Wall clock time and date at job start Tue Mar 31 2020 12:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46852 * 300.00460 * 3 2 1 6 6 H 1.48496 * 109.47138 * 60.00135 * 3 2 1 7 7 C 1.40028 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00159 * 192.08601 * 7 2 1 9 9 C 1.41543 * 120.00350 * 12.07765 * 7 2 1 10 10 C 1.41160 * 121.00389 * 201.03917 * 9 7 2 11 11 C 1.36592 * 119.13186 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25620 * 359.97438 * 11 10 9 13 13 C 1.32487 * 122.23161 * 0.02562 * 12 11 10 14 14 N 1.39461 * 119.64960 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99959 * 354.34811 * 14 13 12 16 16 O 1.21582 * 119.99698 * 3.99105 * 15 14 13 17 17 N 1.34773 * 120.00218 * 183.99736 * 15 14 13 18 18 C 1.46501 * 120.00172 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.51916 * 35.12230 * 18 17 15 20 20 C 1.53234 * 109.52341 * 155.31777 * 18 17 15 21 21 C 1.53221 * 108.58079 * 175.50927 * 20 18 17 22 22 C 1.50591 * 109.18057 * 304.42624 * 21 20 18 23 23 O 1.21229 * 119.36071 * 209.06153 * 22 21 20 24 24 N 1.34139 * 121.27907 * 29.04150 * 22 21 20 25 25 C 1.34140 * 122.58985 * 359.47937 * 24 22 21 26 26 O 1.21232 * 119.36324 * 180.55011 * 25 24 22 27 27 C 1.38641 * 120.70471 * 0.25646 * 13 12 11 28 28 H 0.97003 * 120.00084 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.42798 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.36988 * 179.97438 * 11 10 9 31 31 H 0.96999 * 120.00376 * 174.07523 * 14 13 12 32 32 H 0.97001 * 120.00105 * 0.02562 * 17 15 14 33 33 H 1.09002 * 109.62175 * 295.24091 * 20 18 17 34 34 H 1.08994 * 109.62577 * 55.79422 * 20 18 17 35 35 H 1.08998 * 109.54191 * 184.50054 * 21 20 18 36 36 H 1.09003 * 109.53997 * 64.34729 * 21 20 18 37 37 H 0.97005 * 118.70866 * 179.50014 * 24 22 21 38 38 H 1.07997 * 120.66690 * 179.71944 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0696 -1.2232 0.1953 9 6 1.3234 -2.4248 -0.2576 10 6 1.8604 -3.6640 0.1530 11 6 1.1680 -4.8105 -0.1153 12 7 0.0098 -4.7790 -0.7491 13 6 -0.5417 -3.6457 -1.1575 14 7 -1.7671 -3.6752 -1.8227 15 6 -2.3290 -4.8563 -2.1480 16 8 -1.8044 -5.8959 -1.7982 17 7 -3.4722 -4.8849 -2.8612 18 6 -4.0827 -6.1687 -3.2153 19 1 -3.9265 -6.8819 -2.4059 20 6 -5.5851 -5.9750 -3.4463 21 6 -6.1809 -7.3033 -3.9238 22 6 -5.4362 -7.7682 -5.1474 23 8 -6.0119 -8.4448 -5.9723 24 7 -4.1483 -7.4478 -5.3424 25 6 -3.4523 -6.6946 -4.4778 26 8 -2.2932 -6.4322 -4.7173 27 6 0.0892 -2.4313 -0.9358 28 1 -0.4850 0.8401 0.0004 29 1 2.8064 -3.7050 0.6726 30 1 1.5755 -5.7607 0.1967 31 1 -2.2169 -2.8458 -2.0476 32 1 -3.8905 -4.0556 -3.1406 33 1 -6.0629 -5.6736 -2.5140 34 1 -5.7430 -5.2093 -4.2057 35 1 -7.2336 -7.1634 -4.1695 36 1 -6.0870 -8.0496 -3.1349 37 1 -3.7028 -7.7734 -6.1402 38 1 -0.3587 -1.5082 -1.2729 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679668063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:30 Heat of formation + Delta-G solvation = -53.238453 kcal Electronic energy + Delta-G solvation = -25788.158839 eV Core-core repulsion = 21824.131177 eV Total energy + Delta-G solvation = -3964.027662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76630 -39.87472 -38.95874 -37.95953 -36.13001 -34.83576 -34.24111 -33.76225 -32.61690 -30.48351 -28.95563 -27.47842 -26.00720 -24.28347 -23.42198 -22.02527 -21.72776 -20.22731 -19.81344 -18.14401 -17.91671 -17.69977 -17.46251 -16.72838 -16.05410 -15.43564 -15.28506 -14.98294 -14.83451 -14.75545 -14.37322 -14.18472 -14.13530 -13.56184 -13.30542 -12.91790 -12.74261 -12.61335 -12.44910 -12.31053 -11.66449 -11.45714 -11.16659 -10.91446 -10.75903 -10.54936 -10.43957 -10.28107 -10.10515 -9.78884 -9.65347 -9.40055 -9.10198 -7.98568 -7.71972 -7.02271 -6.74869 -4.63075 1.27266 2.35242 2.48239 2.70017 2.80640 2.93206 3.00625 3.06193 3.25240 3.55030 3.83289 3.85488 4.08602 4.21308 4.25890 4.55927 4.61956 4.70634 4.96518 5.15027 5.26257 5.42248 5.72660 5.76748 5.94383 6.26845 6.53931 6.59930 6.62505 6.81438 6.92729 7.12923 7.16382 7.18784 7.43955 7.49976 7.61502 7.87976 8.09093 8.32300 8.47165 8.73628 8.76198 9.11373 9.74872 10.05501 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.002708 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.696759 B =10337.178288 C =10824.202794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.448 4.448 8 H 0.082 0.918 9 C 0.139 3.861 10 C -0.285 4.285 11 C 0.120 3.880 12 N -0.553 5.553 13 C 0.354 3.646 14 N -0.663 5.663 15 C 0.698 3.302 16 O -0.521 6.521 17 N -0.737 5.737 18 C 0.154 3.846 19 H 0.133 0.867 20 C -0.131 4.131 21 C -0.138 4.138 22 C 0.525 3.475 23 O -0.510 6.510 24 N -0.675 5.675 25 C 0.498 3.502 26 O -0.465 6.465 27 C -0.249 4.249 28 H 0.280 0.720 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.405 0.595 32 H 0.398 0.602 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.410 0.590 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 -5.059 -6.146 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.308 4.308 11 C -0.034 4.034 12 N -0.272 5.272 13 C 0.128 3.872 14 N -0.311 5.311 15 C 0.397 3.603 16 O -0.390 6.390 17 N -0.396 5.396 18 C 0.043 3.957 19 H 0.150 0.850 20 C -0.169 4.169 21 C -0.178 4.178 22 C 0.313 3.687 23 O -0.384 6.384 24 N -0.342 5.342 25 C 0.283 3.717 26 O -0.333 6.333 27 C -0.274 4.274 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.239 0.761 32 H 0.232 0.768 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.250 0.750 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.309 -6.817 -6.336 17.069 hybrid contribution 0.620 2.239 -0.490 2.374 sum -13.688 -4.578 -6.826 15.966 Atomic orbital electron populations 1.69746 1.07621 1.28969 1.35427 1.25978 0.94866 1.01559 0.91960 0.86157 0.80923 0.80475 0.78584 1.18321 1.19675 1.19872 1.19649 0.96419 0.90192 1.41675 0.90014 1.17589 0.90531 0.92274 0.86527 1.21652 1.03531 0.94076 1.11589 1.21453 0.90440 0.96678 0.94837 1.67173 1.13558 1.27479 1.18991 1.17958 0.84969 0.90890 0.93399 1.42455 1.21476 1.07163 1.60001 1.15976 0.80101 0.85050 0.79148 1.91023 1.61245 1.30836 1.55934 1.44879 1.27500 1.06979 1.60229 1.20671 0.91611 0.88853 0.94522 0.84998 1.22035 0.92579 0.97663 1.04649 1.21886 1.01603 0.98607 0.95722 1.20990 0.81143 0.78334 0.88192 1.90793 1.66631 1.36026 1.44914 1.45006 1.13351 1.49804 1.26054 1.21813 0.87089 0.77382 0.85445 1.90868 1.15983 1.52733 1.73686 1.21765 1.00477 0.95697 1.09503 0.90905 0.88086 0.86082 0.76085 0.76780 0.87586 0.89678 0.86180 0.86490 0.75025 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.01 10.51 55.55 0.58 -18.42 16 2 C 0.07 1.77 5.31 -17.34 -0.09 1.68 16 3 Si 0.91 17.74 29.58 -169.99 -5.03 12.71 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.46 9.15 -37.65 -0.34 -11.80 16 8 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 9 C 0.14 3.67 5.65 -106.55 -0.60 3.06 16 10 C -0.28 -7.04 9.85 -39.07 -0.38 -7.42 16 11 C 0.12 2.92 11.10 -18.05 -0.20 2.72 16 12 N -0.55 -14.34 7.86 -12.76 -0.10 -14.45 16 13 C 0.35 8.63 7.42 -154.68 -1.15 7.48 16 14 N -0.66 -12.88 5.40 -15.86 -0.09 -12.97 16 15 C 0.70 12.99 7.94 -86.92 -0.69 12.30 16 16 O -0.52 -12.04 14.16 5.29 0.07 -11.97 16 17 N -0.74 -8.92 4.89 -59.74 -0.29 -9.22 16 18 C 0.15 1.51 2.70 -69.01 -0.19 1.32 16 19 H 0.13 1.39 7.58 -51.93 -0.39 1.00 16 20 C -0.13 -0.61 5.56 -26.50 -0.15 -0.75 16 21 C -0.14 -0.61 6.07 -27.82 -0.17 -0.78 16 22 C 0.52 4.40 7.74 -11.32 -0.09 4.32 16 23 O -0.51 -5.97 17.88 5.60 0.10 -5.87 16 24 N -0.68 -6.38 5.09 -11.75 -0.06 -6.44 16 25 C 0.50 6.01 7.56 -11.32 -0.09 5.93 16 26 O -0.47 -8.12 16.86 5.60 0.09 -8.03 16 27 C -0.25 -6.29 8.67 -38.45 -0.33 -6.63 16 28 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 29 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 30 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 31 H 0.40 6.30 8.71 -40.82 -0.36 5.95 16 32 H 0.40 3.42 8.62 -40.82 -0.35 3.07 16 33 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.41 3.78 8.79 -40.82 -0.36 3.42 16 38 H 0.14 3.46 5.82 -52.49 -0.31 3.15 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -36.87 332.63 -8.02 -44.89 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -3.85 Total: 13.34 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -4.47 Total: 11.42 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.05 Total: -61.50 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.27 Total: -25.87 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.87 -8.02 -44.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679668063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.352 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds