Wall clock time and date at job start Tue Mar 31 2020 11:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46872 * 2 1 4 4 C 1.52999 * 109.46799 * 119.99544 * 2 1 3 5 5 N 1.46498 * 109.47385 * 294.99948 * 4 2 1 6 6 C 1.36936 * 119.99596 * 179.72121 * 5 4 2 7 7 H 1.07996 * 120.00607 * 0.28179 * 6 5 4 8 8 C 1.38818 * 119.99642 * 180.27419 * 6 5 4 9 9 N 1.31613 * 120.00072 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99893 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47309 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47055 * 120.00083 * 10 8 6 13 13 H 1.48499 * 109.46992 * 240.00076 * 10 8 6 14 14 C 1.52997 * 109.46766 * 239.99768 * 2 1 3 15 15 N 1.46496 * 109.47463 * 65.00550 * 14 2 1 16 16 C 1.34774 * 120.00044 * 179.97438 * 15 14 2 17 17 O 1.21634 * 120.00407 * 0.02562 * 16 15 14 18 18 C 1.47198 * 119.99822 * 179.97438 * 16 15 14 19 19 C 1.36004 * 123.45941 * 354.11754 * 18 16 15 20 20 S 1.70452 * 110.81566 * 179.88857 * 19 18 16 21 21 C 1.75509 * 92.44301 * 0.31597 * 20 19 18 22 22 C 1.32772 * 110.57594 * 359.81976 * 21 20 19 23 23 C 1.50697 * 123.45850 * 180.02562 * 22 21 20 24 24 F 1.39903 * 109.47002 * 12.35891 * 23 22 21 25 25 F 1.39894 * 109.47253 * 132.36449 * 23 22 21 26 26 H 1.09003 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46921 * 300.00468 * 1 2 3 28 28 H 1.09000 * 109.46639 * 59.99976 * 1 2 3 29 29 H 1.08998 * 109.46663 * 174.99593 * 4 2 1 30 30 H 1.09008 * 109.46794 * 55.00431 * 4 2 1 31 31 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00389 * 179.97438 * 9 8 6 33 33 H 1.09008 * 109.46446 * 185.00005 * 14 2 1 34 34 H 1.09001 * 109.47379 * 304.99665 * 14 2 1 35 35 H 0.96999 * 120.00032 * 359.97438 * 15 14 2 36 36 H 1.07996 * 124.59402 * 359.97438 * 19 18 16 37 37 H 1.08000 * 124.71098 * 179.78379 * 21 20 19 38 38 H 1.08998 * 109.46824 * 252.36677 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0355 2.4424 6 6 1.9966 -0.4234 3.6858 7 1 2.5576 -1.3407 3.7868 8 6 1.6244 0.2906 4.8166 9 7 0.9404 1.4083 4.6936 10 14 2.0944 -0.3349 6.5129 11 1 2.8563 -1.6026 6.3794 12 1 2.9364 0.6783 7.1983 13 1 0.8647 -0.5774 7.3093 14 6 2.0400 -0.7213 -1.2492 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4133 -3.6659 17 8 2.6282 -1.4465 -3.7795 18 6 1.6067 0.3467 -4.8647 19 6 0.8036 1.4437 -4.8289 20 16 0.5644 2.0707 -6.3958 21 6 1.5603 0.8247 -7.1278 22 6 2.0329 0.0003 -6.2005 23 6 2.9231 -1.1756 -6.5099 24 9 3.3794 -1.0807 -7.8290 25 9 4.0163 -1.1753 -5.6370 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 3.1263 -0.7994 1.2056 30 1 1.6053 -1.7198 1.2952 31 1 1.1483 0.8592 2.3517 32 1 0.6800 1.9071 5.4838 33 1 3.1264 -0.7995 -1.2055 34 1 1.6054 -1.7199 -1.2951 35 1 1.1484 0.8590 -2.3518 36 1 0.3765 1.8618 -3.9294 37 1 1.7604 0.7399 -8.1857 38 1 2.3595 -2.1003 -6.3861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698747703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:52 Heat of formation + Delta-G solvation = -123.122822 kcal Electronic energy + Delta-G solvation = -23716.308656 eV Core-core repulsion = 19741.314265 eV Total energy + Delta-G solvation = -3974.994391 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.91526 -47.91397 -41.04550 -38.59299 -37.83480 -35.99407 -34.21062 -32.21578 -31.25144 -28.28763 -27.68112 -27.03791 -25.25873 -24.14633 -22.00971 -21.49957 -20.25497 -19.53080 -18.98649 -18.43326 -18.32067 -17.65559 -17.08115 -16.82351 -16.55137 -16.32026 -15.65825 -15.48270 -15.14991 -14.85684 -14.70377 -14.33858 -14.29452 -14.19892 -13.97853 -13.85014 -13.59547 -13.48806 -13.48340 -12.96258 -12.83113 -12.67822 -12.19000 -12.13253 -12.00094 -11.84806 -11.70836 -11.66260 -11.01306 -10.95562 -10.24382 -10.10302 -9.47287 -8.99667 -7.96173 -5.24146 -0.33090 0.43031 0.60406 0.76172 1.47758 1.48006 1.58269 2.08860 2.23536 2.56395 2.80396 3.37856 3.38084 3.56318 3.70825 3.84454 3.95659 3.96740 4.04664 4.08941 4.33039 4.36634 4.45253 4.54026 4.70696 4.77218 4.84594 4.93700 5.00914 5.04279 5.12882 5.30989 5.39146 5.47998 5.50270 6.26997 6.48908 7.16821 7.33903 8.08774 8.33339 9.27521 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.002347 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.465919 B =11927.966710 C =12791.165392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.245 4.245 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.292 1.292 14 C 0.140 3.860 15 N -0.707 5.707 16 C 0.566 3.434 17 O -0.565 6.565 18 C -0.161 4.161 19 C -0.208 4.208 20 S 0.299 5.701 21 C -0.203 4.203 22 C -0.163 4.163 23 C 0.334 3.666 24 F -0.206 7.206 25 F -0.203 7.203 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.018 0.982 30 H 0.022 0.978 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.412 0.588 36 H 0.201 0.799 37 H 0.196 0.804 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 2.195 -29.133 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.030 3.970 5 N -0.384 5.384 6 C -0.377 4.377 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.193 1.193 12 H -0.220 1.220 13 H -0.219 1.219 14 C 0.016 3.984 15 N -0.360 5.360 16 C 0.352 3.648 17 O -0.445 6.445 18 C -0.178 4.178 19 C -0.346 4.346 20 S 0.567 5.433 21 C -0.339 4.339 22 C -0.175 4.175 23 C 0.278 3.722 24 F -0.187 7.187 25 F -0.184 7.184 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.210 0.790 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.218 0.782 37 H 0.213 0.787 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.968 2.585 -29.668 30.044 hybrid contribution 0.922 -0.930 1.968 2.364 sum -3.046 1.654 -27.701 27.917 Atomic orbital electron populations 1.21731 0.93685 1.02028 1.01811 1.21335 0.97301 1.00045 0.92657 0.90307 1.20719 0.96501 0.94170 0.85659 1.42506 1.66900 1.27736 1.01303 1.19655 1.27724 1.05288 0.85037 0.90921 1.25527 1.01707 0.97937 1.01455 1.69797 1.45035 1.17967 1.29037 0.85097 0.77114 0.77601 0.80092 1.19304 1.21986 1.21893 1.21145 0.99565 0.95092 0.82579 1.45687 1.57375 1.28082 1.04806 1.17920 0.78918 0.84610 0.83349 1.90820 1.41016 1.25650 1.87044 1.19758 1.05564 0.99959 0.92495 1.26122 1.02227 0.99138 1.07156 1.83016 1.43212 1.24509 0.92586 1.25769 1.03662 0.99505 1.04955 1.20334 1.03929 1.00299 0.92981 1.19945 0.82364 0.98961 0.70966 1.92956 1.90708 1.97647 1.37393 1.93021 1.57755 1.97778 1.69855 0.92914 0.93811 0.90437 0.96373 0.96022 0.79032 0.93939 0.92240 0.91436 0.75087 0.78235 0.78686 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.94 71.98 0.64 -3.01 16 2 C -0.09 -2.75 2.46 -10.79 -0.03 -2.78 16 3 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.16 6.14 5.65 86.38 0.49 6.63 16 5 N -0.74 -37.08 5.33 -343.45 -1.83 -38.91 16 6 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 9 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 10 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 C 0.14 3.70 5.06 86.38 0.44 4.14 16 15 N -0.71 -15.37 5.25 -466.59 -2.45 -17.82 16 16 C 0.57 14.29 7.67 86.60 0.66 14.96 16 17 O -0.57 -18.49 13.58 -4.14 -0.06 -18.55 16 18 C -0.16 -3.07 5.95 -19.87 -0.12 -3.19 16 19 C -0.21 -2.41 10.37 67.30 0.70 -1.71 16 20 S 0.30 2.25 23.02 -56.49 -1.30 0.95 16 21 C -0.20 -2.44 10.46 66.64 0.70 -1.74 16 22 C -0.16 -3.03 5.76 -19.47 -0.11 -3.14 16 23 C 0.33 7.18 4.88 71.23 0.35 7.53 16 24 F -0.21 -4.17 16.52 44.97 0.74 -3.43 16 25 F -0.20 -6.00 14.76 44.97 0.66 -5.33 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.44 7.18 -2.39 -0.02 1.42 16 28 H 0.08 1.51 7.18 -2.39 -0.02 1.49 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.38 19.66 6.85 -92.71 -0.63 19.03 16 32 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.41 6.45 6.18 -92.71 -0.57 5.87 16 36 H 0.20 1.23 7.05 -2.91 -0.02 1.21 16 37 H 0.20 1.56 7.72 -2.91 -0.02 1.53 16 38 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -73.03 340.38 3.01 -70.02 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.09 Total: 22.05 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 5.03 Total: 1.05 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.00 Total: -114.94 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 9 Polarization: -10.17 SS G_CDS: 1.41 Total: -8.76 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.30 Total: 0.95 kcal Total: -73.03 3.01 -70.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698747703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.101 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds