Wall clock time and date at job start Tue Mar 31 2020 11:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47622 * 2 1 4 4 C 1.53004 * 109.46996 * 120.00077 * 2 1 3 5 5 N 1.46501 * 109.46873 * 294.99517 * 4 2 1 6 6 C 1.36934 * 120.00126 * 179.72456 * 5 4 2 7 7 H 1.08008 * 119.99939 * 0.27698 * 6 5 4 8 8 C 1.38813 * 120.00192 * 180.27387 * 6 5 4 9 9 N 1.31618 * 120.00059 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99918 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47428 * 89.99673 * 10 8 6 12 12 H 1.48503 * 109.46674 * 209.99570 * 10 8 6 13 13 H 1.48497 * 109.46747 * 329.99319 * 10 8 6 14 14 C 1.53000 * 109.46990 * 239.99332 * 2 1 3 15 15 N 1.46508 * 109.46724 * 65.00291 * 14 2 1 16 16 C 1.34776 * 119.99483 * 179.97438 * 15 14 2 17 17 O 1.21635 * 120.00517 * 0.02562 * 16 15 14 18 18 C 1.47192 * 119.99681 * 180.02562 * 16 15 14 19 19 C 1.44428 * 123.46011 * 354.14090 * 18 16 15 20 20 C 1.32775 * 113.08421 * 179.80707 * 19 18 16 21 21 S 1.75500 * 110.57297 * 0.44326 * 20 19 18 22 22 C 1.36011 * 123.46196 * 174.43600 * 18 16 15 23 23 C 1.50693 * 124.59014 * 359.94213 * 22 18 16 24 24 F 1.39907 * 109.47326 * 303.94738 * 23 22 18 25 25 F 1.39904 * 109.47021 * 63.94815 * 23 22 18 26 26 H 1.08995 * 109.47645 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46976 * 300.00669 * 1 2 3 28 28 H 1.09003 * 109.46965 * 60.00117 * 1 2 3 29 29 H 1.09001 * 109.47203 * 174.99727 * 4 2 1 30 30 H 1.08998 * 109.47383 * 54.99396 * 4 2 1 31 31 H 0.97006 * 119.99951 * 359.97438 * 5 4 2 32 32 H 0.96999 * 120.00623 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47026 * 185.00115 * 14 2 1 34 34 H 1.08995 * 109.47179 * 305.00828 * 14 2 1 35 35 H 0.96998 * 119.99851 * 359.97438 * 15 14 2 36 36 H 1.08001 * 123.45965 * 0.02562 * 19 18 16 37 37 H 1.08001 * 124.70869 * 180.17804 * 20 19 18 38 38 H 1.09003 * 109.47265 * 183.94544 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4424 6 6 1.9966 -0.4233 3.6858 7 1 2.5576 -1.3407 3.7868 8 6 1.6245 0.2907 4.8166 9 7 1.9549 -0.1505 6.0118 10 14 0.6537 1.8770 4.6420 11 1 -0.7996 1.5726 4.6598 12 1 0.9830 2.7854 5.7697 13 1 1.0061 2.5341 3.3578 14 6 2.0400 -0.7214 -1.2492 15 7 1.6524 0.0352 -2.4424 16 6 1.9964 -0.4134 -3.6659 17 8 2.6282 -1.4465 -3.7795 18 6 1.6075 0.3470 -4.8647 19 6 0.7559 1.5130 -4.8266 20 6 0.5414 2.0403 -6.0261 21 16 1.3715 1.1142 -7.2644 22 6 2.0084 0.0205 -6.1226 23 6 2.8962 -1.1492 -6.4610 24 9 4.0891 -1.0544 -5.7361 25 9 2.2430 -2.3414 -6.1304 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7996 1.2056 30 1 1.6053 -1.7198 1.2953 31 1 1.1490 0.8596 2.3517 32 1 1.6952 0.3485 6.8020 33 1 3.1263 -0.7996 -1.2055 34 1 1.6053 -1.7199 -1.2950 35 1 1.1482 0.8589 -2.3518 36 1 0.3394 1.9166 -3.9156 37 1 -0.0636 2.9150 -6.2141 38 1 3.1179 -1.1403 -7.5282 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698773299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:48 Heat of formation + Delta-G solvation = -94.019060 kcal Electronic energy + Delta-G solvation = -23975.958173 eV Core-core repulsion = 20002.225816 eV Total energy + Delta-G solvation = -3973.732357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.01598 -47.02331 -40.13220 -37.61357 -36.78342 -34.53625 -32.52936 -31.50280 -30.57473 -27.77809 -26.46321 -25.43464 -23.65750 -22.24920 -21.63834 -20.39514 -19.59894 -18.88176 -17.79436 -17.31372 -17.28483 -16.66741 -16.12761 -15.63118 -15.46681 -15.00203 -14.52383 -14.40988 -13.98391 -13.82440 -13.67680 -13.36977 -13.30990 -13.23244 -13.04185 -12.64514 -12.57667 -12.45081 -12.19568 -11.67732 -11.50532 -11.45890 -11.06170 -10.78908 -10.63184 -10.61503 -10.16670 -10.02139 -9.70103 -9.58574 -9.18815 -8.93630 -8.90402 -7.23717 -5.76860 -3.12544 0.06139 0.79598 1.22601 1.48345 3.03947 3.10836 3.35029 3.36986 3.38430 3.43472 3.77556 4.25487 4.35943 4.57940 4.69317 4.75945 4.81957 4.88488 5.08461 5.20970 5.25390 5.36054 5.53532 5.59719 5.65265 5.72451 5.87118 5.89971 6.06504 6.22103 6.36784 6.43162 6.65707 6.74708 7.35485 7.99608 8.07306 8.42037 9.20853 9.92874 10.12622 11.41677 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.002606 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.098599 B =10740.783182 C =11561.960877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.717 5.717 16 C 0.564 3.436 17 O -0.514 6.514 18 C -0.106 4.106 19 C -0.114 4.114 20 C -0.213 4.213 21 S 0.226 5.774 22 C -0.261 4.261 23 C 0.357 3.643 24 F -0.181 7.181 25 F -0.182 7.182 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 5.612 -32.630 33.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.005 3.995 15 N -0.369 5.369 16 C 0.348 3.652 17 O -0.391 6.391 18 C -0.126 4.126 19 C -0.143 4.143 20 C -0.349 4.349 21 S 0.493 5.507 22 C -0.382 4.382 23 C 0.301 3.699 24 F -0.162 7.162 25 F -0.163 7.163 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.002 4.818 -34.057 34.526 hybrid contribution -1.122 1.505 1.861 2.643 sum -4.124 6.323 -32.195 33.069 Atomic orbital electron populations 1.21817 0.94771 1.02362 1.01122 1.21612 0.96619 1.00580 0.94596 0.90575 1.20551 0.97268 0.94242 0.84222 1.42685 1.68048 1.26951 1.02340 1.19073 1.29485 1.07073 0.81687 0.89151 1.24677 1.00840 0.98623 0.95098 1.69699 1.51353 1.40283 0.96898 0.86543 0.80433 0.84648 0.76878 1.21078 1.21711 1.20416 1.21435 1.00527 0.95290 0.82291 1.45864 1.57548 1.27809 1.05638 1.17523 0.80143 0.84935 0.82623 1.90893 1.38686 1.23198 1.86295 1.20398 1.01008 0.97729 0.93431 1.21301 0.99027 0.94839 0.99155 1.25622 1.07248 1.05884 0.96120 1.82929 1.42423 1.17543 1.07790 1.25216 1.08467 1.05270 0.99261 1.19368 0.77255 0.78833 0.94411 1.93074 1.46279 1.96004 1.80853 1.93069 1.81480 1.47321 1.94416 0.92253 0.91829 0.93735 0.95196 0.95036 0.80658 0.93051 0.90883 0.90888 0.76661 0.82642 0.80533 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.94 37.16 0.33 -1.58 16 2 C -0.11 -1.64 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.75 -17.73 5.13 -59.90 -0.31 -18.04 16 6 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 7 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 10 Si 0.88 21.95 27.74 -169.99 -4.71 17.23 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.72 -8.31 5.26 -61.45 -0.32 -8.63 16 16 C 0.56 7.57 7.70 -12.62 -0.10 7.47 16 17 O -0.51 -8.77 12.83 5.25 0.07 -8.70 16 18 C -0.11 -1.12 5.97 -104.63 -0.62 -1.74 16 19 C -0.11 -0.81 9.90 -39.02 -0.39 -1.20 16 20 C -0.21 -1.13 11.12 28.86 0.32 -0.81 16 21 S 0.23 1.26 22.95 -107.50 -2.47 -1.21 16 22 C -0.26 -2.49 5.79 -35.11 -0.20 -2.69 16 23 C 0.36 3.69 5.03 36.00 0.18 3.87 16 24 F -0.18 -2.43 15.52 2.25 0.03 -2.40 16 25 F -0.18 -2.41 15.89 2.25 0.04 -2.37 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.95 7.18 -51.92 -0.37 0.58 16 28 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.36 8.16 4.71 -40.82 -0.19 7.97 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.40 3.55 6.23 -40.82 -0.25 3.29 16 36 H 0.16 0.78 7.13 -52.49 -0.37 0.40 16 37 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.11 0.65 8.12 -51.93 -0.42 0.23 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -35.84 337.46 -7.35 -43.19 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.54 Total: 5.44 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.00 Total: -0.84 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.14 Total: -55.43 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.07 Total: -4.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.47 Total: -1.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.84 -7.35 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698773299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.827 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds