Wall clock time and date at job start Tue Mar 31 2020 11:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 C 1.52997 * 109.46763 * 239.99813 * 2 1 3 5 5 N 1.46499 * 109.47484 * 65.00226 * 4 2 1 6 6 C 1.36936 * 120.00319 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99630 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00297 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00209 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99695 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47224 * 89.99894 * 10 8 6 12 12 H 1.48504 * 109.46690 * 210.00109 * 10 8 6 13 13 H 1.48496 * 109.47184 * 329.99447 * 10 8 6 14 14 C 1.53001 * 109.46806 * 119.99739 * 2 1 3 15 15 N 1.46493 * 109.47084 * 294.99611 * 14 2 1 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 2 17 17 O 1.21633 * 119.99699 * 359.72398 * 16 15 14 18 18 C 1.47188 * 120.00042 * 179.72794 * 16 15 14 19 19 C 1.44421 * 123.45802 * 359.70422 * 18 16 15 20 20 C 1.32780 * 113.08074 * 179.80967 * 19 18 16 21 21 S 1.75507 * 110.57307 * 0.44289 * 20 19 18 22 22 C 1.36004 * 123.46034 * 179.97438 * 18 16 15 23 23 C 1.50702 * 124.59337 * 359.94752 * 22 18 16 24 24 F 1.39904 * 109.46649 * 299.99607 * 23 22 18 25 25 F 1.39898 * 109.47247 * 59.99276 * 23 22 18 26 26 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47177 * 300.00294 * 1 2 3 28 28 H 1.08996 * 109.46781 * 60.00115 * 1 2 3 29 29 H 1.09007 * 109.47118 * 185.00054 * 4 2 1 30 30 H 1.09002 * 109.47058 * 304.99684 * 4 2 1 31 31 H 0.97000 * 119.99692 * 359.97438 * 5 4 2 32 32 H 0.96999 * 120.00448 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.46593 * 174.99868 * 14 2 1 34 34 H 1.09006 * 109.47216 * 55.00327 * 14 2 1 35 35 H 0.97000 * 120.00740 * 359.72857 * 15 14 2 36 36 H 1.07999 * 123.46196 * 0.02562 * 19 18 16 37 37 H 1.07999 * 124.71183 * 180.17817 * 20 19 18 38 38 H 1.08997 * 109.47167 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0019 -0.4204 -3.6855 7 1 2.5629 -1.3378 -3.7864 8 6 1.6343 0.2961 -4.8161 9 7 1.9697 -0.1421 -6.0109 10 14 0.6634 1.8825 -4.6416 11 1 1.6022 3.0271 -4.5252 12 1 -0.1989 2.0689 -5.8362 13 1 -0.1850 1.8123 -3.4249 14 6 2.0400 -0.7212 1.2493 15 7 1.6525 0.0355 2.4423 16 6 1.9965 -0.4129 3.6660 17 8 2.6243 -1.4485 3.7798 18 6 1.6123 0.3504 4.8644 19 6 0.8732 1.5902 4.8156 20 6 0.6343 2.1014 6.0176 21 16 1.3223 1.0816 7.2693 22 6 1.9215 -0.0366 6.1310 23 6 2.6896 -1.2851 6.4807 24 9 1.9977 -2.4057 6.0086 25 9 3.9559 -1.2350 5.8882 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7996 -1.2056 30 1 1.6053 -1.7199 -1.2950 31 1 1.1483 0.8590 -2.3518 32 1 1.7125 0.3584 -6.8010 33 1 3.1264 -0.7994 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 1.1521 0.8615 2.3516 36 1 0.5453 2.0523 3.8962 37 1 0.0955 3.0195 6.1994 38 1 2.7977 -1.3539 7.5631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698773296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:45 Heat of formation + Delta-G solvation = -94.074552 kcal Electronic energy + Delta-G solvation = -23976.982914 eV Core-core repulsion = 20003.248151 eV Total energy + Delta-G solvation = -3973.734763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.01388 -47.02070 -40.13322 -37.61312 -36.78300 -34.53740 -32.52922 -31.50064 -30.57450 -27.77613 -26.45948 -25.43480 -23.65653 -22.24917 -21.64065 -20.39192 -19.59921 -18.88064 -17.79361 -17.31019 -17.28304 -16.66897 -16.12708 -15.65542 -15.44178 -14.98915 -14.53426 -14.40866 -13.98080 -13.82672 -13.67545 -13.36723 -13.30488 -13.25071 -13.03743 -12.63964 -12.54791 -12.44780 -12.21322 -11.67763 -11.50452 -11.45758 -11.05348 -10.76857 -10.63257 -10.61589 -10.17663 -10.01931 -9.70145 -9.58465 -9.18870 -8.93580 -8.90420 -7.23726 -5.76862 -3.12571 0.06038 0.79595 1.22574 1.48154 3.04521 3.10916 3.34714 3.37225 3.38528 3.43518 3.77611 4.25455 4.36035 4.57927 4.69249 4.76253 4.82002 4.88653 5.08557 5.21266 5.25505 5.36025 5.53819 5.59686 5.65412 5.73129 5.87253 5.90016 6.07120 6.22480 6.37042 6.44586 6.65708 6.74740 7.35469 7.99639 8.07341 8.42037 9.20868 9.92865 10.12608 11.41671 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002605 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.179486 B =10745.617494 C =11568.699357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.717 5.717 16 C 0.564 3.436 17 O -0.514 6.514 18 C -0.106 4.106 19 C -0.114 4.114 20 C -0.213 4.213 21 S 0.226 5.774 22 C -0.261 4.261 23 C 0.357 3.643 24 F -0.181 7.181 25 F -0.181 7.181 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 5.494 32.649 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.005 3.995 15 N -0.369 5.369 16 C 0.348 3.652 17 O -0.391 6.391 18 C -0.126 4.126 19 C -0.143 4.143 20 C -0.349 4.349 21 S 0.493 5.507 22 C -0.382 4.382 23 C 0.302 3.698 24 F -0.163 7.163 25 F -0.162 7.162 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.257 4.651 34.081 34.551 hybrid contribution -1.043 1.558 -1.871 2.648 sum -4.300 6.209 32.210 33.084 Atomic orbital electron populations 1.21822 0.94762 1.02357 1.01174 1.21612 0.96630 1.00550 0.94589 0.90585 1.20551 0.97270 0.94242 0.84223 1.42682 1.67652 1.27322 1.02363 1.19071 1.29313 1.07187 0.81747 0.89154 1.24676 1.00811 0.98655 0.95100 1.69698 1.51336 1.40271 0.96929 0.86540 0.80233 0.84853 0.76818 1.21109 1.21730 1.20403 1.21434 1.00496 0.95319 0.82296 1.45862 1.57696 1.27664 1.05638 1.17525 0.80127 0.84959 0.82624 1.90892 1.38837 1.23060 1.86281 1.20394 1.02139 0.96743 0.93299 1.21301 0.99549 0.94305 0.99164 1.25624 1.07806 1.05489 0.95955 1.82930 1.48329 1.12110 1.07316 1.25219 1.09321 1.04492 0.99166 1.19364 0.75726 0.79736 0.95022 1.93070 1.79396 1.52932 1.90856 1.93071 1.40156 1.96314 1.86689 0.92296 0.93747 0.91749 0.95148 0.95091 0.80659 0.93052 0.90897 0.90880 0.76668 0.82644 0.80534 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.94 37.16 0.33 -1.61 16 2 C -0.11 -1.64 2.46 -90.62 -0.22 -1.86 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.75 -17.72 5.13 -59.91 -0.31 -18.03 16 6 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 8 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 10 Si 0.89 21.94 27.74 -169.99 -4.71 17.22 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.72 -8.30 5.26 -61.46 -0.32 -8.63 16 16 C 0.56 7.57 7.75 -12.62 -0.10 7.47 16 17 O -0.51 -8.77 12.76 5.25 0.07 -8.70 16 18 C -0.11 -1.12 5.98 -104.63 -0.63 -1.75 16 19 C -0.11 -0.81 9.91 -39.02 -0.39 -1.20 16 20 C -0.21 -1.13 11.12 28.86 0.32 -0.81 16 21 S 0.23 1.26 22.95 -107.50 -2.47 -1.21 16 22 C -0.26 -2.48 5.78 -35.11 -0.20 -2.69 16 23 C 0.36 3.69 5.03 36.01 0.18 3.87 16 24 F -0.18 -2.42 15.72 2.25 0.04 -2.38 16 25 F -0.18 -2.42 15.71 2.25 0.04 -2.39 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.47 7.19 -51.93 -0.37 0.10 16 28 H 0.06 0.99 7.18 -51.93 -0.37 0.62 16 29 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.36 8.15 4.71 -40.82 -0.19 7.96 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 3.54 6.21 -40.82 -0.25 3.29 16 36 H 0.16 0.78 7.10 -52.49 -0.37 0.41 16 37 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.11 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -35.82 337.40 -7.35 -43.17 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.54 Total: 5.49 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.00 Total: -0.87 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.14 Total: -55.41 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.07 Total: -4.77 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.47 Total: -1.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.82 -7.35 -43.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698773296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.909 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds