Wall clock time and date at job start Tue Mar 31 2020 11:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 120.00415 * 2 1 4 4 H 1.07997 * 119.99945 * 201.14489 * 3 2 1 5 5 C 1.38812 * 119.99625 * 21.13819 * 3 2 1 6 6 N 1.31621 * 120.00041 * 12.80099 * 5 3 2 7 7 Si 1.86804 * 120.00007 * 192.79291 * 5 3 2 8 8 H 1.48498 * 109.46648 * 60.00751 * 7 5 3 9 9 H 1.48501 * 109.46915 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47183 * 300.00408 * 7 5 3 11 11 C 1.46507 * 119.99830 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46752 * 269.99758 * 11 2 1 13 13 N 1.46507 * 109.46752 * 180.02562 * 12 11 2 14 14 C 1.46499 * 119.99923 * 270.00377 * 13 12 11 15 15 C 1.34766 * 119.99880 * 89.99997 * 13 12 11 16 16 O 1.21642 * 120.00550 * 5.27822 * 15 13 12 17 17 C 1.47192 * 120.00008 * 185.27300 * 15 13 12 18 18 C 1.44424 * 123.46060 * 319.33358 * 17 15 13 19 19 C 1.32769 * 113.08213 * 180.31836 * 18 17 15 20 20 S 1.75513 * 110.57799 * 359.74176 * 19 18 17 21 21 C 1.36016 * 123.46107 * 139.16540 * 17 15 13 22 22 C 1.50695 * 124.59095 * 359.96324 * 21 17 15 23 23 F 1.39895 * 109.47418 * 59.72211 * 22 21 17 24 24 F 1.39904 * 109.46844 * 299.72545 * 22 21 17 25 25 H 1.09004 * 109.47248 * 274.85926 * 1 2 3 26 26 H 1.09001 * 109.46966 * 34.85473 * 1 2 3 27 27 H 1.08999 * 109.47483 * 154.85532 * 1 2 3 28 28 H 0.96999 * 120.00257 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.46928 * 149.99891 * 11 2 1 30 30 H 1.09003 * 109.47141 * 29.99849 * 11 2 1 31 31 H 1.09003 * 109.47142 * 60.00096 * 12 11 2 32 32 H 1.08994 * 109.47171 * 299.99935 * 12 11 2 33 33 H 1.09004 * 109.46927 * 264.68790 * 14 13 12 34 34 H 1.08997 * 109.47298 * 24.67912 * 14 13 12 35 35 H 1.08999 * 109.47339 * 144.68594 * 14 13 12 36 36 H 1.07994 * 123.46157 * 0.05805 * 18 17 15 37 37 H 1.08004 * 124.71459 * 179.77006 * 19 18 17 38 38 H 1.08997 * 109.47158 * 179.72835 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1752 1.2173 -0.3374 5 6 1.5258 2.3476 0.4335 6 7 0.3786 2.2784 1.0750 7 14 2.3143 4.0092 0.1067 8 1 2.4631 4.2069 -1.3575 9 1 1.4556 5.0834 0.6670 10 1 3.6512 4.0580 0.7513 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1855 -2.9795 1.4412 14 6 2.4535 -4.2485 1.4404 15 6 4.5332 -2.9790 1.4413 16 8 5.1410 -1.9298 1.5388 17 6 5.2697 -4.2479 1.3236 18 6 4.8768 -5.4623 1.9994 19 6 5.6911 -6.4817 1.7535 20 16 6.9808 -5.9930 0.6679 21 6 6.3883 -4.3982 0.5646 22 6 7.0217 -3.3015 -0.2521 23 9 7.3908 -2.2469 0.5897 24 9 6.1054 -2.8399 -1.2033 25 1 -0.3634 0.0871 1.0240 26 1 -0.3633 0.8433 -0.5873 27 1 -0.3634 -0.9302 -0.4366 28 1 -0.0573 3.0901 1.3783 29 1 3.1498 -1.1382 -0.5143 30 1 1.6083 -2.0282 -0.5147 31 1 1.5000 -1.8415 1.9556 32 1 3.0415 -0.9516 1.9558 33 1 2.3542 -4.6113 2.4635 34 1 1.4632 -4.0965 1.0113 35 1 2.9984 -4.9819 0.8461 36 1 4.0119 -5.5329 2.6423 37 1 5.5758 -7.4740 2.1641 38 1 7.9059 -3.6894 -0.7578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699002903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:21 Heat of formation + Delta-G solvation = -84.484010 kcal Electronic energy + Delta-G solvation = -25170.744687 eV Core-core repulsion = 21197.425801 eV Total energy + Delta-G solvation = -3973.318886 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97425 -48.01228 -41.20570 -38.26378 -37.68947 -36.44049 -33.49022 -32.13554 -30.59877 -28.18388 -27.94068 -27.31534 -25.53857 -24.12915 -22.58229 -21.70603 -20.01622 -19.43407 -18.86468 -18.31368 -18.21478 -17.47309 -17.13953 -16.95122 -16.32303 -16.15058 -15.78577 -15.45104 -15.02829 -14.93311 -14.58729 -14.39522 -14.33916 -14.06461 -13.95825 -13.85191 -13.69754 -13.31864 -13.16906 -12.98892 -12.79270 -12.77486 -12.46132 -12.32610 -12.11599 -12.03879 -11.99920 -11.65777 -10.99319 -10.71099 -10.19204 -9.79369 -9.40139 -8.82084 -7.88837 -5.35372 -0.48165 0.32730 0.77509 1.02716 1.40815 1.43722 1.50558 1.84387 2.13806 2.48461 2.71364 3.09426 3.24951 3.50515 3.62256 3.73938 3.89518 4.03847 4.16913 4.27091 4.34616 4.41897 4.55221 4.68225 4.75320 4.81355 4.86514 4.93663 4.99135 5.12427 5.15602 5.31447 5.50718 5.59625 5.69892 6.27512 6.37720 7.10503 7.12342 7.81021 8.21509 9.14178 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.003858 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.240887 B = 7255.783722 C = 8170.944088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.616 5.616 3 C -0.268 4.268 4 H 0.053 0.947 5 C -0.045 4.045 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.285 1.285 11 C 0.151 3.849 12 C 0.113 3.887 13 N -0.604 5.604 14 C 0.069 3.931 15 C 0.550 3.450 16 O -0.569 6.569 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.195 4.195 20 S 0.295 5.705 21 C -0.299 4.299 22 C 0.328 3.672 23 F -0.203 7.203 24 F -0.213 7.213 25 H 0.009 0.991 26 H 0.019 0.981 27 H 0.037 0.963 28 H 0.251 0.749 29 H 0.018 0.982 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.177 0.823 37 H 0.219 0.781 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.849 -27.135 0.055 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.340 5.340 3 C -0.398 4.398 4 H 0.070 0.930 5 C -0.240 4.240 6 N -0.579 5.579 7 Si 0.792 3.208 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.211 1.211 11 C 0.024 3.976 12 C -0.012 4.012 13 N -0.336 5.336 14 C -0.072 4.072 15 C 0.337 3.663 16 O -0.449 6.449 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.331 4.331 20 S 0.563 5.437 21 C -0.419 4.419 22 C 0.273 3.727 23 F -0.184 7.184 24 F -0.194 7.194 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.194 0.806 37 H 0.235 0.765 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.241 -27.198 -0.488 29.829 hybrid contribution -1.133 2.655 0.705 2.971 sum 11.108 -24.543 0.218 26.941 Atomic orbital electron populations 1.20618 0.81573 0.96432 0.98039 1.44158 1.02646 1.01138 1.86014 1.19351 0.97002 0.86774 1.36663 0.92957 1.25662 0.98416 1.01410 0.98526 1.70195 1.18910 1.27507 1.41280 0.85388 0.77520 0.79757 0.78087 1.20234 1.20824 1.21114 1.21089 0.94837 0.87385 0.94282 1.22033 0.95256 0.84082 0.99829 1.47915 1.05105 1.08549 1.72031 1.22344 0.97720 0.83707 1.03425 1.18427 0.82607 0.88659 0.76620 1.90887 1.68744 1.34655 1.50624 1.20333 0.96764 0.95167 1.02002 1.21492 1.03028 0.88846 1.02195 1.26134 0.98166 1.05086 1.03705 1.82556 1.25786 0.93565 1.41824 1.25303 1.03173 1.05022 1.08362 1.20302 0.90741 0.81024 0.80601 1.93068 1.91695 1.60464 1.73150 1.93010 1.70756 1.90333 1.65331 0.97236 0.96199 0.94481 0.93972 0.96399 0.91491 0.90001 0.94407 0.89957 0.89748 0.89260 0.80636 0.76476 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.04 9.01 127.77 1.15 10.20 16 2 N -0.62 -33.67 2.93 -726.92 -2.13 -35.80 16 3 C -0.27 -16.38 9.68 84.03 0.81 -15.56 16 4 H 0.05 3.31 7.85 -2.91 -0.02 3.29 16 5 C -0.04 -2.69 5.11 84.86 0.43 -2.26 16 6 N -0.93 -57.26 10.59 21.65 0.23 -57.03 16 7 Si 0.96 48.84 29.57 68.60 2.03 50.86 16 8 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 9 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 11 C 0.15 6.98 6.03 86.38 0.52 7.51 16 12 C 0.11 4.80 5.75 86.38 0.50 5.30 16 13 N -0.60 -20.23 2.87 -850.93 -2.44 -22.68 16 14 C 0.07 1.40 9.00 127.77 1.15 2.55 16 15 C 0.55 20.58 6.99 86.60 0.61 21.18 16 16 O -0.57 -27.80 14.06 -4.16 -0.06 -27.86 16 17 C -0.12 -3.25 5.18 -19.87 -0.10 -3.35 16 18 C -0.13 -2.00 8.10 22.67 0.18 -1.82 16 19 C -0.20 -1.78 11.12 66.64 0.74 -1.04 16 20 S 0.29 3.32 22.95 -56.49 -1.30 2.03 16 21 C -0.30 -7.00 5.78 25.17 0.15 -6.86 16 22 C 0.33 8.96 5.15 71.23 0.37 9.32 16 23 F -0.20 -7.46 15.15 44.97 0.68 -6.78 16 24 F -0.21 -7.36 17.06 44.97 0.77 -6.59 16 25 H 0.01 0.51 7.40 -2.39 -0.02 0.49 16 26 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 27 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 28 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.02 0.91 8.03 -2.39 -0.02 0.89 16 30 H 0.07 2.63 7.86 -2.39 -0.02 2.61 16 31 H 0.08 3.22 8.07 -2.39 -0.02 3.20 16 32 H 0.04 1.97 7.35 -2.39 -0.02 1.95 16 33 H 0.08 1.21 7.10 -2.38 -0.02 1.19 16 34 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 35 H 0.09 1.47 5.94 -2.39 -0.01 1.46 16 36 H 0.18 2.01 6.08 -2.91 -0.02 1.99 16 37 H 0.22 0.14 8.06 -2.91 -0.02 0.11 16 38 H 0.17 2.59 8.11 -2.39 -0.02 2.57 16 Total: -1.00 -85.78 336.63 5.37 -80.41 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: 1.09 Total: -1.73 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 6.51 Total: 25.17 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -4.34 Total: -115.51 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.06 Total: -27.86 kcal Atomic # 9 Polarization: -14.82 SS G_CDS: 1.45 Total: -13.37 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.86 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.30 Total: 2.03 kcal Total: -85.78 5.37 -80.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699002903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.073 kcal (2) G-P(sol) polarization free energy of solvation -85.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds