Wall clock time and date at job start Tue Mar 31 2020 11:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 C 1.52997 * 109.46763 * 239.99813 * 2 1 3 5 5 N 1.46499 * 109.47484 * 65.00226 * 4 2 1 6 6 C 1.36936 * 120.00319 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99630 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00297 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00209 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99695 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47224 * 89.99894 * 10 8 6 12 12 H 1.48504 * 109.46690 * 210.00109 * 10 8 6 13 13 H 1.48496 * 109.47184 * 329.99447 * 10 8 6 14 14 C 1.53001 * 109.46806 * 119.99739 * 2 1 3 15 15 N 1.46493 * 109.47084 * 294.99611 * 14 2 1 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 2 17 17 O 1.21633 * 119.99699 * 359.72398 * 16 15 14 18 18 C 1.47188 * 120.00042 * 179.72794 * 16 15 14 19 19 C 1.44421 * 123.45802 * 359.70422 * 18 16 15 20 20 C 1.32780 * 113.08074 * 179.80967 * 19 18 16 21 21 S 1.75507 * 110.57307 * 0.44289 * 20 19 18 22 22 C 1.36004 * 123.46034 * 179.97438 * 18 16 15 23 23 C 1.50702 * 124.59337 * 359.94752 * 22 18 16 24 24 F 1.39904 * 109.46649 * 299.99607 * 23 22 18 25 25 F 1.39898 * 109.47247 * 59.99276 * 23 22 18 26 26 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47177 * 300.00294 * 1 2 3 28 28 H 1.08996 * 109.46781 * 60.00115 * 1 2 3 29 29 H 1.09007 * 109.47118 * 185.00054 * 4 2 1 30 30 H 1.09002 * 109.47058 * 304.99684 * 4 2 1 31 31 H 0.97000 * 119.99692 * 359.97438 * 5 4 2 32 32 H 0.96999 * 120.00448 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.46593 * 174.99868 * 14 2 1 34 34 H 1.09006 * 109.47216 * 55.00327 * 14 2 1 35 35 H 0.97000 * 120.00740 * 359.72857 * 15 14 2 36 36 H 1.07999 * 123.46196 * 0.02562 * 19 18 16 37 37 H 1.07999 * 124.71183 * 180.17817 * 20 19 18 38 38 H 1.08997 * 109.47167 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0019 -0.4204 -3.6855 7 1 2.5629 -1.3378 -3.7864 8 6 1.6343 0.2961 -4.8161 9 7 1.9697 -0.1421 -6.0109 10 14 0.6634 1.8825 -4.6416 11 1 1.6022 3.0271 -4.5252 12 1 -0.1989 2.0689 -5.8362 13 1 -0.1850 1.8123 -3.4249 14 6 2.0400 -0.7212 1.2493 15 7 1.6525 0.0355 2.4423 16 6 1.9965 -0.4129 3.6660 17 8 2.6243 -1.4485 3.7798 18 6 1.6123 0.3504 4.8644 19 6 0.8732 1.5902 4.8156 20 6 0.6343 2.1014 6.0176 21 16 1.3223 1.0816 7.2693 22 6 1.9215 -0.0366 6.1310 23 6 2.6896 -1.2851 6.4807 24 9 1.9977 -2.4057 6.0086 25 9 3.9559 -1.2350 5.8882 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7996 -1.2056 30 1 1.6053 -1.7199 -1.2950 31 1 1.1483 0.8590 -2.3518 32 1 1.7125 0.3584 -6.8010 33 1 3.1264 -0.7994 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 1.1521 0.8615 2.3516 36 1 0.5453 2.0523 3.8962 37 1 0.0955 3.0195 6.1994 38 1 2.7977 -1.3539 7.5631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698773296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:45 Heat of formation + Delta-G solvation = -119.501170 kcal Electronic energy + Delta-G solvation = -23978.085495 eV Core-core repulsion = 20003.248151 eV Total energy + Delta-G solvation = -3974.837344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.87275 -47.91492 -41.06201 -38.59231 -37.83194 -36.09146 -34.18663 -32.43237 -32.07920 -28.66527 -27.79516 -26.70106 -24.64000 -23.66223 -22.62176 -21.60954 -20.62055 -19.61783 -19.47357 -18.32341 -18.17458 -17.47292 -17.05250 -16.73440 -16.57365 -16.20567 -15.81886 -15.59710 -15.30254 -14.95469 -14.77932 -14.61229 -14.27914 -14.25906 -14.00944 -13.75724 -13.72115 -13.57675 -13.32017 -13.20116 -12.87332 -12.29522 -12.19351 -12.13991 -12.09075 -12.02214 -11.76851 -11.70737 -11.08799 -10.99167 -10.26441 -10.13238 -9.46302 -9.31337 -8.03147 -5.37752 -0.56216 0.29953 0.76274 0.91381 1.37062 1.42833 1.50047 2.11444 2.22311 2.48808 2.75800 3.14337 3.27863 3.52345 3.63605 3.68108 3.90997 3.96705 3.97769 4.08154 4.18574 4.31346 4.49621 4.65774 4.69675 4.79899 4.90963 4.94654 4.99633 5.07903 5.11497 5.24991 5.33514 5.44098 5.74603 6.20272 6.46447 7.07135 7.14794 7.81438 8.03195 9.18600 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002605 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.179486 B =10745.617494 C =11568.699357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.159 3.841 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.067 4.067 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.276 1.276 12 H -0.296 1.296 13 H -0.245 1.245 14 C 0.138 3.862 15 N -0.704 5.704 16 C 0.557 3.443 17 O -0.563 6.563 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.204 4.204 21 S 0.296 5.704 22 C -0.289 4.289 23 C 0.340 3.660 24 F -0.205 7.205 25 F -0.205 7.205 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.369 0.631 32 H 0.259 0.741 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.414 0.586 36 H 0.176 0.824 37 H 0.212 0.788 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 8.798 35.827 37.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.109 0.891 4 C 0.033 3.967 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.069 0.931 8 C -0.258 4.258 9 N -0.636 5.636 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.169 1.169 14 C 0.014 3.986 15 N -0.357 5.357 16 C 0.343 3.657 17 O -0.443 6.443 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.340 4.340 21 S 0.564 5.436 22 C -0.410 4.410 23 C 0.285 3.715 24 F -0.186 7.186 25 F -0.187 7.187 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.252 0.748 36 H 0.193 0.807 37 H 0.229 0.771 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.368 7.985 37.322 38.543 hybrid contribution -0.335 0.456 -2.742 2.800 sum -5.703 8.441 34.580 36.050 Atomic orbital electron populations 1.21806 0.93512 1.02325 1.02206 1.21389 0.97456 1.00482 0.92240 0.89133 1.20688 0.96924 0.94190 0.84945 1.42603 1.67606 1.27893 1.01818 1.19031 1.28136 1.05778 0.84073 0.93053 1.25603 1.02646 1.03123 0.94476 1.69902 1.53369 1.42374 0.98001 0.85335 0.78793 0.79411 0.77794 1.20210 1.22287 1.16874 1.21139 0.99596 0.95066 0.82822 1.45662 1.57455 1.27912 1.04633 1.18087 0.79231 0.84614 0.83757 1.90863 1.41086 1.25282 1.87021 1.20385 1.04538 0.98437 0.92230 1.21413 0.99758 0.93209 1.00902 1.26117 1.06538 1.06105 0.95214 1.82706 1.45875 1.09646 1.05347 1.25454 1.09837 1.05163 1.00501 1.20093 0.74724 0.79648 0.97007 1.93009 1.79842 1.54412 1.91368 1.93009 1.41864 1.96422 1.87369 0.92978 0.90154 0.93151 0.95908 0.95872 0.79688 0.93272 0.92230 0.91967 0.74791 0.80688 0.77083 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.94 71.98 0.64 -2.80 16 2 C -0.10 -2.61 2.46 -10.79 -0.03 -2.64 16 3 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.16 6.06 5.65 86.38 0.49 6.55 16 5 N -0.75 -34.96 5.13 -343.45 -1.76 -36.72 16 6 C -0.24 -13.91 10.47 84.03 0.88 -13.03 16 7 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 8 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 9 N -0.99 -64.06 13.97 21.65 0.30 -63.76 16 10 Si 0.96 44.77 27.74 68.60 1.90 46.68 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.24 -9.96 6.52 99.48 0.65 -9.31 16 14 C 0.14 3.65 5.06 86.38 0.44 4.08 16 15 N -0.70 -15.41 5.26 -466.58 -2.45 -17.86 16 16 C 0.56 14.86 7.75 86.59 0.67 15.53 16 17 O -0.56 -19.95 12.76 -4.13 -0.05 -20.00 16 18 C -0.14 -2.65 5.98 -19.87 -0.12 -2.77 16 19 C -0.13 -1.36 9.91 22.67 0.22 -1.13 16 20 C -0.20 -1.24 11.12 66.64 0.74 -0.50 16 21 S 0.30 2.21 22.95 -56.49 -1.30 0.91 16 22 C -0.29 -5.03 5.78 25.17 0.15 -4.89 16 23 C 0.34 6.90 5.03 71.24 0.36 7.26 16 24 F -0.21 -5.62 15.72 44.97 0.71 -4.91 16 25 F -0.21 -5.67 15.71 44.97 0.71 -4.96 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.38 7.19 -2.39 -0.02 1.37 16 28 H 0.05 1.39 7.18 -2.39 -0.02 1.38 16 29 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.37 15.83 4.71 -92.71 -0.44 15.39 16 32 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.41 6.19 6.21 -92.71 -0.58 5.62 16 36 H 0.18 1.03 7.10 -2.91 -0.02 1.01 16 37 H 0.21 -0.22 8.06 -2.91 -0.02 -0.24 16 38 H 0.16 1.55 8.11 -2.39 -0.02 1.53 16 Total: -1.00 -82.59 337.40 3.00 -79.59 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.04 Total: 18.92 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 4.91 Total: 2.12 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -3.91 Total: -118.34 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.05 Total: -20.00 kcal Atomic # 9 Polarization: -11.29 SS G_CDS: 1.41 Total: -9.87 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.68 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.30 Total: 0.91 kcal Total: -82.59 3.00 -79.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698773296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.911 kcal (2) G-P(sol) polarization free energy of solvation -82.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds