Wall clock time and date at job start Tue Mar 31 2020 11:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 120.00415 * 2 1 4 4 H 1.07997 * 119.99945 * 201.14489 * 3 2 1 5 5 C 1.38812 * 119.99625 * 21.13819 * 3 2 1 6 6 N 1.31621 * 120.00041 * 12.80099 * 5 3 2 7 7 Si 1.86804 * 120.00007 * 192.79291 * 5 3 2 8 8 H 1.48498 * 109.46648 * 60.00751 * 7 5 3 9 9 H 1.48501 * 109.46915 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47183 * 300.00408 * 7 5 3 11 11 C 1.46507 * 119.99830 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46752 * 269.99758 * 11 2 1 13 13 N 1.46507 * 109.46752 * 180.02562 * 12 11 2 14 14 C 1.46499 * 119.99923 * 270.00377 * 13 12 11 15 15 C 1.34766 * 119.99880 * 89.99997 * 13 12 11 16 16 O 1.21642 * 120.00550 * 5.27822 * 15 13 12 17 17 C 1.47192 * 120.00008 * 185.27300 * 15 13 12 18 18 C 1.44424 * 123.46060 * 319.33358 * 17 15 13 19 19 C 1.32769 * 113.08213 * 180.31836 * 18 17 15 20 20 S 1.75513 * 110.57799 * 359.74176 * 19 18 17 21 21 C 1.36016 * 123.46107 * 139.16540 * 17 15 13 22 22 C 1.50695 * 124.59095 * 359.96324 * 21 17 15 23 23 F 1.39895 * 109.47418 * 59.72211 * 22 21 17 24 24 F 1.39904 * 109.46844 * 299.72545 * 22 21 17 25 25 H 1.09004 * 109.47248 * 274.85926 * 1 2 3 26 26 H 1.09001 * 109.46966 * 34.85473 * 1 2 3 27 27 H 1.08999 * 109.47483 * 154.85532 * 1 2 3 28 28 H 0.96999 * 120.00257 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.46928 * 149.99891 * 11 2 1 30 30 H 1.09003 * 109.47141 * 29.99849 * 11 2 1 31 31 H 1.09003 * 109.47142 * 60.00096 * 12 11 2 32 32 H 1.08994 * 109.47171 * 299.99935 * 12 11 2 33 33 H 1.09004 * 109.46927 * 264.68790 * 14 13 12 34 34 H 1.08997 * 109.47298 * 24.67912 * 14 13 12 35 35 H 1.08999 * 109.47339 * 144.68594 * 14 13 12 36 36 H 1.07994 * 123.46157 * 0.05805 * 18 17 15 37 37 H 1.08004 * 124.71459 * 179.77006 * 19 18 17 38 38 H 1.08997 * 109.47158 * 179.72835 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1752 1.2173 -0.3374 5 6 1.5258 2.3476 0.4335 6 7 0.3786 2.2784 1.0750 7 14 2.3143 4.0092 0.1067 8 1 2.4631 4.2069 -1.3575 9 1 1.4556 5.0834 0.6670 10 1 3.6512 4.0580 0.7513 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1855 -2.9795 1.4412 14 6 2.4535 -4.2485 1.4404 15 6 4.5332 -2.9790 1.4413 16 8 5.1410 -1.9298 1.5388 17 6 5.2697 -4.2479 1.3236 18 6 4.8768 -5.4623 1.9994 19 6 5.6911 -6.4817 1.7535 20 16 6.9808 -5.9930 0.6679 21 6 6.3883 -4.3982 0.5646 22 6 7.0217 -3.3015 -0.2521 23 9 7.3908 -2.2469 0.5897 24 9 6.1054 -2.8399 -1.2033 25 1 -0.3634 0.0871 1.0240 26 1 -0.3633 0.8433 -0.5873 27 1 -0.3634 -0.9302 -0.4366 28 1 -0.0573 3.0901 1.3783 29 1 3.1498 -1.1382 -0.5143 30 1 1.6083 -2.0282 -0.5147 31 1 1.5000 -1.8415 1.9556 32 1 3.0415 -0.9516 1.9558 33 1 2.3542 -4.6113 2.4635 34 1 1.4632 -4.0965 1.0113 35 1 2.9984 -4.9819 0.8461 36 1 4.0119 -5.5329 2.6423 37 1 5.5758 -7.4740 2.1641 38 1 7.9059 -3.6894 -0.7578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699002903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:22 Heat of formation + Delta-G solvation = -60.582430 kcal Electronic energy + Delta-G solvation = -25169.708237 eV Core-core repulsion = 21197.425801 eV Total energy + Delta-G solvation = -3972.282436 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.82726 -46.82249 -39.96843 -37.19361 -35.98085 -34.81413 -31.40278 -31.32198 -28.90608 -27.12165 -26.13856 -25.74404 -24.13648 -22.86872 -21.16362 -20.24651 -18.86490 -18.52567 -17.20339 -17.07379 -16.65586 -16.24828 -15.99251 -15.25816 -15.23617 -14.80196 -14.43719 -13.76212 -13.54730 -13.45718 -13.24608 -13.15692 -13.03981 -13.01673 -12.60940 -12.47608 -12.34017 -12.20381 -11.77838 -11.44296 -11.26802 -11.21080 -10.80671 -10.73972 -10.45257 -10.09160 -9.86118 -9.72176 -9.59979 -9.45338 -8.72802 -8.55416 -8.30101 -6.69089 -5.64310 -3.08063 0.35204 1.03650 1.45018 1.82439 3.08904 3.36444 3.49626 3.52180 3.55831 3.59219 3.99130 4.42233 4.57631 4.61515 4.86284 4.96092 5.02655 5.19721 5.39799 5.43537 5.52842 5.58866 5.69309 5.73543 5.84729 5.89145 6.29156 6.34115 6.67227 6.77183 6.82104 7.10652 7.43259 7.66220 7.76589 7.93207 8.42270 8.49102 9.33155 9.95107 10.42407 11.41341 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.003858 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.240887 B = 7255.783722 C = 8170.944088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.599 5.599 3 C -0.250 4.250 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.912 5.912 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.603 5.603 14 C 0.076 3.924 15 C 0.559 3.441 16 O -0.505 6.505 17 C -0.092 4.092 18 C -0.115 4.115 19 C -0.215 4.215 20 S 0.210 5.790 21 C -0.269 4.269 22 C 0.348 3.652 23 F -0.172 7.172 24 F -0.188 7.188 25 H 0.029 0.971 26 H 0.045 0.955 27 H -0.004 1.004 28 H 0.252 0.748 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.160 0.840 37 H 0.175 0.825 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.418 -23.260 0.074 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.321 5.321 3 C -0.379 4.379 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.558 5.558 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.337 5.337 14 C -0.068 4.068 15 C 0.343 3.657 16 O -0.380 6.380 17 C -0.112 4.112 18 C -0.144 4.144 19 C -0.351 4.351 20 S 0.477 5.523 21 C -0.389 4.389 22 C 0.292 3.708 23 F -0.153 7.153 24 F -0.169 7.169 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.014 0.986 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.177 0.823 37 H 0.193 0.807 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.821 -23.240 -0.462 26.078 hybrid contribution -1.099 1.633 0.731 2.100 sum 10.722 -21.607 0.270 24.123 Atomic orbital electron populations 1.20823 0.82367 0.95507 0.99373 1.43978 1.01939 1.00604 1.85618 1.19249 0.97347 0.84966 1.36362 0.91200 1.24974 0.97713 0.98441 0.98546 1.70062 1.18052 1.26924 1.40763 0.86312 0.78577 0.83620 0.77990 1.21091 1.21677 1.20810 1.21112 0.96154 0.88116 0.93053 1.22691 0.95360 0.82952 1.02041 1.47912 1.05020 1.08149 1.72633 1.21985 0.97804 0.85996 1.00972 1.17631 0.82349 0.87544 0.78169 1.90932 1.67439 1.31860 1.47748 1.20464 0.95850 0.95744 0.99108 1.21480 1.01369 0.90170 1.01412 1.25582 0.99854 1.04073 1.05567 1.82816 1.27422 0.98291 1.43748 1.25077 1.02948 1.02579 1.08257 1.19472 0.89247 0.81422 0.80615 1.93140 1.91427 1.58652 1.72102 1.93075 1.69566 1.89883 1.64365 0.95319 0.93596 0.98583 0.93810 0.93450 0.94675 0.91255 0.89408 0.92861 0.90595 0.91341 0.82315 0.80728 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 9.01 59.85 0.54 4.68 16 2 N -0.60 -15.90 2.93 -181.11 -0.53 -16.43 16 3 C -0.25 -7.32 9.68 -15.06 -0.15 -7.47 16 4 H 0.07 2.08 7.85 -52.49 -0.41 1.67 16 5 C 0.00 0.03 5.11 -17.43 -0.09 -0.06 16 6 N -0.91 -27.38 10.59 55.49 0.59 -26.79 16 7 Si 0.91 23.14 29.57 -169.99 -5.03 18.11 16 8 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 10 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 11 C 0.14 3.23 6.03 -4.04 -0.02 3.21 16 12 C 0.09 1.90 5.75 -4.04 -0.02 1.88 16 13 N -0.60 -10.02 2.87 -182.94 -0.53 -10.55 16 14 C 0.08 0.86 9.00 59.85 0.54 1.40 16 15 C 0.56 10.07 6.99 -12.63 -0.09 9.98 16 16 O -0.50 -11.39 14.06 5.24 0.07 -11.31 16 17 C -0.09 -1.27 5.18 -104.63 -0.54 -1.81 16 18 C -0.12 -1.10 8.10 -39.02 -0.32 -1.41 16 19 C -0.22 -1.54 11.12 28.86 0.32 -1.22 16 20 S 0.21 1.63 22.95 -107.50 -2.47 -0.84 16 21 C -0.27 -3.32 5.78 -35.11 -0.20 -3.52 16 22 C 0.35 4.69 5.15 36.00 0.19 4.88 16 23 F -0.17 -2.98 15.15 2.25 0.03 -2.94 16 24 F -0.19 -3.09 17.06 2.25 0.04 -3.05 16 25 H 0.03 0.77 7.40 -51.93 -0.38 0.38 16 26 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 27 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 28 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.05 1.15 8.03 -51.93 -0.42 0.73 16 30 H 0.03 0.70 7.86 -51.93 -0.41 0.30 16 31 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.09 2.13 7.35 -51.93 -0.38 1.75 16 33 H 0.05 0.48 7.10 -51.93 -0.37 0.11 16 34 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 35 H 0.07 0.67 5.94 -51.93 -0.31 0.36 16 36 H 0.16 1.22 6.08 -52.49 -0.32 0.91 16 37 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.11 0.98 8.11 -51.93 -0.42 0.56 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -35.87 336.63 -7.19 -43.06 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -4.59 Total: -4.84 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 0.15 Total: 10.52 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.47 Total: -53.76 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.07 Total: -6.00 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.03 Total: 18.11 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.47 Total: -0.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.87 -7.19 -43.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699002903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.524 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds