120.07072 * 359.69899 * 16 15 14 18 18 O 1.35572 * 120.16094 * 180.30086 * 17 16 15 19 19 C 1.34815 * 116.99413 * 354.39933 * 18 17 16 20 20 H 1.07993 * 120.00187 * 5.06359 * 19 18 17 21 21 C 1.38675 * 119.99476 * 185.06672 * 19 18 17 22 22 N 1.31535 * 120.00419 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99823 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47043 * 59.99424 * 23 21 19 25 25 H 1.48503 * 109.47170 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46727 * 299.99563 * 23 21 19 27 27 N 1.32224 * 106.62016 * 359.73327 * 11 10 9 28 28 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47529 * 300.00429 * 1 2 3 30 30 H 1.09004 * 109.46812 * 60.00023 * 1 2 3 31 31 H 0.97006 * 119.99571 * 95.00309 * 4 2 1 32 32 H 0.97006 * 120.00513 * 359.97438 * 6 5 4 33 33 H 0.96998 * 119.99985 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.04255 * 359.97438 * 13 12 11 35 35 H 1.08003 * 119.83808 * 180.02562 * 14 13 12 36 36 H 1.07997 * 119.80425 * 179.97438 * 15 14 13 37 37 H 1.07997 * 119.96301 * 179.97438 * 16 15 14 38 38 H 0.96998 * 119.99983 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3572 6 7 2.5967 -0.6534 3.4574 7 8 1.8574 1.1614 2.4118 8 6 2.0324 -0.7104 -1.2304 9 7 2.0373 -1.9962 -1.4264 10 8 2.5019 -2.2582 -2.5155 11 6 2.8599 -1.1245 -3.1392 12 6 3.4692 -1.0095 -4.4783 13 6 3.7896 0.2459 -4.9984 14 6 4.3592 0.3468 -6.2500 15 6 4.6153 -0.7924 -6.9956 16 6 4.3027 -2.0403 -6.4943 17 6 3.7341 -2.1609 -5.2340 18 8 3.4320 -3.3858 -4.7375 19 6 3.6004 -4.4389 -5.5621 20 1 4.0378 -4.2953 -6.5390 21 6 3.2119 -5.7066 -5.1558 22 7 2.6796 -5.8816 -3.9658 23 14 3.4459 -7.1661 -6.2981 24 1 4.8880 -7.3180 -6.6180 25 1 2.9543 -8.3993 -5.6326 26 1 2.6818 -6.9411 -7.5514 27 7 2.5607 -0.1312 -2.3194 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6318 1.1526 32 1 2.8273 -1.5946 3.4140 33 1 2.6896 -0.1694 4.2929 34 1 3.5916 1.1369 -4.4212 35 1 4.6070 1.3185 -6.6509 36 1 5.0613 -0.7037 -7.9752 37 1 4.5049 -2.9237 -7.0817 38 1 2.4082 -6.7684 -3.6815 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649812977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:59 Heat of formation + Delta-G solvation = 13.041972 kcal Electronic energy + Delta-G solvation = -25932.488757 eV Core-core repulsion = 21971.335230 eV Total energy + Delta-G solvation = -3961.153527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.41656 -41.09014 -40.88900 -38.30676 -37.72728 -35.93651 -34.82564 -34.39288 -33.75552 -31.40659 -31.08862 -30.51952 -27.44445 -26.15574 -25.53622 -23.76248 -23.16332 -22.52721 -21.47821 -19.92830 -19.82054 -19.19944 -18.94587 -18.33381 -17.85372 -17.05449 -16.49279 -16.38995 -16.18930 -15.93667 -15.78062 -15.67954 -15.30737 -14.96122 -14.76088 -14.47220 -14.31318 -13.60377 -13.49838 -13.33193 -13.28075 -12.70846 -12.65135 -12.62162 -12.47090 -12.35819 -12.14655 -12.05764 -11.62588 -11.45263 -11.33276 -10.81945 -10.81578 -10.30209 -9.69778 -9.06861 -8.47688 -6.16358 -0.43556 0.62903 0.66934 1.28455 1.38609 1.49156 1.54149 1.73345 1.86859 2.02027 2.15562 2.47270 2.80763 3.00055 3.12572 3.29732 3.48757 3.75221 3.96395 4.10041 4.17380 4.27895 4.43784 4.54438 4.59131 4.66754 4.71915 4.83725 4.92001 5.05097 5.07552 5.15098 5.19277 5.50711 5.56237 5.67359 5.69796 5.94165 5.95947 6.08918 6.86434 6.93520 7.12109 7.50927 7.65073 8.71222 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003744 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.253347 B = 7476.100321 C = 9146.719325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.266 3.734 3 H 0.113 0.887 4 N -0.735 5.735 5 C 0.709 3.291 6 N -0.844 5.844 7 O -0.631 6.631 8 C 0.162 3.838 9 N -0.403 5.403 10 O 0.074 5.926 11 C 0.256 3.744 12 C -0.151 4.151 13 C -0.014 4.014 14 C -0.193 4.193 15 C -0.028 4.028 16 C -0.245 4.245 17 C 0.151 3.849 18 O -0.197 6.197 19 C -0.419 4.419 20 H 0.114 0.886 21 C -0.012 4.012 22 N -0.899 5.899 23 Si 1.016 2.984 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.255 1.255 27 N -0.500 5.500 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.408 0.592 32 H 0.413 0.587 33 H 0.425 0.575 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 8.150 2.979 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.158 3.842 3 H 0.131 0.869 4 N -0.392 5.392 5 C 0.407 3.593 6 N -0.413 5.413 7 O -0.513 6.513 8 C -0.113 4.113 9 N -0.116 5.116 10 O 0.020 5.980 11 C 0.043 3.957 12 C -0.156 4.156 13 C -0.034 4.034 14 C -0.212 4.212 15 C -0.047 4.047 16 C -0.264 4.264 17 C 0.095 3.905 18 O -0.100 6.100 19 C -0.495 4.495 20 H 0.131 0.869 21 C -0.213 4.213 22 N -0.534 5.534 23 Si 0.835 3.165 24 H -0.179 1.179 25 H -0.202 1.202 26 H -0.180 1.180 27 N -0.237 5.237 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.243 0.757 32 H 0.243 0.757 33 H 0.259 0.741 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.180 0.820 37 H 0.154 0.846 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.925 8.683 3.980 9.596 hybrid contribution 0.263 -1.836 -0.038 1.855 sum 1.188 6.847 3.943 7.990 Atomic orbital electron populations 1.22119 0.91636 1.03084 1.04030 1.18775 0.95082 0.94854 0.75502 0.86885 1.45016 1.71609 1.14284 1.08273 1.15962 0.77868 0.84406 0.81052 1.42746 1.71762 1.15733 1.11054 1.90940 1.59178 1.15866 1.85282 1.26052 0.99605 0.87630 0.98018 1.74520 1.19030 1.18031 1.00063 1.85667 1.56761 1.34509 1.21027 1.26565 0.93478 0.79585 0.96084 1.16777 1.15598 0.93982 0.89239 1.21091 0.92969 0.93573 0.95751 1.21173 1.05463 1.00141 0.94378 1.21539 0.92775 0.90529 0.99829 1.21314 1.08546 1.00442 0.96079 1.19861 0.92260 0.85408 0.92980 1.83970 1.73673 1.11943 1.40403 1.21945 1.43390 0.84556 0.99593 0.86896 1.26590 0.95088 1.01051 0.98564 1.70217 1.38571 1.24560 1.20093 0.84679 0.79775 0.74886 0.77138 1.17881 1.20190 1.17965 1.72031 1.20346 1.28894 1.02387 0.92143 0.89674 0.90446 0.75696 0.75673 0.74085 0.83609 0.81724 0.81998 0.84586 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.47 71.98 0.68 -3.28 16 2 C 0.27 8.05 3.12 44.25 0.14 8.19 16 3 H 0.11 3.53 7.58 -2.39 -0.02 3.52 16 4 N -0.73 -19.51 5.07 -461.42 -2.34 -21.85 16 5 C 0.71 18.26 8.80 179.06 1.58 19.84 16 6 N -0.84 -13.33 8.88 -184.76 -1.64 -14.97 16 7 O -0.63 -20.99 16.84 -3.98 -0.07 -21.06 16 8 C 0.16 6.09 7.00 138.53 0.97 7.05 16 9 N -0.40 -17.47 11.84 -58.48 -0.69 -18.17 16 10 O 0.07 3.69 10.01 86.85 0.87 4.56 16 11 C 0.26 11.35 7.96 87.21 0.69 12.05 16 12 C -0.15 -6.28 5.89 -19.99 -0.12 -6.40 16 13 C -0.01 -0.46 9.70 22.52 0.22 -0.24 16 14 C -0.19 -4.95 10.03 22.25 0.22 -4.73 16 15 C -0.03 -0.77 10.03 22.30 0.22 -0.54 16 16 C -0.24 -9.07 9.16 22.36 0.20 -8.87 16 17 C 0.15 6.87 6.66 22.89 0.15 7.02 16 18 O -0.20 -10.91 8.21 -2.98 -0.02 -10.94 16 19 C -0.42 -22.32 9.49 67.92 0.64 -21.67 16 20 H 0.11 5.31 5.21 -2.91 -0.02 5.29 16 21 C -0.01 -0.65 5.49 84.84 0.47 -0.19 16 22 N -0.90 -52.45 13.67 21.62 0.30 -52.16 16 23 Si 1.02 39.76 29.55 68.60 2.03 41.78 16 24 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 25 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 27 N -0.50 -19.95 11.26 -302.64 -3.41 -23.36 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.41 10.26 8.36 -92.70 -0.78 9.49 16 32 H 0.41 4.42 8.84 -92.70 -0.82 3.60 16 33 H 0.43 5.28 8.93 -92.71 -0.83 4.45 16 34 H 0.15 4.14 7.88 -2.91 -0.02 4.12 16 35 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.14 4.96 5.64 -2.91 -0.02 4.95 16 38 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -74.14 340.72 -0.16 -74.29 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -1.25 Total: 33.65 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.07 Total: 8.23 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -7.79 Total: -130.51 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: 0.78 Total: -27.44 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Total: -74.14 -0.16 -74.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649812977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.335 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds