Wall clock time and date at job start Tue Mar 31 2020 11:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 C 1.53005 * 109.47178 * 239.99420 * 2 1 3 5 5 N 1.46508 * 109.46710 * 65.00036 * 4 2 1 6 6 C 1.36933 * 120.00051 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99821 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00213 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99604 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00133 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47309 * 89.99708 * 10 8 6 12 12 H 1.48501 * 109.47036 * 209.99727 * 10 8 6 13 13 H 1.48502 * 109.47179 * 329.99833 * 10 8 6 14 14 C 1.53001 * 109.47205 * 120.00087 * 2 1 3 15 15 N 1.46502 * 109.46824 * 294.99827 * 14 2 1 16 16 C 1.34780 * 120.00129 * 180.02562 * 15 14 2 17 17 O 1.21639 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.47183 * 120.00383 * 179.97438 * 16 15 14 19 19 C 1.36013 * 123.45887 * 0.02562 * 18 16 15 20 20 S 1.70444 * 110.81665 * 179.97438 * 19 18 16 21 21 C 1.75500 * 92.44757 * 359.97438 * 20 19 18 22 22 C 1.32774 * 110.57366 * 359.97438 * 21 20 19 23 23 C 1.50700 * 123.45879 * 179.73404 * 22 21 20 24 24 F 1.39901 * 109.47035 * 120.01945 * 23 22 21 25 25 F 1.39890 * 109.47376 * 240.02695 * 23 22 21 26 26 H 1.09005 * 109.47160 * 300.00108 * 1 2 3 27 27 H 1.08998 * 109.47413 * 60.00246 * 1 2 3 28 28 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47061 * 185.00111 * 4 2 1 30 30 H 1.08998 * 109.47125 * 305.00659 * 4 2 1 31 31 H 0.97000 * 119.99785 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99704 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47061 * 174.99829 * 14 2 1 34 34 H 1.09004 * 109.47667 * 54.99527 * 14 2 1 35 35 H 0.96998 * 120.00483 * 359.97438 * 15 14 2 36 36 H 1.08003 * 124.59171 * 359.97438 * 19 18 16 37 37 H 1.07996 * 124.71450 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.47032 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 2.0009 -0.4210 -3.6856 7 1 2.5620 -1.3383 -3.7864 8 6 1.6342 0.2961 -4.8161 9 7 0.9509 1.4143 -4.6931 10 14 2.1103 -0.3258 -6.5119 11 1 1.0399 -1.2141 -7.0320 12 1 2.2863 0.8275 -7.4307 13 1 3.3832 -1.0853 -6.4213 14 6 2.0400 -0.7213 1.2492 15 7 1.6524 0.0354 2.4424 16 6 1.9964 -0.4130 3.6660 17 8 2.6283 -1.4461 3.7796 18 6 1.6076 0.3475 4.8646 19 6 0.9015 1.5091 4.8194 20 16 0.6285 2.1135 6.3896 21 6 1.4829 0.7740 7.1351 22 6 1.9347 -0.0642 6.2097 23 6 2.7156 -1.3127 6.5297 24 9 2.0265 -2.4304 6.0467 25 9 3.9746 -1.2434 5.9240 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6053 -1.7199 -1.2951 31 1 1.1488 0.8593 -2.3518 32 1 0.6943 1.9152 -5.4831 33 1 3.1263 -0.7995 1.2055 34 1 1.6053 -1.7198 1.2953 35 1 1.1489 0.8595 2.3518 36 1 0.5600 1.9842 3.9116 37 1 1.6218 0.6488 8.1987 38 1 2.8362 -1.3991 7.6096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698747702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:50 Heat of formation + Delta-G solvation = -123.789698 kcal Electronic energy + Delta-G solvation = -23881.345234 eV Core-core repulsion = 19906.321925 eV Total energy + Delta-G solvation = -3975.023308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.71223 -47.76193 -41.02086 -38.59462 -37.85804 -36.00227 -34.22330 -32.27370 -31.35633 -28.13810 -27.61631 -26.96312 -25.31490 -24.21158 -22.10031 -21.53066 -20.19595 -19.42880 -18.98686 -18.45570 -18.00965 -17.58587 -17.09554 -16.79818 -16.58011 -16.31220 -15.68312 -15.49060 -15.16725 -14.72660 -14.65121 -14.25998 -14.18951 -14.12811 -14.01047 -13.87193 -13.60851 -13.50626 -13.47922 -12.97818 -12.80516 -12.47156 -12.21799 -12.18225 -12.01985 -11.80964 -11.73046 -11.68059 -11.00412 -10.95614 -10.25854 -10.11813 -9.45762 -9.01038 -7.96784 -5.25101 -0.31313 0.46788 0.63274 0.76676 1.47013 1.48412 1.57000 2.09941 2.24411 2.55841 3.04956 3.36902 3.43381 3.53349 3.68016 3.86247 3.92853 4.02756 4.07739 4.18488 4.31625 4.36762 4.47852 4.51054 4.67111 4.74024 4.87486 4.90859 4.99059 5.02289 5.10077 5.28881 5.36304 5.45056 5.48716 6.26079 6.47939 7.17694 7.32967 8.07196 8.32472 9.26716 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.002440 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.289763 B =11473.602783 C =12312.814119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.141 3.859 15 N -0.709 5.709 16 C 0.560 3.440 17 O -0.563 6.563 18 C -0.166 4.166 19 C -0.215 4.215 20 S 0.297 5.703 21 C -0.188 4.188 22 C -0.174 4.174 23 C 0.327 3.673 24 F -0.214 7.214 25 F -0.214 7.214 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.194 0.806 37 H 0.216 0.784 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 3.617 31.618 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.030 3.970 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.213 1.213 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.017 3.983 15 N -0.362 5.362 16 C 0.346 3.654 17 O -0.443 6.443 18 C -0.183 4.183 19 C -0.354 4.354 20 S 0.565 5.435 21 C -0.324 4.324 22 C -0.186 4.186 23 C 0.272 3.728 24 F -0.195 7.195 25 F -0.195 7.195 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.210 0.790 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.211 0.789 37 H 0.233 0.767 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.751 4.031 32.101 32.470 hybrid contribution 0.696 -1.138 -2.314 2.670 sum -2.055 2.893 29.787 29.998 Atomic orbital electron populations 1.21723 0.93737 1.01953 1.01803 1.21327 0.97258 1.00053 0.92566 0.90162 1.20706 0.96486 0.94137 0.85661 1.42490 1.66852 1.27781 1.01276 1.19621 1.27975 1.05301 0.85071 0.90967 1.25539 1.01671 0.97859 1.01495 1.69799 1.45063 1.17787 1.29155 0.85147 0.78015 0.76854 0.79785 1.21341 1.21948 1.19691 1.21126 0.99471 0.94983 0.82760 1.45693 1.57604 1.28037 1.04829 1.18080 0.79148 0.84610 0.83565 1.90845 1.41010 1.25425 1.87005 1.19990 1.06864 0.98303 0.93119 1.26078 1.02796 0.99098 1.07412 1.82999 1.48544 1.20437 0.91559 1.25893 1.02909 0.98333 1.05221 1.20467 1.05743 0.99890 0.92541 1.20531 0.74854 0.80470 0.96960 1.92979 1.80102 1.55290 1.91153 1.92977 1.43133 1.96423 1.87014 0.90610 0.93587 0.93070 0.96357 0.96135 0.79010 0.93902 0.92294 0.91934 0.75169 0.78860 0.76742 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.94 71.98 0.64 -3.26 16 2 C -0.09 -2.88 2.46 -10.79 -0.03 -2.91 16 3 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.16 6.40 5.65 86.38 0.49 6.89 16 5 N -0.74 -37.84 5.33 -343.44 -1.83 -39.67 16 6 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 7 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 8 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 9 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 10 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 C 0.14 4.09 5.06 86.38 0.44 4.53 16 15 N -0.71 -17.41 5.25 -466.58 -2.45 -19.86 16 16 C 0.56 16.02 7.79 86.59 0.67 16.69 16 17 O -0.56 -20.91 12.98 -4.15 -0.05 -20.97 16 18 C -0.17 -3.49 5.98 -19.87 -0.12 -3.61 16 19 C -0.22 -2.77 10.38 67.30 0.70 -2.08 16 20 S 0.30 1.99 23.02 -56.49 -1.30 0.69 16 21 C -0.19 -1.62 10.86 66.64 0.72 -0.89 16 22 C -0.17 -3.12 5.44 -19.47 -0.11 -3.22 16 23 C 0.33 6.73 4.97 71.24 0.35 7.09 16 24 F -0.21 -6.05 15.82 44.97 0.71 -5.34 16 25 F -0.21 -6.10 15.80 44.97 0.71 -5.39 16 26 H 0.08 1.64 7.18 -2.38 -0.02 1.63 16 27 H 0.05 1.58 7.18 -2.39 -0.02 1.56 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.38 20.03 6.85 -92.71 -0.64 19.39 16 32 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.41 7.47 6.15 -92.71 -0.57 6.90 16 36 H 0.19 1.59 7.01 -2.91 -0.02 1.57 16 37 H 0.22 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.16 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -79.46 340.61 3.08 -76.38 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.09 Total: 22.05 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.07 Total: 2.20 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -4.00 Total: -118.27 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 1.42 Total: -10.72 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.30 Total: 0.69 kcal Total: -79.46 3.08 -76.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698747702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.406 kcal (2) G-P(sol) polarization free energy of solvation -79.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds