Wall clock time and date at job start Tue Mar 31 2020 12:08:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30745 * 1
3 3 Si 1.86801 * 119.99991 * 2 1
4 4 H 1.48495 * 109.47061 * 92.77181 * 3 2 1
5 5 H 1.48497 * 109.47041 * 212.77765 * 3 2 1
6 6 H 1.48501 * 109.46958 * 332.77644 * 3 2 1
7 7 C 1.40031 * 119.99714 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00419 * 19.06665 * 7 2 1
9 9 C 1.41548 * 119.99825 * 199.06044 * 7 2 1
10 10 C 1.41170 * 120.99384 * 32.21379 * 9 7 2
11 11 C 1.36587 * 119.12610 * 180.02562 * 10 9 7
12 12 N 1.32074 * 121.25713 * 0.02562 * 11 10 9
13 13 C 1.32481 * 122.23090 * 359.97438 * 12 11 10
14 14 N 1.39468 * 119.64983 * 180.02562 * 13 12 11
15 15 C 1.34772 * 119.99694 * 354.17937 * 14 13 12
16 16 O 1.21579 * 120.00199 * 5.06237 * 15 14 13
17 17 N 1.34780 * 120.00047 * 185.06351 * 15 14 13
18 18 C 1.46492 * 120.00076 * 179.97438 * 17 15 14
19 19 H 1.09000 * 109.52602 * 325.12821 * 18 17 15
20 20 C 1.53240 * 109.52577 * 204.99938 * 18 17 15
21 21 C 1.53243 * 108.57199 * 184.48341 * 20 18 17
22 22 C 1.50583 * 109.16043 * 55.61301 * 21 20 18
23 23 O 1.21230 * 119.35647 * 150.88646 * 22 21 20
24 24 N 1.34144 * 121.28244 * 330.90885 * 22 21 20
25 25 C 1.34141 * 122.58580 * 0.54435 * 24 22 21
26 26 O 1.21219 * 119.35645 * 179.45532 * 25 24 22
27 27 C 1.38644 * 120.70747 * 359.72467 * 13 12 11
28 28 H 0.96997 * 120.00007 * 359.97438 * 1 2 3
29 29 H 1.07996 * 120.43901 * 359.97438 * 10 9 7
30 30 H 1.07999 * 119.37154 * 179.97438 * 11 10 9
31 31 H 0.97000 * 119.99796 * 174.17742 * 14 13 12
32 32 H 0.96999 * 119.99418 * 0.02562 * 17 15 14
33 33 H 1.09000 * 109.62075 * 304.20900 * 20 18 17
34 34 H 1.09006 * 109.61997 * 64.56997 * 20 18 17
35 35 H 1.09001 * 109.52295 * 175.52445 * 21 20 18
36 36 H 1.09005 * 109.51985 * 295.64892 * 21 20 18
37 37 H 0.96996 * 118.69975 * 180.54282 * 24 22 21
38 38 H 1.08004 * 120.66844 * 180.30685 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3075 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 2.5476 2.0126 1.3984
5 1 3.5084 1.4578 -0.7580
6 1 1.4107 2.6689 -0.6405
7 6 2.0075 -1.2127 0.0005
8 1 1.5120 -2.1226 -0.3046
9 6 3.3648 -1.2462 0.4009
10 6 3.8551 -0.3585 1.3830
11 6 5.1719 -0.4237 1.7401
12 7 5.9902 -1.2988 1.1843
13 6 5.5855 -2.1554 0.2583
14 7 6.4959 -3.0572 -0.2924
15 6 7.8020 -2.9777 0.0301
16 8 8.1734 -2.1809 0.8700
17 7 8.6966 -3.7814 -0.5785
18 6 10.1164 -3.6946 -0.2283
19 1 10.3737 -2.6594 -0.0042
20 6 10.9651 -4.1901 -1.4041
21 6 12.4364 -4.1964 -0.9755
22 6 12.5848 -5.0294 0.2700
23 8 13.6324 -5.6020 0.4808
24 7 11.5802 -5.1507 1.1507
25 6 10.3910 -4.5550 0.9767
26 8 9.5205 -4.7124 1.8055
27 6 4.2653 -2.1693 -0.1648
28 1 -0.4850 0.8400 0.0004
29 1 3.1980 0.3632 1.8452
30 1 5.5513 0.2538 2.4908
31 1 6.1889 -3.7415 -0.9075
32 1 8.4003 -4.4168 -1.2488
33 1 10.6589 -5.2002 -1.6765
34 1 10.8323 -3.5249 -2.2573
35 1 13.0462 -4.6212 -1.7729
36 1 12.7611 -3.1757 -0.7731
37 1 11.7194 -5.6903 1.9446
38 1 3.9350 -2.8712 -0.9163
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001679668062.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:28
Heat of formation + Delta-G solvation = -51.721478 kcal
Electronic energy + Delta-G solvation = -25682.014794 eV
Core-core repulsion = 21718.052914 eV
Total energy + Delta-G solvation = -3963.961881 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 318.116 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.85874 -40.07192 -39.09863 -38.21361 -36.24496 -34.96389 -34.39217 -33.70465
-32.72694 -31.25914 -29.25535 -27.68786 -26.00241 -24.37361 -23.54956 -22.24265
-21.90145 -20.35628 -19.90155 -18.33780 -17.99274 -17.91454 -17.56376 -16.83863
-16.19517 -15.65177 -15.41502 -15.14126 -14.95141 -14.90380 -14.54451 -14.38388
-14.27539 -13.79866 -13.39361 -13.13543 -12.96905 -12.81073 -12.59094 -12.50467
-11.75739 -11.58778 -11.17757 -10.87234 -10.85251 -10.68927 -10.62225 -10.52116
-10.03687 -9.86294 -9.78532 -9.33308 -9.24315 -8.23118 -7.89037 -7.28001
-7.05422 -4.71896 1.18947 2.22713 2.36543 2.43887 2.62716 2.78417
3.09519 3.16699 3.26470 3.43454 3.69294 3.91780 3.97171 4.10740
4.13154 4.40330 4.53476 4.58775 4.87102 5.08134 5.17566 5.32793
5.39761 5.68779 5.69305 6.12217 6.24291 6.34009 6.48887 6.51982
6.56121 6.83311 7.05009 7.10873 7.14375 7.18400 7.52532 7.67217
7.92519 8.08193 8.23287 8.44596 8.66733 8.89541 9.46607 9.95992
Molecular weight = 318.12amu
Principal moments of inertia in cm(-1)
A = 0.038590 B = 0.002554 C = 0.002546
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 725.400584 B =10962.549000 C =10996.697616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.800 5.800
2 C 0.089 3.911
3 Si 0.914 3.086
4 H -0.262 1.262
5 H -0.251 1.251
6 H -0.289 1.289
7 C -0.445 4.445
8 H 0.094 0.906
9 C 0.131 3.869
10 C -0.301 4.301
11 C 0.138 3.862
12 N -0.553 5.553
13 C 0.377 3.623
14 N -0.667 5.667
15 C 0.699 3.301
16 O -0.517 6.517
17 N -0.736 5.736
18 C 0.153 3.847
19 H 0.133 0.867
20 C -0.131 4.131
21 C -0.138 4.138
22 C 0.524 3.476
23 O -0.509 6.509
24 N -0.675 5.675
25 C 0.499 3.501
26 O -0.467 6.467
27 C -0.293 4.293
28 H 0.287 0.713
29 H 0.113 0.887
30 H 0.128 0.872
31 H 0.405 0.595
32 H 0.398 0.602
33 H 0.085 0.915
34 H 0.106 0.894
35 H 0.121 0.879
36 H 0.117 0.883
37 H 0.411 0.589
38 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.012 -7.052 -6.908 21.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.424 5.424
2 C -0.132 4.132
3 Si 0.739 3.261
4 H -0.188 1.188
5 H -0.174 1.174
6 H -0.216 1.216
7 C -0.476 4.476
8 H 0.112 0.888
9 C 0.122 3.878
10 C -0.324 4.324
11 C -0.015 4.015
12 N -0.272 5.272
13 C 0.150 3.850
14 N -0.314 5.314
15 C 0.398 3.602
16 O -0.385 6.385
17 N -0.394 5.394
18 C 0.043 3.957
19 H 0.151 0.849
20 C -0.169 4.169
21 C -0.178 4.178
22 C 0.313 3.687
23 O -0.382 6.382
24 N -0.342 5.342
25 C 0.284 3.716
26 O -0.334 6.334
27 C -0.319 4.319
28 H 0.098 0.902
29 H 0.130 0.870
30 H 0.146 0.854
31 H 0.240 0.760
32 H 0.233 0.767
33 H 0.103 0.897
34 H 0.124 0.876
35 H 0.139 0.861
36 H 0.135 0.865
37 H 0.250 0.750
38 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 20.019 -6.467 -5.499 21.745
hybrid contribution -1.003 -0.283 -0.419 1.123
sum 19.017 -6.750 -5.917 21.029
Atomic orbital electron populations
1.69657 1.08188 1.30587 1.33940 1.26143 0.94657 1.01832 0.90528
0.86321 0.80427 0.79423 0.79889 1.18778 1.17438 1.21604 1.19406
0.92936 0.96372 1.38840 0.88827 1.17669 0.92735 0.89069 0.88292
1.21868 0.97445 1.07941 1.05167 1.21581 0.89799 0.94073 0.96010
1.67292 1.37696 1.08965 1.13222 1.17823 0.85919 0.89505 0.91743
1.42493 1.05346 1.34638 1.48941 1.15949 0.80917 0.81628 0.81702
1.91042 1.77559 1.38036 1.31911 1.44854 1.05152 1.43652 1.45780
1.20697 0.82423 1.01288 0.91321 0.84915 1.22039 0.92548 1.04146
0.98190 1.21888 0.98204 1.02381 0.95352 1.20989 0.82501 0.80380
0.84819 1.90800 1.26745 1.44567 1.76073 1.44996 1.14470 1.48921
1.25814 1.21766 0.81037 0.79613 0.89206 1.90861 1.43193 1.56654
1.42733 1.21200 0.91436 1.10231 1.09063 0.90192 0.86953 0.85444
0.76012 0.76704 0.89667 0.87558 0.86121 0.86451 0.74963 0.87266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -20.52 13.92 55.55 0.77 -19.75 16
2 C 0.09 2.26 5.40 -17.34 -0.09 2.16 16
3 Si 0.91 20.26 24.90 -169.99 -4.23 16.03 16
4 H -0.26 -5.64 6.34 56.52 0.36 -5.28 16
5 H -0.25 -5.78 7.11 56.52 0.40 -5.38 16
6 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16
7 C -0.45 -11.62 9.61 -37.65 -0.36 -11.98 16
8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16
9 C 0.13 3.26 5.04 -106.55 -0.54 2.73 16
10 C -0.30 -7.26 7.41 -39.07 -0.29 -7.55 16
11 C 0.14 3.23 11.10 -18.04 -0.20 3.03 16
12 N -0.55 -13.41 7.86 -12.75 -0.10 -13.51 16
13 C 0.38 8.33 7.42 -154.68 -1.15 7.18 16
14 N -0.67 -11.35 5.40 -15.86 -0.09 -11.44 16
15 C 0.70 11.75 7.95 -86.92 -0.69 11.06 16
16 O -0.52 -11.14 14.18 5.30 0.08 -11.06 16
17 N -0.74 -7.75 4.88 -59.75 -0.29 -8.04 16
18 C 0.15 1.32 2.70 -69.02 -0.19 1.13 16
19 H 0.13 1.26 7.58 -51.93 -0.39 0.86 16
20 C -0.13 -0.47 5.56 -26.48 -0.15 -0.62 16
21 C -0.14 -0.50 6.07 -27.81 -0.17 -0.67 16
22 C 0.52 3.98 7.74 -11.32 -0.09 3.90 16
23 O -0.51 -5.61 17.88 5.60 0.10 -5.51 16
24 N -0.68 -5.76 5.09 -11.75 -0.06 -5.82 16
25 C 0.50 5.46 7.56 -11.32 -0.09 5.38 16
26 O -0.47 -7.55 16.90 5.61 0.09 -7.45 16
27 C -0.29 -6.62 9.74 -38.46 -0.37 -7.00 16
28 H 0.29 6.66 8.29 -40.82 -0.34 6.33 16
29 H 0.11 2.65 4.99 -52.49 -0.26 2.39 16
30 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16
31 H 0.41 5.10 8.72 -40.82 -0.36 4.75 16
32 H 0.40 2.73 8.62 -40.82 -0.35 2.38 16
33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16
34 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16
35 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16
36 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16
37 H 0.41 3.43 8.79 -40.82 -0.36 3.07 16
38 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16
LS Contribution 328.60 15.07 4.95 4.95
Total: -1.00 -37.09 328.60 -7.00 -44.10
By element:
Atomic # 1 Polarization: 12.62 SS G_CDS: -3.86 Total: 8.76 kcal
Atomic # 6 Polarization: 13.11 SS G_CDS: -4.37 Total: 8.74 kcal
Atomic # 7 Polarization: -58.79 SS G_CDS: 0.24 Total: -58.56 kcal
Atomic # 8 Polarization: -24.29 SS G_CDS: 0.27 Total: -24.02 kcal
Atomic # 14 Polarization: 20.26 SS G_CDS: -4.23 Total: 16.03 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -37.09 -7.00 -44.10 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001679668062.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.623 kcal
(2) G-P(sol) polarization free energy of solvation -37.094 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.717 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds