Wall clock time and date at job start Tue Mar 31 2020 12:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 N 1.46497 * 109.47039 * 239.99756 * 2 1 3 5 5 C 1.34783 * 119.99736 * 85.00103 * 4 2 1 6 6 N 1.34775 * 119.99469 * 179.97438 * 5 4 2 7 7 O 1.21581 * 119.99941 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47122 * 119.99738 * 2 1 3 9 9 N 1.30045 * 126.17854 * 75.02434 * 8 2 1 10 10 O 1.21286 * 110.51063 * 180.02562 * 9 8 2 11 11 C 1.34243 * 109.68388 * 0.02562 * 10 9 8 12 12 C 1.47578 * 126.68697 * 179.97438 * 11 10 9 13 13 C 1.39613 * 120.19113 * 179.97438 * 12 11 10 14 14 C 1.37880 * 119.91686 * 180.02562 * 13 12 11 15 15 C 1.38538 * 120.31434 * 0.02562 * 14 13 12 16 16 C 1.38064 * 120.39350 * 359.97438 * 15 14 13 17 17 C 1.38793 * 120.06855 * 359.71192 * 16 15 14 18 18 O 1.35572 * 120.15439 * 180.29912 * 17 16 15 19 19 C 1.34806 * 116.99909 * 354.39979 * 18 17 16 20 20 H 1.07997 * 120.00732 * 5.06942 * 19 18 17 21 21 C 1.38682 * 119.99790 * 185.06646 * 19 18 17 22 22 N 1.31528 * 120.00253 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99988 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46893 * 59.99783 * 23 21 19 25 25 H 1.48500 * 109.46959 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46862 * 299.99954 * 23 21 19 27 27 N 1.32225 * 106.62350 * 359.73588 * 11 10 9 28 28 H 1.09000 * 109.46837 * 299.99950 * 1 2 3 29 29 H 1.09000 * 109.47149 * 60.00092 * 1 2 3 30 30 H 1.09000 * 109.47092 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00281 * 264.99901 * 4 2 1 32 32 H 0.97005 * 119.99219 * 179.97438 * 6 5 4 33 33 H 0.97001 * 120.00410 * 359.72983 * 6 5 4 34 34 H 1.07995 * 120.04478 * 359.97438 * 13 12 11 35 35 H 1.08000 * 119.84087 * 180.02562 * 14 13 12 36 36 H 1.08001 * 119.80411 * 179.97438 * 15 14 13 37 37 H 1.08001 * 119.96369 * 179.97438 * 16 15 14 38 38 H 0.96999 * 120.00738 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 7 2.5968 -0.6536 -3.4574 7 8 1.8584 1.1615 -2.4116 8 6 2.0324 -0.7104 1.2305 9 7 2.0325 -1.9956 1.4286 10 8 2.5011 -2.2579 2.5161 11 6 2.8579 -1.1241 3.1402 12 6 3.4648 -1.0088 4.4804 13 6 3.7842 0.2467 5.0008 14 6 4.3515 0.3478 6.2534 15 6 4.6073 -0.7913 6.9993 16 6 4.2966 -2.0393 6.4972 17 6 3.7191 -2.1594 5.2409 18 8 3.4078 -3.3837 4.7487 19 6 3.7896 -4.4515 5.4775 20 1 4.2452 -4.3092 6.4463 21 6 3.5974 -5.7329 4.9833 22 7 3.0421 -5.9064 3.8036 23 14 4.1259 -7.2127 5.9935 24 1 3.3974 -7.2142 7.2876 25 1 3.8126 -8.4583 5.2482 26 1 5.5871 -7.1418 6.2481 27 7 2.5643 -0.1312 2.3178 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6318 -1.1526 32 1 2.6891 -0.1697 -4.2931 33 1 2.8316 -1.5937 -3.4128 34 1 3.5879 1.1375 4.4227 35 1 4.5977 1.3197 6.6550 36 1 5.0523 -0.7025 7.9793 37 1 4.4994 -2.9227 7.0844 38 1 2.9073 -6.8027 3.4580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649813062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:02 Heat of formation + Delta-G solvation = 38.083023 kcal Electronic energy + Delta-G solvation = -25934.682929 eV Core-core repulsion = 21974.615264 eV Total energy + Delta-G solvation = -3960.067665 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.81018 -39.97949 -39.30236 -36.73112 -36.37257 -34.49179 -33.80701 -32.66812 -32.24498 -30.13737 -29.70378 -28.98926 -25.66929 -24.80803 -23.99254 -22.35550 -21.62148 -21.27830 -20.14949 -18.64358 -18.24532 -17.88110 -17.32480 -17.11374 -16.32600 -15.66802 -15.28809 -14.91980 -14.79690 -14.62012 -14.47637 -13.99114 -13.87268 -13.75513 -13.33887 -13.05007 -12.84862 -12.16341 -12.01127 -11.88973 -11.74955 -11.39049 -11.18561 -11.14029 -10.97540 -10.92787 -10.61484 -10.47911 -10.40233 -9.92454 -9.84097 -9.68618 -9.22102 -9.05602 -8.22488 -7.47868 -6.67401 -4.26176 1.13659 2.13239 2.13935 2.67810 3.00096 3.01024 3.02790 3.05669 3.10853 3.47377 3.76569 3.88390 4.31248 4.34487 4.60245 4.82550 4.94317 5.11231 5.16405 5.44725 5.51293 5.56351 5.70973 5.80508 5.87137 6.03887 6.12132 6.20081 6.32764 6.40904 6.49685 6.50970 6.58879 6.76983 6.80813 6.95269 7.06028 7.13077 7.48588 7.72082 7.81893 8.49106 8.73690 8.76775 9.35112 10.46499 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.003772 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.108717 B = 7420.353820 C = 9116.672650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.263 3.737 3 H 0.116 0.884 4 N -0.737 5.737 5 C 0.711 3.289 6 N -0.867 5.867 7 O -0.595 6.595 8 C 0.145 3.855 9 N -0.390 5.390 10 O 0.118 5.882 11 C 0.265 3.735 12 C -0.135 4.135 13 C -0.010 4.010 14 C -0.222 4.222 15 C -0.044 4.044 16 C -0.231 4.231 17 C 0.177 3.823 18 O -0.146 6.146 19 C -0.398 4.398 20 H 0.099 0.901 21 C 0.046 3.954 22 N -0.836 5.836 23 Si 0.944 3.056 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.267 1.267 27 N -0.502 5.502 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.403 0.597 32 H 0.414 0.586 33 H 0.398 0.602 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 6.075 -4.323 7.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.156 3.844 3 H 0.134 0.866 4 N -0.394 5.394 5 C 0.409 3.591 6 N -0.435 5.435 7 O -0.473 6.473 8 C -0.129 4.129 9 N -0.097 5.097 10 O 0.057 5.943 11 C 0.052 3.948 12 C -0.140 4.140 13 C -0.030 4.030 14 C -0.241 4.241 15 C -0.063 4.063 16 C -0.250 4.250 17 C 0.117 3.883 18 O -0.044 6.044 19 C -0.473 4.473 20 H 0.116 0.884 21 C -0.162 4.162 22 N -0.467 5.467 23 Si 0.767 3.233 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 N -0.238 5.238 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.238 0.762 32 H 0.246 0.754 33 H 0.226 0.774 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.534 6.601 -5.349 8.513 hybrid contribution 0.642 -1.631 0.428 1.804 sum 0.109 4.970 -4.921 6.995 Atomic orbital electron populations 1.22177 0.93165 1.03081 1.03278 1.18693 0.94031 0.95488 0.76170 0.86640 1.45120 1.71487 1.14191 1.08582 1.15843 0.77919 0.84833 0.80510 1.42952 1.73437 1.15133 1.11979 1.90963 1.57475 1.14193 1.84671 1.25447 1.01615 0.88153 0.97705 1.74516 1.17721 1.16961 1.00530 1.85675 1.55439 1.33169 1.20032 1.26128 0.93550 0.79688 0.95400 1.16277 1.15819 0.93041 0.88822 1.20737 0.93115 0.94543 0.94594 1.20557 1.09318 0.98154 0.96113 1.21009 0.94977 0.92125 0.98232 1.21101 1.08477 0.98526 0.96940 1.19278 0.91396 0.85991 0.91596 1.83961 1.64356 1.10264 1.45858 1.21438 1.41849 0.82334 1.01675 0.88401 1.25398 0.96126 0.98220 0.96456 1.70047 1.36734 1.23859 1.16047 0.85738 0.79399 0.79039 0.79100 1.19205 1.20062 1.19207 1.72016 1.20188 1.29419 1.02171 0.90915 0.90754 0.91800 0.76194 0.75351 0.77394 0.85367 0.86492 0.86654 0.84600 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.47 37.16 0.35 -1.78 16 2 C 0.26 4.03 3.12 -69.08 -0.22 3.81 16 3 H 0.12 1.84 7.58 -51.93 -0.39 1.44 16 4 N -0.74 -9.98 5.07 -59.81 -0.30 -10.28 16 5 C 0.71 9.53 8.80 -86.91 -0.77 8.77 16 6 N -0.87 -7.57 8.88 27.63 0.25 -7.33 16 7 O -0.59 -10.14 16.84 5.29 0.09 -10.05 16 8 C 0.14 2.68 6.99 -156.57 -1.09 1.59 16 9 N -0.39 -8.08 11.84 31.21 0.37 -7.71 16 10 O 0.12 2.75 10.01 -1.92 -0.02 2.73 16 11 C 0.26 5.70 7.96 -13.90 -0.11 5.59 16 12 C -0.13 -2.78 5.89 -104.82 -0.62 -3.40 16 13 C -0.01 -0.18 9.70 -39.20 -0.38 -0.56 16 14 C -0.22 -3.42 10.03 -39.60 -0.40 -3.82 16 15 C -0.04 -0.70 10.03 -39.53 -0.40 -1.10 16 16 C -0.23 -4.43 9.16 -39.44 -0.36 -4.79 16 17 C 0.18 3.93 6.66 -38.62 -0.26 3.67 16 18 O -0.15 -3.79 8.21 -17.80 -0.15 -3.94 16 19 C -0.40 -10.08 9.49 30.90 0.29 -9.79 16 20 H 0.10 2.23 5.21 -52.49 -0.27 1.96 16 21 C 0.05 1.17 5.49 -17.52 -0.10 1.07 16 22 N -0.84 -22.74 13.67 55.48 0.76 -21.98 16 23 Si 0.94 18.79 29.55 -169.99 -5.02 13.76 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 27 N -0.50 -9.94 11.26 -10.18 -0.11 -10.06 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.40 5.14 8.37 -40.82 -0.34 4.79 16 32 H 0.41 2.97 8.93 -40.82 -0.36 2.60 16 33 H 0.40 2.50 8.84 -40.82 -0.36 2.14 16 34 H 0.13 2.02 7.88 -52.49 -0.41 1.61 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.14 2.52 5.64 -52.49 -0.30 2.23 16 38 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -31.32 340.74 -6.75 -38.07 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -3.69 Total: 12.37 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -4.05 Total: -0.73 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.96 Total: -57.35 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.08 Total: -11.26 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.32 -6.75 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649813062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.150 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds