Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46574 * 2 1 4 4 C 1.53003 * 109.47208 * 240.00178 * 2 1 3 5 5 N 1.46491 * 109.47145 * 184.99980 * 4 2 1 6 6 C 1.46505 * 120.00248 * 269.99890 * 5 4 2 7 7 C 1.36937 * 120.00212 * 89.99645 * 5 4 2 8 8 H 1.08000 * 119.99890 * 22.33327 * 7 5 4 9 9 C 1.38811 * 120.00605 * 202.33757 * 7 5 4 10 10 N 1.31623 * 119.99512 * 11.36759 * 9 7 5 11 11 Si 1.86795 * 120.00491 * 191.37423 * 9 7 5 12 12 H 1.48506 * 109.46829 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47585 * 119.99336 * 11 9 7 14 14 H 1.48503 * 109.47033 * 239.99802 * 11 9 7 15 15 N 1.46498 * 109.46971 * 119.99736 * 2 1 3 16 16 C 1.34773 * 120.00361 * 274.99886 * 15 2 1 17 17 O 1.21643 * 119.99567 * 0.02562 * 16 15 2 18 18 C 1.47182 * 120.00270 * 179.72382 * 16 15 2 19 19 C 1.44428 * 123.46035 * 359.97438 * 18 16 15 20 20 C 1.32771 * 113.08392 * 179.76436 * 19 18 16 21 21 S 1.75501 * 110.57477 * 0.47984 * 20 19 18 22 22 C 1.36007 * 123.46453 * 180.27563 * 18 16 15 23 23 C 1.50705 * 124.59022 * 359.97438 * 22 18 16 24 24 F 1.39895 * 109.47117 * 300.00023 * 23 22 18 25 25 F 1.39908 * 109.47042 * 60.00050 * 23 22 18 26 26 H 1.09008 * 109.46555 * 60.00193 * 1 2 3 27 27 H 1.09003 * 109.46692 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47026 * 300.00245 * 1 2 3 29 29 H 1.09002 * 109.46506 * 304.99849 * 4 2 1 30 30 H 1.09001 * 109.47196 * 64.99640 * 4 2 1 31 31 H 1.09000 * 109.46566 * 94.22228 * 6 5 4 32 32 H 1.08999 * 109.47142 * 214.22546 * 6 5 4 33 33 H 1.08996 * 109.46755 * 334.22364 * 6 5 4 34 34 H 0.97001 * 119.99960 * 180.02562 * 10 9 7 35 35 H 0.97001 * 119.99609 * 95.00098 * 15 2 1 36 36 H 1.07995 * 123.45762 * 359.97438 * 19 18 16 37 37 H 1.08000 * 124.71323 * 180.15833 * 20 19 18 38 38 H 1.08994 * 109.47247 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0850 -1.9158 -0.6023 8 1 3.5339 -2.8398 -0.5085 9 6 5.3863 -1.8326 -0.1263 10 7 5.9795 -0.6612 -0.0337 11 14 6.2958 -3.3828 0.3825 12 1 5.4145 -4.5614 0.1838 13 1 7.5190 -3.5337 -0.4458 14 1 6.6765 -3.2858 1.8146 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8574 1.1619 2.4118 18 6 2.6319 -0.7135 3.5604 19 6 2.9899 -2.1125 3.5818 20 6 3.4058 -2.5253 4.7732 21 16 3.3627 -1.2079 5.9320 22 6 2.7832 -0.1060 4.7678 23 6 2.4802 1.3451 5.0394 24 9 3.2803 2.1496 4.2211 25 9 1.1314 1.5987 4.7674 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1370 31 1 4.6022 0.9456 -0.9801 32 1 5.2405 -0.2027 -2.1811 33 1 3.7812 0.7484 -2.5471 34 1 6.8889 -0.6030 0.2985 35 1 2.2490 -1.6317 1.1526 36 1 2.9291 -2.7560 2.7166 37 1 3.7215 -3.5330 4.9993 38 1 2.6880 1.5700 6.0855 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699472940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -78.181274 kcal Electronic energy + Delta-G solvation = -25916.946734 eV Core-core repulsion = 21943.901155 eV Total energy + Delta-G solvation = -3973.045579 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.50848 -46.51578 -39.40170 -37.01211 -36.01930 -33.95293 -31.37425 -30.88461 -30.07809 -26.51138 -26.12592 -25.59851 -23.50894 -21.91826 -21.21683 -19.91989 -19.11227 -18.30405 -17.04135 -16.80465 -16.59528 -16.04352 -15.53799 -14.97667 -14.90184 -14.47285 -14.11490 -13.76570 -13.36092 -13.26246 -13.08130 -12.86974 -12.85256 -12.56425 -12.44648 -12.18246 -12.07433 -11.81625 -11.38201 -11.28629 -11.11793 -10.95804 -10.89198 -10.71773 -10.37929 -10.23060 -10.04301 -9.84563 -9.27350 -9.06923 -8.59127 -8.44390 -8.14580 -6.78000 -5.74938 -3.21184 0.69321 1.39868 1.81020 2.19445 3.28964 3.36167 3.39392 3.79337 3.90857 4.04380 4.28165 4.43146 4.90691 4.94518 5.27602 5.34539 5.40131 5.47714 5.52698 5.70181 5.84163 5.99348 6.01133 6.05192 6.19193 6.27035 6.29204 6.47502 6.57879 6.77119 6.92266 7.31422 7.39430 7.69213 7.81243 8.30840 8.35688 8.95629 9.19153 9.83592 10.34150 11.29088 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.006499 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.162065 B = 4307.069767 C = 5594.383543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.258 4.258 8 H 0.066 0.934 9 C 0.009 3.991 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.289 1.289 15 N -0.677 5.677 16 C 0.568 3.432 17 O -0.536 6.536 18 C -0.086 4.086 19 C -0.102 4.102 20 C -0.216 4.216 21 S 0.195 5.805 22 C -0.268 4.268 23 C 0.361 3.639 24 F -0.180 7.180 25 F -0.185 7.185 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.044 0.956 33 H -0.004 1.004 34 H 0.251 0.749 35 H 0.402 0.598 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 -2.392 10.368 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.388 4.388 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.216 1.216 15 N -0.326 5.326 16 C 0.352 3.648 17 O -0.415 6.415 18 C -0.105 4.105 19 C -0.131 4.131 20 C -0.351 4.351 21 S 0.461 5.539 22 C -0.388 4.388 23 C 0.305 3.695 24 F -0.161 7.161 25 F -0.167 7.167 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.238 0.762 36 H 0.175 0.825 37 H 0.191 0.809 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.243 -1.390 11.906 14.005 hybrid contribution 0.596 -1.386 -1.328 2.010 sum -6.647 -2.776 10.578 12.798 Atomic orbital electron populations 1.22157 0.96830 1.01202 1.01636 1.21848 0.91804 0.98482 0.86711 0.90388 1.21192 0.85990 0.97848 0.93616 1.43880 0.98873 1.22634 1.66626 1.20794 0.92921 0.90472 0.93863 1.19078 0.97175 0.89389 1.33153 0.91660 1.24991 0.98654 0.96007 0.99399 1.70081 1.13246 1.21454 1.49100 0.86390 0.80303 0.83052 0.78084 1.20275 1.21625 1.21642 1.45530 1.64653 1.14161 1.08281 1.17397 0.78296 0.86343 0.82779 1.90798 1.50725 1.14840 1.85095 1.20507 1.02153 0.93781 0.94071 1.21388 0.99377 0.93820 0.98494 1.25499 1.09225 1.03352 0.97017 1.82595 1.62035 0.98116 1.11131 1.25035 1.12157 1.01634 1.00004 1.19272 0.73969 0.83274 0.92956 1.93084 1.73082 1.73943 1.75943 1.93034 1.33687 1.94465 1.95471 0.92246 0.93082 0.92833 0.93389 0.92909 0.95355 0.93748 0.98579 0.93794 0.76162 0.82489 0.80950 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 37.16 0.35 -2.15 16 2 C 0.12 2.29 2.88 -67.93 -0.20 2.10 16 3 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 4 C 0.14 2.75 5.36 -4.04 -0.02 2.72 16 5 N -0.60 -14.22 2.82 -181.12 -0.51 -14.73 16 6 C 0.16 4.04 9.01 59.85 0.54 4.58 16 7 C -0.26 -6.48 8.02 -15.06 -0.12 -6.60 16 8 H 0.07 1.57 7.84 -52.49 -0.41 1.16 16 9 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 10 N -0.89 -25.44 10.59 55.49 0.59 -24.86 16 11 Si 0.89 20.60 29.57 -169.99 -5.03 15.58 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 N -0.68 -13.47 4.47 -54.95 -0.25 -13.71 16 16 C 0.57 12.03 7.72 -12.63 -0.10 11.94 16 17 O -0.54 -12.67 12.42 5.24 0.07 -12.61 16 18 C -0.09 -1.58 5.98 -104.63 -0.63 -2.21 16 19 C -0.10 -1.59 9.91 -39.02 -0.39 -1.98 16 20 C -0.22 -2.76 11.12 28.86 0.32 -2.44 16 21 S 0.19 2.33 22.95 -107.50 -2.47 -0.13 16 22 C -0.27 -4.36 5.78 -35.11 -0.20 -4.56 16 23 C 0.36 5.82 5.03 36.01 0.18 6.00 16 24 F -0.18 -3.58 15.71 2.25 0.04 -3.55 16 25 F -0.19 -3.34 15.71 2.25 0.04 -3.30 16 26 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 30 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 31 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 32 H 0.04 1.17 7.19 -51.93 -0.37 0.79 16 33 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 34 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.40 7.70 5.94 -40.82 -0.24 7.46 16 36 H 0.16 2.34 7.10 -52.49 -0.37 1.97 16 37 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.11 1.19 8.11 -51.93 -0.42 0.77 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -32.30 336.69 -7.46 -39.76 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.66 Total: 4.94 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.35 Total: 7.54 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.17 Total: -53.30 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.07 Total: -6.85 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.58 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.47 Total: -0.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.30 -7.46 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699472940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.424 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds