Wall clock time and date at job start Tue Mar 31 2020 11:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47622 * 2 1 4 4 C 1.53004 * 109.46996 * 120.00077 * 2 1 3 5 5 N 1.46501 * 109.46873 * 294.99517 * 4 2 1 6 6 C 1.36934 * 120.00126 * 179.72456 * 5 4 2 7 7 H 1.08008 * 119.99939 * 0.27698 * 6 5 4 8 8 C 1.38813 * 120.00192 * 180.27387 * 6 5 4 9 9 N 1.31618 * 120.00059 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99918 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47428 * 89.99673 * 10 8 6 12 12 H 1.48503 * 109.46674 * 209.99570 * 10 8 6 13 13 H 1.48497 * 109.46747 * 329.99319 * 10 8 6 14 14 C 1.53000 * 109.46990 * 239.99332 * 2 1 3 15 15 N 1.46508 * 109.46724 * 65.00291 * 14 2 1 16 16 C 1.34776 * 119.99483 * 179.97438 * 15 14 2 17 17 O 1.21635 * 120.00517 * 0.02562 * 16 15 14 18 18 C 1.47192 * 119.99681 * 180.02562 * 16 15 14 19 19 C 1.44428 * 123.46011 * 354.14090 * 18 16 15 20 20 C 1.32775 * 113.08421 * 179.80707 * 19 18 16 21 21 S 1.75500 * 110.57297 * 0.44326 * 20 19 18 22 22 C 1.36011 * 123.46196 * 174.43600 * 18 16 15 23 23 C 1.50693 * 124.59014 * 359.94213 * 22 18 16 24 24 F 1.39907 * 109.47326 * 303.94738 * 23 22 18 25 25 F 1.39904 * 109.47021 * 63.94815 * 23 22 18 26 26 H 1.08995 * 109.47645 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46976 * 300.00669 * 1 2 3 28 28 H 1.09003 * 109.46965 * 60.00117 * 1 2 3 29 29 H 1.09001 * 109.47203 * 174.99727 * 4 2 1 30 30 H 1.08998 * 109.47383 * 54.99396 * 4 2 1 31 31 H 0.97006 * 119.99951 * 359.97438 * 5 4 2 32 32 H 0.96999 * 120.00623 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47026 * 185.00115 * 14 2 1 34 34 H 1.08995 * 109.47179 * 305.00828 * 14 2 1 35 35 H 0.96998 * 119.99851 * 359.97438 * 15 14 2 36 36 H 1.08001 * 123.45965 * 0.02562 * 19 18 16 37 37 H 1.08001 * 124.70869 * 180.17804 * 20 19 18 38 38 H 1.09003 * 109.47265 * 183.94544 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4424 6 6 1.9966 -0.4233 3.6858 7 1 2.5576 -1.3407 3.7868 8 6 1.6245 0.2907 4.8166 9 7 1.9549 -0.1505 6.0118 10 14 0.6537 1.8770 4.6420 11 1 -0.7996 1.5726 4.6598 12 1 0.9830 2.7854 5.7697 13 1 1.0061 2.5341 3.3578 14 6 2.0400 -0.7214 -1.2492 15 7 1.6524 0.0352 -2.4424 16 6 1.9964 -0.4134 -3.6659 17 8 2.6282 -1.4465 -3.7795 18 6 1.6075 0.3470 -4.8647 19 6 0.7559 1.5130 -4.8266 20 6 0.5414 2.0403 -6.0261 21 16 1.3715 1.1142 -7.2644 22 6 2.0084 0.0205 -6.1226 23 6 2.8962 -1.1492 -6.4610 24 9 4.0891 -1.0544 -5.7361 25 9 2.2430 -2.3414 -6.1304 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7996 1.2056 30 1 1.6053 -1.7198 1.2953 31 1 1.1490 0.8596 2.3517 32 1 1.6952 0.3485 6.8020 33 1 3.1263 -0.7996 -1.2055 34 1 1.6053 -1.7199 -1.2950 35 1 1.1482 0.8589 -2.3518 36 1 0.3394 1.9166 -3.9156 37 1 -0.0636 2.9150 -6.2141 38 1 3.1179 -1.1403 -7.5282 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698773299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:47 Heat of formation + Delta-G solvation = -119.467124 kcal Electronic energy + Delta-G solvation = -23977.061684 eV Core-core repulsion = 20002.225816 eV Total energy + Delta-G solvation = -3974.835868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.87542 -47.91808 -41.06149 -38.59173 -37.83190 -36.09124 -34.18588 -32.43187 -32.08175 -28.66474 -27.79181 -26.70193 -24.63970 -23.66394 -22.61943 -21.61278 -20.62004 -19.61619 -19.47320 -18.33067 -18.17812 -17.47112 -17.05499 -16.71964 -16.58388 -16.22057 -15.80784 -15.60172 -15.29829 -14.94118 -14.78398 -14.61176 -14.29720 -14.26767 -14.00341 -13.76972 -13.70207 -13.57190 -13.32371 -13.19909 -12.86820 -12.29496 -12.27555 -12.10793 -12.06803 -12.00168 -11.77595 -11.70757 -11.09047 -10.99088 -10.26479 -10.13272 -9.46314 -9.31405 -8.03209 -5.37788 -0.56110 0.29921 0.76233 0.91584 1.36977 1.42639 1.49894 2.11029 2.22049 2.48697 2.75648 3.14190 3.27810 3.52362 3.63531 3.67935 3.91042 3.96360 3.97896 4.08099 4.18483 4.31364 4.49636 4.65791 4.69725 4.80065 4.91147 4.94651 4.99893 5.07948 5.11546 5.24983 5.33480 5.44334 5.74514 6.20225 6.46400 7.07042 7.14703 7.81381 8.03099 9.18548 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.002606 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.098599 B =10740.783182 C =11561.960877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.159 3.841 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.067 4.067 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.246 1.246 14 C 0.138 3.862 15 N -0.704 5.704 16 C 0.557 3.443 17 O -0.563 6.563 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.204 4.204 21 S 0.296 5.704 22 C -0.289 4.289 23 C 0.340 3.660 24 F -0.205 7.205 25 F -0.205 7.205 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.022 0.978 30 H 0.024 0.976 31 H 0.369 0.631 32 H 0.259 0.741 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.414 0.586 36 H 0.176 0.824 37 H 0.212 0.788 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 8.922 -35.796 37.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.107 0.893 4 C 0.033 3.967 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.070 0.930 8 C -0.258 4.258 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.170 1.170 14 C 0.014 3.986 15 N -0.357 5.357 16 C 0.343 3.657 17 O -0.443 6.443 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.340 4.340 21 S 0.564 5.436 22 C -0.410 4.410 23 C 0.285 3.715 24 F -0.187 7.187 25 F -0.186 7.186 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.252 0.748 36 H 0.193 0.807 37 H 0.229 0.771 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.115 8.158 -37.285 38.509 hybrid contribution -0.418 0.398 2.729 2.790 sum -5.533 8.557 -34.556 36.027 Atomic orbital electron populations 1.21812 0.93401 1.02398 1.02276 1.21387 0.97555 1.00400 0.92238 0.89290 1.20689 0.96886 0.94224 0.84950 1.42606 1.67989 1.27532 1.01798 1.19033 1.28266 1.05707 0.84016 0.93046 1.25603 1.02657 1.03102 0.94474 1.69902 1.53404 1.42364 0.97968 0.85335 0.78713 0.79346 0.77964 1.20078 1.22273 1.17023 1.21141 0.99580 0.95080 0.82824 1.45664 1.57311 1.28049 1.04633 1.18084 0.79246 0.84585 0.83757 1.90863 1.40942 1.25416 1.87038 1.20390 1.03374 0.99446 0.92371 1.21414 0.99033 0.93952 1.00885 1.26116 1.06290 1.06201 0.95363 1.82705 1.40128 1.14962 1.05793 1.25450 1.08907 1.06007 1.00608 1.20097 0.76609 0.78506 0.96280 1.93012 1.47830 1.96093 1.81742 1.93009 1.81907 1.48944 1.94767 0.92893 0.93047 0.90108 0.96019 0.95760 0.79693 0.93267 0.92303 0.91898 0.74789 0.80680 0.77078 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.94 71.98 0.64 -2.76 16 2 C -0.10 -2.62 2.46 -10.79 -0.03 -2.65 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.16 6.07 5.65 86.38 0.49 6.55 16 5 N -0.75 -34.99 5.13 -343.44 -1.76 -36.75 16 6 C -0.24 -13.91 10.47 84.03 0.88 -13.03 16 7 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 8 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 9 N -0.99 -64.05 13.97 21.65 0.30 -63.75 16 10 Si 0.96 44.79 27.74 68.60 1.90 46.70 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 13 H -0.25 -10.07 6.52 99.48 0.65 -9.43 16 14 C 0.14 3.65 5.06 86.38 0.44 4.09 16 15 N -0.70 -15.43 5.26 -466.58 -2.46 -17.88 16 16 C 0.56 14.87 7.70 86.60 0.67 15.54 16 17 O -0.56 -19.97 12.83 -4.14 -0.05 -20.02 16 18 C -0.14 -2.65 5.97 -19.87 -0.12 -2.77 16 19 C -0.13 -1.36 9.90 22.67 0.22 -1.13 16 20 C -0.20 -1.24 11.12 66.64 0.74 -0.50 16 21 S 0.30 2.21 22.95 -56.49 -1.30 0.91 16 22 C -0.29 -5.04 5.79 25.17 0.15 -4.90 16 23 C 0.34 6.90 5.03 71.23 0.36 7.26 16 24 F -0.21 -5.70 15.52 44.97 0.70 -5.01 16 25 F -0.20 -5.59 15.89 44.97 0.71 -4.88 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.39 7.18 -2.38 -0.02 1.37 16 28 H 0.08 1.36 7.18 -2.39 -0.02 1.34 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.37 15.85 4.71 -92.70 -0.44 15.41 16 32 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 6.21 6.23 -92.71 -0.58 5.63 16 36 H 0.18 1.03 7.13 -2.91 -0.02 1.01 16 37 H 0.21 -0.22 8.06 -2.91 -0.02 -0.24 16 38 H 0.16 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -82.60 337.46 3.00 -79.61 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.04 Total: 18.90 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.91 Total: 2.16 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -3.92 Total: -118.39 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 9 Polarization: -11.29 SS G_CDS: 1.41 Total: -9.88 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.30 Total: 0.91 kcal Total: -82.60 3.00 -79.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698773299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.859 kcal (2) G-P(sol) polarization free energy of solvation -82.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds