Wall clock time and date at job start Tue Mar 31 2020 12:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47216 * 270.00462 * 3 2 1 5 5 H 1.48504 * 109.46941 * 29.99928 * 3 2 1 6 6 H 1.48500 * 109.47178 * 150.00103 * 3 2 1 7 7 C 1.38808 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47413 * 179.97438 * 10 9 7 12 12 C 1.31008 * 120.00168 * 124.99661 * 11 10 9 13 13 C 1.50699 * 119.99858 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47023 * 125.00257 * 13 12 11 15 15 C 1.34767 * 120.00146 * 179.97438 * 14 13 12 16 16 O 1.21531 * 120.00171 * 0.02562 * 15 14 13 17 17 C 1.48061 * 120.00154 * 180.02562 * 15 14 13 18 18 C 1.39525 * 119.46814 * 180.02562 * 17 15 14 19 19 C 1.38461 * 119.39378 * 179.72200 * 18 17 15 20 20 C 1.38664 * 118.36110 * 359.97438 * 19 18 17 21 21 O 1.35046 * 134.03613 * 179.97438 * 20 19 18 22 22 C 1.34378 * 108.12861 * 180.02562 * 21 20 19 23 23 O 1.35086 * 124.88838 * 180.02562 * 22 21 20 24 24 N 1.30710 * 110.21872 * 359.97438 * 22 21 20 25 25 C 1.36018 * 108.83395 * 359.97438 * 24 22 21 26 26 N 1.32527 * 133.38504 * 179.97438 * 25 24 22 27 27 H 0.97001 * 120.00027 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99776 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47461 * 59.99798 * 10 9 7 30 30 H 1.09007 * 109.47233 * 299.99849 * 10 9 7 31 31 H 1.07998 * 119.99871 * 305.00632 * 11 10 9 32 32 H 1.08001 * 119.99345 * 0.02562 * 12 11 10 33 33 H 1.09001 * 109.47457 * 5.00292 * 13 12 11 34 34 H 1.09005 * 109.46618 * 244.99978 * 13 12 11 35 35 H 0.97007 * 119.99988 * 0.02562 * 14 13 12 36 36 H 1.07995 * 120.30090 * 359.70003 * 18 17 15 37 37 H 1.08002 * 120.81999 * 180.02562 * 19 18 17 38 38 H 0.96697 * 113.99951 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 0.0001 12 6 1.1473 -5.7232 -0.9291 13 6 0.1676 -6.8683 -0.9288 14 7 -0.5089 -6.9325 -2.2266 15 6 -1.4339 -7.8849 -2.4579 16 8 -1.7072 -8.6903 -1.5897 17 6 -2.1173 -7.9502 -3.7698 18 6 -3.0735 -8.9405 -3.9971 19 6 -3.7158 -8.9966 -5.2224 20 6 -3.3807 -8.0567 -6.1853 21 8 -3.7920 -7.8206 -7.4498 22 6 -3.1137 -6.7597 -7.9189 23 8 -3.2622 -6.2319 -9.1535 24 7 -2.2902 -6.3113 -7.0081 25 6 -2.4079 -7.0808 -5.8927 26 7 -1.8168 -7.0611 -4.7067 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6847 -3.7146 0.8894 30 1 2.6847 -3.7146 -0.8906 31 1 0.3203 -4.8638 0.7665 32 1 1.9059 -5.6616 -1.6954 33 1 -0.5705 -6.7148 -0.1415 34 1 0.7006 -7.8022 -0.7502 35 1 -0.2905 -6.2900 -2.9197 36 1 -3.3102 -9.6570 -3.2244 37 1 -4.4600 -9.7531 -5.4230 38 1 -2.6944 -5.4685 -9.3257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699335848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:02 Heat of formation + Delta-G solvation = 24.065315 kcal Electronic energy + Delta-G solvation = -24288.835720 eV Core-core repulsion = 20328.160201 eV Total energy + Delta-G solvation = -3960.675519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -44.01221 -40.54691 -39.11603 -38.44695 -36.31012 -35.25140 -34.76465 -33.18908 -32.52041 -30.75691 -30.27767 -27.42190 -25.59619 -24.35620 -23.81781 -22.99092 -22.00293 -21.21286 -19.87741 -19.84403 -19.04225 -18.00086 -17.98011 -17.80069 -17.06887 -16.15002 -15.62421 -15.43110 -15.13482 -14.70874 -14.54164 -14.32934 -14.05795 -13.99703 -13.77090 -13.54911 -13.39922 -13.21533 -12.77921 -12.02211 -11.84489 -11.74101 -11.64756 -11.01516 -10.81616 -10.70432 -10.57188 -10.11886 -10.06791 -9.94139 -9.78727 -9.32086 -9.13845 -8.97866 -8.70583 -6.92763 -5.75945 -3.05501 0.03540 0.06241 0.87119 1.68242 2.23459 2.40392 2.45136 3.14523 3.36706 3.44619 3.49423 3.51371 3.52136 3.72956 4.24722 4.34633 4.53424 4.61041 4.75042 4.86223 4.96595 5.22768 5.27039 5.32345 5.56607 5.58955 5.62392 5.78529 6.01424 6.15267 6.19344 6.25736 6.49813 6.58939 6.75775 6.91680 7.10822 7.16669 7.43455 7.69966 7.97034 8.42332 9.53566 10.10125 10.45316 11.46782 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.002430 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.374149 B =11518.215586 C =13450.874038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.105 4.105 12 C -0.202 4.202 13 C 0.153 3.847 14 N -0.698 5.698 15 C 0.572 3.428 16 O -0.531 6.531 17 C 0.118 3.882 18 C -0.103 4.103 19 C -0.033 4.033 20 C -0.035 4.035 21 O -0.194 6.194 22 C 0.479 3.521 23 O -0.407 6.407 24 N -0.507 5.507 25 C 0.265 3.735 26 N -0.415 5.415 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.416 0.584 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -21.181 -15.716 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.124 4.124 12 C -0.222 4.222 13 C 0.031 3.969 14 N -0.348 5.348 15 C 0.356 3.644 16 O -0.408 6.408 17 C -0.029 4.029 18 C -0.125 4.125 19 C -0.059 4.059 20 C -0.088 4.088 21 O -0.088 6.088 22 C 0.227 3.773 23 O -0.209 6.209 24 N -0.259 5.259 25 C 0.025 3.975 26 N -0.130 5.130 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.253 0.747 36 H 0.189 0.811 37 H 0.177 0.823 38 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -7.556 -20.868 -15.222 26.912 hybrid contribution -0.520 0.722 -0.841 1.224 sum -8.076 -20.146 -16.063 27.002 Atomic orbital electron populations 1.69672 1.05133 1.25705 1.57563 1.24766 0.95558 0.97755 1.02908 0.86161 0.78624 0.83692 0.77534 1.21673 1.21742 1.20718 1.19243 0.91068 0.84021 1.42931 0.91071 1.42297 1.05967 0.99561 1.89573 1.19829 0.92624 0.84569 0.98462 1.23339 0.98206 0.93858 0.97002 1.22679 1.01022 0.97024 1.01447 1.20432 0.94029 0.98014 0.84417 1.45962 1.39227 1.32152 1.17500 1.17601 0.79892 0.81720 0.85209 1.90813 1.64562 1.40853 1.44546 1.21224 0.96142 0.92170 0.93354 1.21960 0.94765 0.99063 0.96674 1.20360 0.99923 0.96421 0.89242 1.21116 1.01226 1.02401 0.84048 1.84377 1.55833 1.42400 1.26158 1.22289 0.84897 0.83062 0.87009 1.84673 1.64978 1.50308 1.20945 1.71137 1.25163 1.29313 1.00322 1.19692 0.93927 0.91846 0.92083 1.66654 1.24482 1.23371 0.98470 0.93471 0.78117 0.95127 0.95614 0.87207 0.86590 0.90728 0.90603 0.74699 0.81093 0.82342 0.69002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -18.88 5.59 -61.09 -0.34 -19.22 16 10 C 0.17 3.49 6.70 -5.20 -0.03 3.45 16 11 C -0.10 -1.71 9.24 -36.03 -0.33 -2.05 16 12 C -0.20 -2.81 9.24 -36.03 -0.33 -3.14 16 13 C 0.15 1.94 6.11 -5.19 -0.03 1.90 16 14 N -0.70 -8.91 5.54 -62.36 -0.35 -9.25 16 15 C 0.57 7.43 7.81 -12.23 -0.10 7.33 16 16 O -0.53 -7.83 16.29 5.34 0.09 -7.74 16 17 C 0.12 1.36 6.74 -83.02 -0.56 0.80 16 18 C -0.10 -0.87 9.61 -39.02 -0.38 -1.25 16 19 C -0.03 -0.24 10.17 -39.34 -0.40 -0.64 16 20 C -0.03 -0.34 7.44 -38.43 -0.29 -0.63 16 21 O -0.19 -1.79 10.78 -19.88 -0.21 -2.01 16 22 C 0.48 4.07 9.53 52.28 0.50 4.57 16 23 O -0.41 -1.91 13.62 -40.26 -0.55 -2.46 16 24 N -0.51 -5.68 11.37 -14.31 -0.16 -5.84 16 25 C 0.26 3.22 8.38 -157.08 -1.32 1.90 16 26 N -0.41 -5.32 9.57 -9.23 -0.09 -5.41 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 28 H 0.39 10.49 7.66 -40.82 -0.31 10.18 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.52 7.79 -51.93 -0.40 0.12 16 31 H 0.11 1.74 7.84 -52.49 -0.41 1.33 16 32 H 0.12 1.55 7.84 -52.49 -0.41 1.14 16 33 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.42 5.29 7.77 -40.82 -0.32 4.97 16 36 H 0.17 1.14 7.61 -52.49 -0.40 0.74 16 37 H 0.16 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.45 -0.10 9.06 45.56 0.41 0.31 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -36.08 347.00 -7.26 -43.34 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -3.06 Total: 8.93 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -3.51 Total: 4.75 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.21 Total: -67.60 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.68 Total: -12.21 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.08 -7.26 -43.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699335848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.407 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds