Wall clock time and date at job start Tue Mar 31 2020 12:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47216 * 270.00462 * 3 2 1 5 5 H 1.48504 * 109.46941 * 29.99928 * 3 2 1 6 6 H 1.48500 * 109.47178 * 150.00103 * 3 2 1 7 7 C 1.38808 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47413 * 179.97438 * 10 9 7 12 12 C 1.31008 * 120.00168 * 124.99661 * 11 10 9 13 13 C 1.50699 * 119.99858 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47023 * 125.00257 * 13 12 11 15 15 C 1.34767 * 120.00146 * 179.97438 * 14 13 12 16 16 O 1.21531 * 120.00171 * 0.02562 * 15 14 13 17 17 C 1.48061 * 120.00154 * 180.02562 * 15 14 13 18 18 C 1.39525 * 119.46814 * 180.02562 * 17 15 14 19 19 C 1.38461 * 119.39378 * 179.72200 * 18 17 15 20 20 C 1.38664 * 118.36110 * 359.97438 * 19 18 17 21 21 O 1.35046 * 134.03613 * 179.97438 * 20 19 18 22 22 C 1.34378 * 108.12861 * 180.02562 * 21 20 19 23 23 O 1.35086 * 124.88838 * 180.02562 * 22 21 20 24 24 N 1.30710 * 110.21872 * 359.97438 * 22 21 20 25 25 C 1.36018 * 108.83395 * 359.97438 * 24 22 21 26 26 N 1.32527 * 133.38504 * 179.97438 * 25 24 22 27 27 H 0.97001 * 120.00027 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99776 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47461 * 59.99798 * 10 9 7 30 30 H 1.09007 * 109.47233 * 299.99849 * 10 9 7 31 31 H 1.07998 * 119.99871 * 305.00632 * 11 10 9 32 32 H 1.08001 * 119.99345 * 0.02562 * 12 11 10 33 33 H 1.09001 * 109.47457 * 5.00292 * 13 12 11 34 34 H 1.09005 * 109.46618 * 244.99978 * 13 12 11 35 35 H 0.97007 * 119.99988 * 0.02562 * 14 13 12 36 36 H 1.07995 * 120.30090 * 359.70003 * 18 17 15 37 37 H 1.08002 * 120.81999 * 180.02562 * 19 18 17 38 38 H 0.96697 * 113.99951 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 0.0001 12 6 1.1473 -5.7232 -0.9291 13 6 0.1676 -6.8683 -0.9288 14 7 -0.5089 -6.9325 -2.2266 15 6 -1.4339 -7.8849 -2.4579 16 8 -1.7072 -8.6903 -1.5897 17 6 -2.1173 -7.9502 -3.7698 18 6 -3.0735 -8.9405 -3.9971 19 6 -3.7158 -8.9966 -5.2224 20 6 -3.3807 -8.0567 -6.1853 21 8 -3.7920 -7.8206 -7.4498 22 6 -3.1137 -6.7597 -7.9189 23 8 -3.2622 -6.2319 -9.1535 24 7 -2.2902 -6.3113 -7.0081 25 6 -2.4079 -7.0808 -5.8927 26 7 -1.8168 -7.0611 -4.7067 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6847 -3.7146 0.8894 30 1 2.6847 -3.7146 -0.8906 31 1 0.3203 -4.8638 0.7665 32 1 1.9059 -5.6616 -1.6954 33 1 -0.5705 -6.7148 -0.1415 34 1 0.7006 -7.8022 -0.7502 35 1 -0.2905 -6.2900 -2.9197 36 1 -3.3102 -9.6570 -3.2244 37 1 -4.4600 -9.7531 -5.4230 38 1 -2.6944 -5.4685 -9.3257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699335848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:01 Heat of formation + Delta-G solvation = -7.579285 kcal Electronic energy + Delta-G solvation = -24290.207933 eV Core-core repulsion = 20328.160201 eV Total energy + Delta-G solvation = -3962.047731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.70400 -41.41954 -39.85722 -39.07201 -37.68643 -36.31035 -35.92918 -34.53752 -33.55315 -32.39231 -31.21755 -28.80943 -26.68416 -25.61041 -24.81490 -23.75065 -23.56938 -22.16347 -21.03239 -20.45537 -19.98089 -19.13278 -18.68945 -18.66210 -18.60708 -17.14416 -16.74405 -16.58006 -16.21228 -15.94831 -15.56051 -15.22549 -15.18288 -15.01828 -14.87212 -14.63444 -14.58163 -14.26780 -14.13500 -13.49754 -13.32393 -12.87900 -12.74942 -12.41563 -12.39009 -12.19194 -11.99841 -11.79938 -11.63783 -11.04139 -10.84908 -10.75283 -10.40927 -10.02996 -9.82191 -9.01747 -7.96246 -5.26355 -0.72478 -0.60870 0.29187 1.02014 1.03226 1.47619 1.49568 1.49847 1.58451 1.70814 2.19903 2.53965 2.56939 2.85164 3.03569 3.37516 3.50276 3.66361 3.73282 3.89544 4.09903 4.12385 4.23654 4.27341 4.47490 4.59714 4.65462 4.69231 4.74425 4.92525 5.00762 5.01684 5.22694 5.47072 5.65235 5.66851 5.83875 6.08987 6.25798 6.34092 6.52897 6.96682 7.31608 8.05939 8.29808 9.27360 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.002430 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.374149 B =11518.215586 C =13450.874038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.166 4.166 13 C 0.156 3.844 14 N -0.700 5.700 15 C 0.573 3.427 16 O -0.552 6.552 17 C 0.100 3.900 18 C -0.097 4.097 19 C -0.011 4.011 20 C -0.038 4.038 21 O -0.194 6.194 22 C 0.493 3.507 23 O -0.394 6.394 24 N -0.540 5.540 25 C 0.237 3.763 26 N -0.445 5.445 27 H 0.252 0.748 28 H 0.374 0.626 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.416 0.584 36 H 0.192 0.808 37 H 0.203 0.797 38 H 0.467 0.533 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.287 -22.567 -16.894 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.047 3.953 11 C -0.148 4.148 12 C -0.185 4.185 13 C 0.033 3.967 14 N -0.350 5.350 15 C 0.358 3.642 16 O -0.430 6.430 17 C -0.046 4.046 18 C -0.118 4.118 19 C -0.038 4.038 20 C -0.091 4.091 21 O -0.088 6.088 22 C 0.241 3.759 23 O -0.199 6.199 24 N -0.294 5.294 25 C -0.004 4.004 26 N -0.161 5.161 27 H 0.061 0.939 28 H 0.206 0.794 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.253 0.747 36 H 0.209 0.791 37 H 0.220 0.780 38 H 0.333 0.667 Dipole moment (debyes) X Y Z Total from point charges -7.716 -22.266 -16.419 28.721 hybrid contribution -0.452 1.054 -0.605 1.296 sum -8.168 -21.212 -17.024 28.398 Atomic orbital electron populations 1.69836 1.06734 1.26188 1.59325 1.25645 0.96466 1.01341 1.03495 0.85081 0.77705 0.79095 0.77511 1.21272 1.22100 1.19217 1.19683 0.91639 0.85219 1.41524 0.90356 1.42540 1.05706 1.00979 1.89540 1.19921 0.93215 0.83722 0.98474 1.23024 0.98789 0.93968 0.99064 1.22778 1.00170 0.95856 0.99687 1.20405 0.93802 0.97987 0.84472 1.45955 1.39399 1.32290 1.17359 1.17823 0.79528 0.81142 0.85694 1.90791 1.65238 1.41553 1.45386 1.21135 0.97418 0.93449 0.92586 1.22197 0.93630 0.98291 0.97656 1.20832 0.99385 0.95930 0.87607 1.21368 1.00765 1.02418 0.84507 1.84378 1.55863 1.42609 1.25944 1.22405 0.83673 0.82368 0.87415 1.84719 1.65299 1.51043 1.18848 1.71079 1.26862 1.30507 1.00920 1.19921 0.95097 0.93143 0.92198 1.66504 1.25824 1.24545 0.99252 0.93946 0.79439 0.94931 0.95156 0.86988 0.85646 0.91062 0.89013 0.74741 0.79108 0.77983 0.66707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.74 -39.06 5.59 -347.18 -1.94 -41.00 16 10 C 0.17 6.98 6.70 85.63 0.57 7.55 16 11 C -0.13 -4.20 9.24 25.64 0.24 -3.96 16 12 C -0.17 -4.43 9.24 25.64 0.24 -4.19 16 13 C 0.16 3.78 6.11 85.63 0.52 4.30 16 14 N -0.70 -17.62 5.54 -469.50 -2.60 -20.22 16 15 C 0.57 14.65 7.81 86.85 0.68 15.33 16 16 O -0.55 -15.82 16.29 -3.81 -0.06 -15.88 16 17 C 0.10 2.24 6.74 41.94 0.28 2.53 16 18 C -0.10 -1.44 9.61 22.63 0.22 -1.23 16 19 C -0.01 -0.13 10.17 22.42 0.23 0.10 16 20 C -0.04 -0.67 7.44 23.02 0.17 -0.50 16 21 O -0.19 -3.26 10.78 11.61 0.13 -3.13 16 22 C 0.49 7.83 9.53 130.41 1.24 9.07 16 23 O -0.39 -3.03 13.62 -61.33 -0.84 -3.87 16 24 N -0.54 -12.03 11.37 -427.51 -4.86 -16.89 16 25 C 0.24 5.71 8.38 134.45 1.13 6.83 16 26 N -0.45 -11.54 9.57 -183.13 -1.75 -13.29 16 27 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.37 20.92 7.66 -92.71 -0.71 20.21 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 1.21 7.79 -2.38 -0.02 1.19 16 31 H 0.11 3.58 7.84 -2.91 -0.02 3.56 16 32 H 0.13 3.15 7.84 -2.91 -0.02 3.13 16 33 H 0.07 1.82 7.79 -2.39 -0.02 1.80 16 34 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.42 10.60 7.77 -92.70 -0.72 9.88 16 36 H 0.19 2.04 7.61 -2.91 -0.02 2.02 16 37 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 38 H 0.47 -0.94 9.06 -74.06 -0.67 -1.61 16 Total: -1.00 -78.57 347.00 -3.73 -82.30 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.94 Total: 25.23 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.82 Total: 18.40 kcal Atomic # 7 Polarization: -140.87 SS G_CDS: -10.87 Total: -151.74 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.77 Total: -22.88 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.57 -3.73 -82.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699335848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.725 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds