Wall clock time and date at job start Tue Mar 31 2020 12:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48495 * 109.47061 * 92.77181 * 3 2 1 5 5 H 1.48497 * 109.47041 * 212.77765 * 3 2 1 6 6 H 1.48501 * 109.46958 * 332.77644 * 3 2 1 7 7 C 1.40031 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00419 * 19.06665 * 7 2 1 9 9 C 1.41548 * 119.99825 * 199.06044 * 7 2 1 10 10 C 1.41170 * 120.99384 * 32.21379 * 9 7 2 11 11 C 1.36587 * 119.12610 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.25713 * 0.02562 * 11 10 9 13 13 C 1.32481 * 122.23090 * 359.97438 * 12 11 10 14 14 N 1.39468 * 119.64983 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99694 * 354.17937 * 14 13 12 16 16 O 1.21579 * 120.00199 * 5.06237 * 15 14 13 17 17 N 1.34780 * 120.00047 * 185.06351 * 15 14 13 18 18 C 1.46492 * 120.00076 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.52602 * 325.12821 * 18 17 15 20 20 C 1.53240 * 109.52577 * 204.99938 * 18 17 15 21 21 C 1.53243 * 108.57199 * 184.48341 * 20 18 17 22 22 C 1.50583 * 109.16043 * 55.61301 * 21 20 18 23 23 O 1.21230 * 119.35647 * 150.88646 * 22 21 20 24 24 N 1.34144 * 121.28244 * 330.90885 * 22 21 20 25 25 C 1.34141 * 122.58580 * 0.54435 * 24 22 21 26 26 O 1.21219 * 119.35645 * 179.45532 * 25 24 22 27 27 C 1.38644 * 120.70747 * 359.72467 * 13 12 11 28 28 H 0.96997 * 120.00007 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.43901 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.37154 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99796 * 174.17742 * 14 13 12 32 32 H 0.96999 * 119.99418 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.62075 * 304.20900 * 20 18 17 34 34 H 1.09006 * 109.61997 * 64.56997 * 20 18 17 35 35 H 1.09001 * 109.52295 * 175.52445 * 21 20 18 36 36 H 1.09005 * 109.51985 * 295.64892 * 21 20 18 37 37 H 0.96996 * 118.69975 * 180.54282 * 24 22 21 38 38 H 1.08004 * 120.66844 * 180.30685 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.5476 2.0126 1.3984 5 1 3.5084 1.4578 -0.7580 6 1 1.4107 2.6689 -0.6405 7 6 2.0075 -1.2127 0.0005 8 1 1.5120 -2.1226 -0.3046 9 6 3.3648 -1.2462 0.4009 10 6 3.8551 -0.3585 1.3830 11 6 5.1719 -0.4237 1.7401 12 7 5.9902 -1.2988 1.1843 13 6 5.5855 -2.1554 0.2583 14 7 6.4959 -3.0572 -0.2924 15 6 7.8020 -2.9777 0.0301 16 8 8.1734 -2.1809 0.8700 17 7 8.6966 -3.7814 -0.5785 18 6 10.1164 -3.6946 -0.2283 19 1 10.3737 -2.6594 -0.0042 20 6 10.9651 -4.1901 -1.4041 21 6 12.4364 -4.1964 -0.9755 22 6 12.5848 -5.0294 0.2700 23 8 13.6324 -5.6020 0.4808 24 7 11.5802 -5.1507 1.1507 25 6 10.3910 -4.5550 0.9767 26 8 9.5205 -4.7124 1.8055 27 6 4.2653 -2.1693 -0.1648 28 1 -0.4850 0.8400 0.0004 29 1 3.1980 0.3632 1.8452 30 1 5.5513 0.2538 2.4908 31 1 6.1889 -3.7415 -0.9075 32 1 8.4003 -4.4168 -1.2488 33 1 10.6589 -5.2002 -1.6765 34 1 10.8323 -3.5249 -2.2573 35 1 13.0462 -4.6212 -1.7729 36 1 12.7611 -3.1757 -0.7731 37 1 11.7194 -5.6903 1.9446 38 1 3.9350 -2.8712 -0.9163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679668062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:28 Heat of formation + Delta-G solvation = -51.721478 kcal Electronic energy + Delta-G solvation = -25682.014794 eV Core-core repulsion = 21718.052914 eV Total energy + Delta-G solvation = -3963.961881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85874 -40.07192 -39.09863 -38.21361 -36.24496 -34.96389 -34.39217 -33.70465 -32.72694 -31.25914 -29.25535 -27.68786 -26.00241 -24.37361 -23.54956 -22.24265 -21.90145 -20.35628 -19.90155 -18.33780 -17.99274 -17.91454 -17.56376 -16.83863 -16.19517 -15.65177 -15.41502 -15.14126 -14.95141 -14.90380 -14.54451 -14.38388 -14.27539 -13.79866 -13.39361 -13.13543 -12.96905 -12.81073 -12.59094 -12.50467 -11.75739 -11.58778 -11.17757 -10.87234 -10.85251 -10.68927 -10.62225 -10.52116 -10.03687 -9.86294 -9.78532 -9.33308 -9.24315 -8.23118 -7.89037 -7.28001 -7.05422 -4.71896 1.18947 2.22713 2.36543 2.43887 2.62716 2.78417 3.09519 3.16699 3.26470 3.43454 3.69294 3.91780 3.97171 4.10740 4.13154 4.40330 4.53476 4.58775 4.87102 5.08134 5.17566 5.32793 5.39761 5.68779 5.69305 6.12217 6.24291 6.34009 6.48887 6.51982 6.56121 6.83311 7.05009 7.10873 7.14375 7.18400 7.52532 7.67217 7.92519 8.08193 8.23287 8.44596 8.66733 8.89541 9.46607 9.95992 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.038590 B = 0.002554 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.400584 B =10962.549000 C =10996.697616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.089 3.911 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.251 1.251 6 H -0.289 1.289 7 C -0.445 4.445 8 H 0.094 0.906 9 C 0.131 3.869 10 C -0.301 4.301 11 C 0.138 3.862 12 N -0.553 5.553 13 C 0.377 3.623 14 N -0.667 5.667 15 C 0.699 3.301 16 O -0.517 6.517 17 N -0.736 5.736 18 C 0.153 3.847 19 H 0.133 0.867 20 C -0.131 4.131 21 C -0.138 4.138 22 C 0.524 3.476 23 O -0.509 6.509 24 N -0.675 5.675 25 C 0.499 3.501 26 O -0.467 6.467 27 C -0.293 4.293 28 H 0.287 0.713 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.405 0.595 32 H 0.398 0.602 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.411 0.589 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.012 -7.052 -6.908 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.132 4.132 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.174 1.174 6 H -0.216 1.216 7 C -0.476 4.476 8 H 0.112 0.888 9 C 0.122 3.878 10 C -0.324 4.324 11 C -0.015 4.015 12 N -0.272 5.272 13 C 0.150 3.850 14 N -0.314 5.314 15 C 0.398 3.602 16 O -0.385 6.385 17 N -0.394 5.394 18 C 0.043 3.957 19 H 0.151 0.849 20 C -0.169 4.169 21 C -0.178 4.178 22 C 0.313 3.687 23 O -0.382 6.382 24 N -0.342 5.342 25 C 0.284 3.716 26 O -0.334 6.334 27 C -0.319 4.319 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.240 0.760 32 H 0.233 0.767 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.250 0.750 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 20.019 -6.467 -5.499 21.745 hybrid contribution -1.003 -0.283 -0.419 1.123 sum 19.017 -6.750 -5.917 21.029 Atomic orbital electron populations 1.69657 1.08188 1.30587 1.33940 1.26143 0.94657 1.01832 0.90528 0.86321 0.80427 0.79423 0.79889 1.18778 1.17438 1.21604 1.19406 0.92936 0.96372 1.38840 0.88827 1.17669 0.92735 0.89069 0.88292 1.21868 0.97445 1.07941 1.05167 1.21581 0.89799 0.94073 0.96010 1.67292 1.37696 1.08965 1.13222 1.17823 0.85919 0.89505 0.91743 1.42493 1.05346 1.34638 1.48941 1.15949 0.80917 0.81628 0.81702 1.91042 1.77559 1.38036 1.31911 1.44854 1.05152 1.43652 1.45780 1.20697 0.82423 1.01288 0.91321 0.84915 1.22039 0.92548 1.04146 0.98190 1.21888 0.98204 1.02381 0.95352 1.20989 0.82501 0.80380 0.84819 1.90800 1.26745 1.44567 1.76073 1.44996 1.14470 1.48921 1.25814 1.21766 0.81037 0.79613 0.89206 1.90861 1.43193 1.56654 1.42733 1.21200 0.91436 1.10231 1.09063 0.90192 0.86953 0.85444 0.76012 0.76704 0.89667 0.87558 0.86121 0.86451 0.74963 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.52 13.92 55.55 0.77 -19.75 16 2 C 0.09 2.26 5.40 -17.34 -0.09 2.16 16 3 Si 0.91 20.26 24.90 -169.99 -4.23 16.03 16 4 H -0.26 -5.64 6.34 56.52 0.36 -5.28 16 5 H -0.25 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.45 -11.62 9.61 -37.65 -0.36 -11.98 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.13 3.26 5.04 -106.55 -0.54 2.73 16 10 C -0.30 -7.26 7.41 -39.07 -0.29 -7.55 16 11 C 0.14 3.23 11.10 -18.04 -0.20 3.03 16 12 N -0.55 -13.41 7.86 -12.75 -0.10 -13.51 16 13 C 0.38 8.33 7.42 -154.68 -1.15 7.18 16 14 N -0.67 -11.35 5.40 -15.86 -0.09 -11.44 16 15 C 0.70 11.75 7.95 -86.92 -0.69 11.06 16 16 O -0.52 -11.14 14.18 5.30 0.08 -11.06 16 17 N -0.74 -7.75 4.88 -59.75 -0.29 -8.04 16 18 C 0.15 1.32 2.70 -69.02 -0.19 1.13 16 19 H 0.13 1.26 7.58 -51.93 -0.39 0.86 16 20 C -0.13 -0.47 5.56 -26.48 -0.15 -0.62 16 21 C -0.14 -0.50 6.07 -27.81 -0.17 -0.67 16 22 C 0.52 3.98 7.74 -11.32 -0.09 3.90 16 23 O -0.51 -5.61 17.88 5.60 0.10 -5.51 16 24 N -0.68 -5.76 5.09 -11.75 -0.06 -5.82 16 25 C 0.50 5.46 7.56 -11.32 -0.09 5.38 16 26 O -0.47 -7.55 16.90 5.61 0.09 -7.45 16 27 C -0.29 -6.62 9.74 -38.46 -0.37 -7.00 16 28 H 0.29 6.66 8.29 -40.82 -0.34 6.33 16 29 H 0.11 2.65 4.99 -52.49 -0.26 2.39 16 30 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 31 H 0.41 5.10 8.72 -40.82 -0.36 4.75 16 32 H 0.40 2.73 8.62 -40.82 -0.35 2.38 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.41 3.43 8.79 -40.82 -0.36 3.07 16 38 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -37.09 328.60 -7.00 -44.10 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -3.86 Total: 8.76 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -4.37 Total: 8.74 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.24 Total: -58.56 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.27 Total: -24.02 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.23 Total: 16.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.09 -7.00 -44.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679668062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.623 kcal (2) G-P(sol) polarization free energy of solvation -37.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds