Wall clock time and date at job start Tue Mar 31 2020 12:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 N 1.46497 * 109.47039 * 239.99756 * 2 1 3 5 5 C 1.34783 * 119.99736 * 85.00103 * 4 2 1 6 6 N 1.34775 * 119.99469 * 179.97438 * 5 4 2 7 7 O 1.21581 * 119.99941 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47122 * 119.99738 * 2 1 3 9 9 N 1.30045 * 126.17854 * 75.02434 * 8 2 1 10 10 O 1.21286 * 110.51063 * 180.02562 * 9 8 2 11 11 C 1.34243 * 109.68388 * 0.02562 * 10 9 8 12 12 C 1.47578 * 126.68697 * 179.97438 * 11 10 9 13 13 C 1.39613 * 120.19113 * 179.97438 * 12 11 10 14 14 C 1.37880 * 119.91686 * 180.02562 * 13 12 11 15 15 C 1.38538 * 120.31434 * 0.02562 * 14 13 12 16 16 C 1.38064 * 120.39350 * 359.97438 * 15 14 13 17 17 C 1.38793 * 120.06855 * 359.71192 * 16 15 14 18 18 O 1.35572 * 120.15439 * 180.29912 * 17 16 15 19 19 C 1.34806 * 116.99909 * 354.39979 * 18 17 16 20 20 H 1.07997 * 120.00732 * 5.06942 * 19 18 17 21 21 C 1.38682 * 119.99790 * 185.06646 * 19 18 17 22 22 N 1.31528 * 120.00253 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99988 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46893 * 59.99783 * 23 21 19 25 25 H 1.48500 * 109.46959 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46862 * 299.99954 * 23 21 19 27 27 N 1.32225 * 106.62350 * 359.73588 * 11 10 9 28 28 H 1.09000 * 109.46837 * 299.99950 * 1 2 3 29 29 H 1.09000 * 109.47149 * 60.00092 * 1 2 3 30 30 H 1.09000 * 109.47092 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00281 * 264.99901 * 4 2 1 32 32 H 0.97005 * 119.99219 * 179.97438 * 6 5 4 33 33 H 0.97001 * 120.00410 * 359.72983 * 6 5 4 34 34 H 1.07995 * 120.04478 * 359.97438 * 13 12 11 35 35 H 1.08000 * 119.84087 * 180.02562 * 14 13 12 36 36 H 1.08001 * 119.80411 * 179.97438 * 15 14 13 37 37 H 1.08001 * 119.96369 * 179.97438 * 16 15 14 38 38 H 0.96999 * 120.00738 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 7 2.5968 -0.6536 -3.4574 7 8 1.8584 1.1615 -2.4116 8 6 2.0324 -0.7104 1.2305 9 7 2.0325 -1.9956 1.4286 10 8 2.5011 -2.2579 2.5161 11 6 2.8579 -1.1241 3.1402 12 6 3.4648 -1.0088 4.4804 13 6 3.7842 0.2467 5.0008 14 6 4.3515 0.3478 6.2534 15 6 4.6073 -0.7913 6.9993 16 6 4.2966 -2.0393 6.4972 17 6 3.7191 -2.1594 5.2409 18 8 3.4078 -3.3837 4.7487 19 6 3.7896 -4.4515 5.4775 20 1 4.2452 -4.3092 6.4463 21 6 3.5974 -5.7329 4.9833 22 7 3.0421 -5.9064 3.8036 23 14 4.1259 -7.2127 5.9935 24 1 3.3974 -7.2142 7.2876 25 1 3.8126 -8.4583 5.2482 26 1 5.5871 -7.1418 6.2481 27 7 2.5643 -0.1312 2.3178 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6318 -1.1526 32 1 2.6891 -0.1697 -4.2931 33 1 2.8316 -1.5937 -3.4128 34 1 3.5879 1.1375 4.4227 35 1 4.5977 1.3197 6.6550 36 1 5.0523 -0.7025 7.9793 37 1 4.4994 -2.9227 7.0844 38 1 2.9073 -6.8027 3.4580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649813062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:01 Heat of formation + Delta-G solvation = 13.033559 kcal Electronic energy + Delta-G solvation = -25935.769156 eV Core-core repulsion = 21974.615264 eV Total energy + Delta-G solvation = -3961.153891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.41573 -41.09018 -40.88932 -38.30687 -37.72708 -35.93569 -34.82597 -34.39367 -33.75663 -31.40738 -31.08711 -30.51920 -27.44424 -26.15474 -25.53670 -23.76232 -23.16318 -22.52701 -21.47766 -19.92887 -19.82023 -19.20133 -18.94392 -18.33421 -17.85422 -17.05461 -16.49183 -16.39045 -16.18550 -15.94318 -15.77905 -15.68315 -15.30426 -14.96117 -14.76406 -14.46770 -14.31228 -13.60447 -13.49872 -13.33023 -13.28070 -12.70613 -12.65077 -12.62039 -12.47515 -12.35877 -12.14704 -12.05599 -11.62675 -11.45301 -11.33258 -10.82048 -10.81569 -10.30238 -9.69793 -9.06887 -8.47677 -6.16320 -0.43546 0.62902 0.66934 1.28455 1.38599 1.49121 1.54125 1.73480 1.86845 2.01988 2.15552 2.47221 2.80730 3.00119 3.12576 3.29684 3.48677 3.75225 3.96417 4.10052 4.17429 4.27920 4.43843 4.54439 4.59175 4.66846 4.71950 4.83706 4.92002 5.05195 5.07549 5.15092 5.19346 5.50706 5.56224 5.67355 5.69687 5.94149 5.95838 6.08916 6.86302 6.93487 7.12083 7.50830 7.65128 8.71239 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.003772 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.108717 B = 7420.353820 C = 9116.672650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.265 3.735 3 H 0.113 0.887 4 N -0.735 5.735 5 C 0.709 3.291 6 N -0.844 5.844 7 O -0.631 6.631 8 C 0.162 3.838 9 N -0.403 5.403 10 O 0.074 5.926 11 C 0.256 3.744 12 C -0.151 4.151 13 C -0.014 4.014 14 C -0.193 4.193 15 C -0.028 4.028 16 C -0.245 4.245 17 C 0.151 3.849 18 O -0.197 6.197 19 C -0.420 4.420 20 H 0.114 0.886 21 C -0.012 4.012 22 N -0.899 5.899 23 Si 1.016 2.984 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.255 1.255 27 N -0.500 5.500 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.407 0.593 32 H 0.425 0.575 33 H 0.413 0.587 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 8.167 -2.863 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.158 3.842 3 H 0.131 0.869 4 N -0.392 5.392 5 C 0.407 3.593 6 N -0.413 5.413 7 O -0.513 6.513 8 C -0.113 4.113 9 N -0.116 5.116 10 O 0.020 5.980 11 C 0.043 3.957 12 C -0.156 4.156 13 C -0.034 4.034 14 C -0.212 4.212 15 C -0.047 4.047 16 C -0.264 4.264 17 C 0.095 3.905 18 O -0.100 6.100 19 C -0.495 4.495 20 H 0.131 0.869 21 C -0.213 4.213 22 N -0.534 5.534 23 Si 0.835 3.165 24 H -0.179 1.179 25 H -0.202 1.202 26 H -0.179 1.179 27 N -0.237 5.237 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.243 0.757 32 H 0.259 0.741 33 H 0.243 0.757 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.180 0.820 37 H 0.154 0.846 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.645 8.700 -3.857 9.538 hybrid contribution 0.350 -1.840 0.003 1.873 sum 0.994 6.859 -3.855 7.931 Atomic orbital electron populations 1.22119 0.91597 1.03099 1.04036 1.18780 0.95109 0.94846 0.75493 0.86898 1.45020 1.71613 1.14283 1.08280 1.15965 0.77876 0.84403 0.81047 1.42749 1.71677 1.15837 1.11039 1.90939 1.59217 1.15827 1.85277 1.26050 0.99529 0.87651 0.98070 1.74520 1.18913 1.18036 1.00171 1.85670 1.56691 1.34474 1.21132 1.26563 0.93492 0.79582 0.96073 1.16775 1.16072 0.94119 0.88630 1.21092 0.92943 0.93572 0.95779 1.21175 1.05435 1.00137 0.94409 1.21540 0.92796 0.90518 0.99821 1.21316 1.08708 1.00432 0.95925 1.19861 0.92014 0.85576 0.93059 1.83968 1.67255 1.11389 1.47374 1.21946 1.42276 0.82859 1.02413 0.86902 1.26591 0.96023 1.01152 0.97524 1.70212 1.40409 1.24158 1.18656 0.84680 0.79481 0.74756 0.77564 1.17926 1.20178 1.17928 1.72035 1.20385 1.28913 1.02334 0.90418 0.89686 0.92119 0.75709 0.74082 0.75678 0.83610 0.81724 0.81998 0.84586 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.47 71.98 0.68 -3.26 16 2 C 0.27 8.04 3.12 44.25 0.14 8.18 16 3 H 0.11 3.53 7.58 -2.39 -0.02 3.51 16 4 N -0.73 -19.58 5.07 -461.40 -2.34 -21.92 16 5 C 0.71 18.33 8.80 179.05 1.58 19.90 16 6 N -0.84 -13.43 8.88 -184.75 -1.64 -15.07 16 7 O -0.63 -21.03 16.84 -3.97 -0.07 -21.09 16 8 C 0.16 6.09 6.99 138.53 0.97 7.06 16 9 N -0.40 -17.47 11.84 -58.48 -0.69 -18.16 16 10 O 0.07 3.68 10.01 86.89 0.87 4.55 16 11 C 0.26 11.35 7.96 87.21 0.69 12.05 16 12 C -0.15 -6.28 5.89 -19.99 -0.12 -6.40 16 13 C -0.01 -0.46 9.70 22.52 0.22 -0.24 16 14 C -0.19 -4.95 10.03 22.26 0.22 -4.73 16 15 C -0.03 -0.77 10.03 22.30 0.22 -0.54 16 16 C -0.24 -9.07 9.16 22.36 0.20 -8.87 16 17 C 0.15 6.86 6.66 22.89 0.15 7.02 16 18 O -0.20 -10.91 8.21 -2.89 -0.02 -10.94 16 19 C -0.42 -22.32 9.49 67.93 0.64 -21.68 16 20 H 0.11 5.31 5.21 -2.91 -0.02 5.29 16 21 C -0.01 -0.65 5.49 84.84 0.47 -0.18 16 22 N -0.90 -52.41 13.67 21.62 0.30 -52.11 16 23 Si 1.02 39.73 29.55 68.60 2.03 41.75 16 24 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 25 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 27 N -0.50 -19.96 11.26 -302.66 -3.41 -23.37 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.41 10.32 8.37 -92.71 -0.78 9.54 16 32 H 0.43 5.32 8.93 -92.70 -0.83 4.49 16 33 H 0.41 4.49 8.84 -92.71 -0.82 3.67 16 34 H 0.15 4.14 7.88 -2.91 -0.02 4.12 16 35 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.14 4.97 5.64 -2.91 -0.02 4.95 16 38 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -74.10 340.74 -0.16 -74.26 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -1.25 Total: 33.79 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.07 Total: 8.31 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -7.79 Total: -130.63 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: 0.78 Total: -27.48 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -74.10 -0.16 -74.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649813062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.289 kcal (2) G-P(sol) polarization free energy of solvation -74.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds