Wall clock time and date at job start Tue Mar 31 2020 12:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48495 * 109.47061 * 92.77181 * 3 2 1 5 5 H 1.48497 * 109.47041 * 212.77765 * 3 2 1 6 6 H 1.48501 * 109.46958 * 332.77644 * 3 2 1 7 7 C 1.40031 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00419 * 19.06665 * 7 2 1 9 9 C 1.41548 * 119.99825 * 199.06044 * 7 2 1 10 10 C 1.41170 * 120.99384 * 32.21379 * 9 7 2 11 11 C 1.36587 * 119.12610 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.25713 * 0.02562 * 11 10 9 13 13 C 1.32481 * 122.23090 * 359.97438 * 12 11 10 14 14 N 1.39468 * 119.64983 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99694 * 354.17937 * 14 13 12 16 16 O 1.21579 * 120.00199 * 5.06237 * 15 14 13 17 17 N 1.34780 * 120.00047 * 185.06351 * 15 14 13 18 18 C 1.46492 * 120.00076 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.52602 * 325.12821 * 18 17 15 20 20 C 1.53240 * 109.52577 * 204.99938 * 18 17 15 21 21 C 1.53243 * 108.57199 * 184.48341 * 20 18 17 22 22 C 1.50583 * 109.16043 * 55.61301 * 21 20 18 23 23 O 1.21230 * 119.35647 * 150.88646 * 22 21 20 24 24 N 1.34144 * 121.28244 * 330.90885 * 22 21 20 25 25 C 1.34141 * 122.58580 * 0.54435 * 24 22 21 26 26 O 1.21219 * 119.35645 * 179.45532 * 25 24 22 27 27 C 1.38644 * 120.70747 * 359.72467 * 13 12 11 28 28 H 0.96997 * 120.00007 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.43901 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.37154 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99796 * 174.17742 * 14 13 12 32 32 H 0.96999 * 119.99418 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.62075 * 304.20900 * 20 18 17 34 34 H 1.09006 * 109.61997 * 64.56997 * 20 18 17 35 35 H 1.09001 * 109.52295 * 175.52445 * 21 20 18 36 36 H 1.09005 * 109.51985 * 295.64892 * 21 20 18 37 37 H 0.96996 * 118.69975 * 180.54282 * 24 22 21 38 38 H 1.08004 * 120.66844 * 180.30685 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.5476 2.0126 1.3984 5 1 3.5084 1.4578 -0.7580 6 1 1.4107 2.6689 -0.6405 7 6 2.0075 -1.2127 0.0005 8 1 1.5120 -2.1226 -0.3046 9 6 3.3648 -1.2462 0.4009 10 6 3.8551 -0.3585 1.3830 11 6 5.1719 -0.4237 1.7401 12 7 5.9902 -1.2988 1.1843 13 6 5.5855 -2.1554 0.2583 14 7 6.4959 -3.0572 -0.2924 15 6 7.8020 -2.9777 0.0301 16 8 8.1734 -2.1809 0.8700 17 7 8.6966 -3.7814 -0.5785 18 6 10.1164 -3.6946 -0.2283 19 1 10.3737 -2.6594 -0.0042 20 6 10.9651 -4.1901 -1.4041 21 6 12.4364 -4.1964 -0.9755 22 6 12.5848 -5.0294 0.2700 23 8 13.6324 -5.6020 0.4808 24 7 11.5802 -5.1507 1.1507 25 6 10.3910 -4.5550 0.9767 26 8 9.5205 -4.7124 1.8055 27 6 4.2653 -2.1693 -0.1648 28 1 -0.4850 0.8400 0.0004 29 1 3.1980 0.3632 1.8452 30 1 5.5513 0.2538 2.4908 31 1 6.1889 -3.7415 -0.9075 32 1 8.4003 -4.4168 -1.2488 33 1 10.6589 -5.2002 -1.6765 34 1 10.8323 -3.5249 -2.2573 35 1 13.0462 -4.6212 -1.7729 36 1 12.7611 -3.1757 -0.7731 37 1 11.7194 -5.6903 1.9446 38 1 3.9350 -2.8712 -0.9163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679668062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:27 Heat of formation + Delta-G solvation = -82.654465 kcal Electronic energy + Delta-G solvation = -25683.356149 eV Core-core repulsion = 21718.052914 eV Total energy + Delta-G solvation = -3965.303236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.63590 -41.41768 -40.21460 -39.63406 -37.09617 -36.21683 -35.68918 -35.42513 -33.51347 -33.10538 -30.75167 -28.62373 -27.89084 -24.90437 -24.52825 -23.73776 -23.51256 -21.76356 -20.66603 -19.89344 -19.30069 -18.77873 -18.31928 -17.99223 -17.53627 -17.15854 -16.45597 -16.39145 -16.22240 -16.06431 -15.70153 -15.54286 -15.43388 -15.18578 -14.88220 -14.62740 -14.38016 -13.92759 -13.45708 -13.39243 -13.03224 -12.91238 -12.75879 -12.48632 -12.14113 -11.78289 -11.72882 -11.50495 -11.37965 -11.33622 -11.31883 -11.14851 -10.27788 -10.12034 -9.68084 -8.98567 -8.93258 -6.68556 0.43155 0.61622 0.77814 1.30549 1.33006 1.42274 1.49345 1.67667 1.87763 2.11764 2.26191 2.70502 2.91143 3.06782 3.49404 3.55955 3.60341 3.91216 4.01533 4.14222 4.42662 4.51407 4.67298 4.70356 4.74535 4.79097 4.89035 4.99454 5.09553 5.21584 5.24828 5.29942 5.45655 5.74308 5.79075 5.86405 6.14273 6.31164 6.34984 6.54935 6.72274 6.76428 6.90635 7.52875 7.78682 8.11312 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.038590 B = 0.002554 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.400584 B =10962.549000 C =10996.697616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.059 3.941 3 Si 0.962 3.038 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.474 4.474 8 H 0.069 0.931 9 C 0.116 3.884 10 C -0.312 4.312 11 C 0.134 3.866 12 N -0.572 5.572 13 C 0.378 3.622 14 N -0.657 5.657 15 C 0.695 3.305 16 O -0.566 6.566 17 N -0.712 5.712 18 C 0.150 3.850 19 H 0.128 0.872 20 C -0.115 4.115 21 C -0.129 4.129 22 C 0.526 3.474 23 O -0.543 6.543 24 N -0.672 5.672 25 C 0.505 3.495 26 O -0.528 6.528 27 C -0.297 4.297 28 H 0.298 0.702 29 H 0.115 0.885 30 H 0.152 0.848 31 H 0.426 0.574 32 H 0.420 0.580 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.408 0.592 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.267 -6.912 -8.852 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.159 4.159 3 Si 0.785 3.215 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.505 4.505 8 H 0.087 0.913 9 C 0.107 3.893 10 C -0.335 4.335 11 C -0.019 4.019 12 N -0.291 5.291 13 C 0.149 3.851 14 N -0.307 5.307 15 C 0.395 3.605 16 O -0.439 6.439 17 N -0.370 5.370 18 C 0.040 3.960 19 H 0.146 0.854 20 C -0.153 4.153 21 C -0.169 4.169 22 C 0.317 3.683 23 O -0.419 6.419 24 N -0.337 5.337 25 C 0.293 3.707 26 O -0.400 6.400 27 C -0.323 4.323 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.170 0.830 31 H 0.264 0.736 32 H 0.258 0.742 33 H 0.121 0.879 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.247 0.753 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.310 -6.400 -7.524 24.399 hybrid contribution -1.523 -0.480 0.205 1.610 sum 20.787 -6.880 -7.319 23.087 Atomic orbital electron populations 1.69665 1.09096 1.31918 1.35039 1.26731 0.95205 1.03994 0.89963 0.85586 0.78861 0.76768 0.80306 1.17636 1.18907 1.19700 1.19397 0.93879 0.96178 1.40999 0.91281 1.17866 0.92676 0.90076 0.88634 1.21944 0.97950 1.08240 1.05383 1.21987 0.89516 0.94203 0.96216 1.67433 1.38257 1.09538 1.13891 1.18033 0.86669 0.89429 0.90922 1.42356 1.05241 1.34209 1.48869 1.16169 0.81112 0.81837 0.81374 1.91011 1.78348 1.40392 1.34166 1.44570 1.05207 1.42424 1.44849 1.21051 0.81688 1.00769 0.92533 0.85449 1.22080 0.91038 1.05701 0.96441 1.22033 0.98604 1.02632 0.93597 1.21833 0.81286 0.79773 0.85363 1.90796 1.27939 1.46164 1.76950 1.45036 1.14244 1.48303 1.26073 1.22230 0.80649 0.78823 0.89021 1.90844 1.45194 1.59097 1.44897 1.21404 0.91547 1.10024 1.09283 0.89140 0.86708 0.83039 0.73555 0.74161 0.87917 0.84468 0.83448 0.84481 0.75338 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.21 13.92 21.84 0.30 -42.91 16 2 C 0.06 3.01 5.40 85.29 0.46 3.47 16 3 Si 0.96 41.29 24.90 68.60 1.71 42.99 16 4 H -0.25 -10.28 6.34 99.48 0.63 -9.65 16 5 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.47 -25.33 9.61 23.52 0.23 -25.10 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 9 C 0.12 5.82 5.04 -21.11 -0.11 5.71 16 10 C -0.31 -14.96 7.41 22.60 0.17 -14.79 16 11 C 0.13 6.17 11.10 84.27 0.94 7.10 16 12 N -0.57 -27.38 7.86 -194.27 -1.53 -28.91 16 13 C 0.38 16.36 7.42 132.76 0.98 17.34 16 14 N -0.66 -21.30 5.40 -322.37 -1.74 -23.04 16 15 C 0.70 22.34 7.95 179.05 1.42 23.77 16 16 O -0.57 -24.11 14.18 -3.96 -0.06 -24.17 16 17 N -0.71 -13.11 4.88 -461.21 -2.25 -15.36 16 18 C 0.15 2.17 2.70 44.29 0.12 2.29 16 19 H 0.13 2.13 7.58 -2.39 -0.02 2.11 16 20 C -0.11 -0.28 5.56 30.76 0.17 -0.11 16 21 C -0.13 -0.38 6.07 29.89 0.18 -0.20 16 22 C 0.53 6.82 7.74 87.72 0.68 7.49 16 23 O -0.54 -11.15 17.88 -2.88 -0.05 -11.20 16 24 N -0.67 -10.79 5.09 -428.63 -2.18 -12.98 16 25 C 0.51 10.55 7.56 87.72 0.66 11.21 16 26 O -0.53 -17.26 16.90 -2.84 -0.05 -17.31 16 27 C -0.30 -13.28 9.74 23.00 0.22 -13.05 16 28 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 29 H 0.12 5.36 4.99 -2.91 -0.01 5.35 16 30 H 0.15 6.05 8.06 -2.91 -0.02 6.03 16 31 H 0.43 9.72 8.72 -92.71 -0.81 8.91 16 32 H 0.42 4.20 8.62 -92.71 -0.80 3.40 16 33 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.14 -0.31 8.14 -2.38 -0.02 -0.33 16 35 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.14 0.00 8.14 -2.38 -0.02 -0.02 16 37 H 0.41 6.84 8.79 -92.71 -0.81 6.03 16 38 H 0.13 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -84.26 328.60 -1.04 -85.30 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -1.33 Total: 22.43 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 6.13 Total: 25.14 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -7.40 Total: -123.19 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.16 Total: -52.67 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.71 Total: 42.99 kcal Total: -84.26 -1.04 -85.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679668062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.650 kcal (2) G-P(sol) polarization free energy of solvation -84.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds