Wall clock time and date at job start Tue Mar 31 2020 11:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46574 * 2 1 4 4 C 1.53003 * 109.47208 * 240.00178 * 2 1 3 5 5 N 1.46491 * 109.47145 * 184.99980 * 4 2 1 6 6 C 1.46505 * 120.00248 * 269.99890 * 5 4 2 7 7 C 1.36937 * 120.00212 * 89.99645 * 5 4 2 8 8 H 1.08000 * 119.99890 * 22.33327 * 7 5 4 9 9 C 1.38811 * 120.00605 * 202.33757 * 7 5 4 10 10 N 1.31623 * 119.99512 * 11.36759 * 9 7 5 11 11 Si 1.86795 * 120.00491 * 191.37423 * 9 7 5 12 12 H 1.48506 * 109.46829 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47585 * 119.99336 * 11 9 7 14 14 H 1.48503 * 109.47033 * 239.99802 * 11 9 7 15 15 N 1.46498 * 109.46971 * 119.99736 * 2 1 3 16 16 C 1.34773 * 120.00361 * 274.99886 * 15 2 1 17 17 O 1.21643 * 119.99567 * 0.02562 * 16 15 2 18 18 C 1.47182 * 120.00270 * 179.72382 * 16 15 2 19 19 C 1.44428 * 123.46035 * 359.97438 * 18 16 15 20 20 C 1.32771 * 113.08392 * 179.76436 * 19 18 16 21 21 S 1.75501 * 110.57477 * 0.47984 * 20 19 18 22 22 C 1.36007 * 123.46453 * 180.27563 * 18 16 15 23 23 C 1.50705 * 124.59022 * 359.97438 * 22 18 16 24 24 F 1.39895 * 109.47117 * 300.00023 * 23 22 18 25 25 F 1.39908 * 109.47042 * 60.00050 * 23 22 18 26 26 H 1.09008 * 109.46555 * 60.00193 * 1 2 3 27 27 H 1.09003 * 109.46692 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47026 * 300.00245 * 1 2 3 29 29 H 1.09002 * 109.46506 * 304.99849 * 4 2 1 30 30 H 1.09001 * 109.47196 * 64.99640 * 4 2 1 31 31 H 1.09000 * 109.46566 * 94.22228 * 6 5 4 32 32 H 1.08999 * 109.47142 * 214.22546 * 6 5 4 33 33 H 1.08996 * 109.46755 * 334.22364 * 6 5 4 34 34 H 0.97001 * 119.99960 * 180.02562 * 10 9 7 35 35 H 0.97001 * 119.99609 * 95.00098 * 15 2 1 36 36 H 1.07995 * 123.45762 * 359.97438 * 19 18 16 37 37 H 1.08000 * 124.71323 * 180.15833 * 20 19 18 38 38 H 1.08994 * 109.47247 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0850 -1.9158 -0.6023 8 1 3.5339 -2.8398 -0.5085 9 6 5.3863 -1.8326 -0.1263 10 7 5.9795 -0.6612 -0.0337 11 14 6.2958 -3.3828 0.3825 12 1 5.4145 -4.5614 0.1838 13 1 7.5190 -3.5337 -0.4458 14 1 6.6765 -3.2858 1.8146 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8574 1.1619 2.4118 18 6 2.6319 -0.7135 3.5604 19 6 2.9899 -2.1125 3.5818 20 6 3.4058 -2.5253 4.7732 21 16 3.3627 -1.2079 5.9320 22 6 2.7832 -0.1060 4.7678 23 6 2.4802 1.3451 5.0394 24 9 3.2803 2.1496 4.2211 25 9 1.1314 1.5987 4.7674 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1370 31 1 4.6022 0.9456 -0.9801 32 1 5.2405 -0.2027 -2.1811 33 1 3.7812 0.7484 -2.5471 34 1 6.8889 -0.6030 0.2985 35 1 2.2490 -1.6317 1.1526 36 1 2.9291 -2.7560 2.7166 37 1 3.7215 -3.5330 4.9993 38 1 2.6880 1.5700 6.0855 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699472940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:34 Heat of formation + Delta-G solvation = -98.674586 kcal Electronic energy + Delta-G solvation = -25917.835390 eV Core-core repulsion = 21943.901155 eV Total energy + Delta-G solvation = -3973.934235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.84805 -47.89092 -40.89422 -38.41314 -37.61628 -35.70431 -33.18202 -32.05852 -31.70532 -28.05578 -27.73378 -27.36408 -24.80767 -23.51959 -22.67285 -21.49139 -20.54712 -19.49448 -18.72283 -18.18474 -18.15424 -17.34165 -17.01627 -16.78052 -16.26913 -15.93907 -15.54275 -15.44681 -14.98573 -14.70369 -14.58651 -14.50454 -14.24526 -13.91051 -13.82160 -13.71735 -13.29299 -13.27710 -13.09996 -12.86780 -12.72376 -12.52197 -12.28313 -12.16959 -12.09404 -11.95259 -11.90680 -11.66865 -10.85353 -10.59680 -10.19473 -9.85683 -9.36700 -8.75216 -7.75117 -5.23117 -0.50894 0.33833 0.73929 0.98097 1.45868 1.50111 1.58522 2.32133 2.52617 2.55083 2.81742 3.13231 3.40896 3.69199 3.72715 3.81608 3.99228 4.11567 4.24671 4.34787 4.43579 4.53766 4.75292 4.76922 4.84344 4.89867 4.96151 4.99968 5.13163 5.18996 5.32858 5.39382 5.66833 5.73887 5.77829 6.36285 6.75514 7.18514 7.40860 7.91134 8.38356 9.28900 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.006499 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.162065 B = 4307.069767 C = 5594.383543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 H 0.036 0.964 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.180 3.820 7 C -0.247 4.247 8 H 0.082 0.918 9 C -0.047 4.047 10 N -0.936 5.936 11 Si 0.952 3.048 12 H -0.254 1.254 13 H -0.304 1.304 14 H -0.292 1.292 15 N -0.677 5.677 16 C 0.556 3.444 17 O -0.575 6.575 18 C -0.128 4.128 19 C -0.127 4.127 20 C -0.209 4.209 21 S 0.297 5.703 22 C -0.294 4.294 23 C 0.345 3.655 24 F -0.209 7.209 25 F -0.202 7.202 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.074 0.926 31 H -0.012 1.012 32 H 0.020 0.980 33 H 0.026 0.974 34 H 0.240 0.760 35 H 0.405 0.595 36 H 0.157 0.843 37 H 0.210 0.790 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 -4.979 11.832 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.055 0.945 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.035 3.965 7 C -0.377 4.377 8 H 0.100 0.900 9 C -0.242 4.242 10 N -0.583 5.583 11 Si 0.781 3.219 12 H -0.177 1.177 13 H -0.232 1.232 14 H -0.220 1.220 15 N -0.326 5.326 16 C 0.341 3.659 17 O -0.457 6.457 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.344 4.344 21 S 0.565 5.435 22 C -0.414 4.414 23 C 0.290 3.710 24 F -0.190 7.190 25 F -0.183 7.183 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.006 0.994 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.242 0.758 36 H 0.174 0.826 37 H 0.227 0.773 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.142 -4.021 13.365 16.158 hybrid contribution 0.816 -0.576 -1.719 1.988 sum -7.326 -4.597 11.646 14.506 Atomic orbital electron populations 1.22015 0.93752 1.02675 1.01905 1.21747 0.94111 0.96105 0.86626 0.94524 1.21389 0.83366 0.99425 0.94288 1.44122 1.00755 1.22036 1.66411 1.20471 0.92791 0.89993 0.93261 1.19474 0.97012 0.90174 1.31075 0.90016 1.25698 0.99810 0.98307 1.00392 1.70300 1.12897 1.23705 1.51363 0.85416 0.78707 0.80770 0.76984 1.17736 1.23224 1.21964 1.45573 1.64486 1.14191 1.08311 1.17983 0.77728 0.86180 0.83970 1.90754 1.52597 1.16468 1.85897 1.20510 1.05161 0.95415 0.93730 1.21350 1.01530 0.92701 0.99964 1.26036 1.06731 1.05380 0.96294 1.82206 1.58431 0.95087 1.07820 1.25453 1.12187 1.02584 1.01198 1.20073 0.72788 0.83203 0.94888 1.93015 1.73881 1.74909 1.77238 1.92988 1.34960 1.94586 1.95749 0.89943 0.90891 0.94592 0.91118 0.90807 0.99358 0.96146 0.95539 0.95015 0.75804 0.82574 0.77323 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.48 71.98 0.68 -3.70 16 2 C 0.12 4.70 2.88 45.00 0.13 4.83 16 3 H 0.04 1.72 7.58 -2.39 -0.02 1.70 16 4 C 0.14 5.30 5.36 86.38 0.46 5.76 16 5 N -0.61 -28.97 2.82 -726.94 -2.05 -31.02 16 6 C 0.18 9.10 9.01 127.77 1.15 10.25 16 7 C -0.25 -12.26 8.02 84.03 0.67 -11.59 16 8 H 0.08 3.75 7.84 -2.91 -0.02 3.72 16 9 C -0.05 -2.48 5.13 84.86 0.44 -2.05 16 10 N -0.94 -55.13 10.59 21.65 0.23 -54.90 16 11 Si 0.95 42.21 29.57 68.60 2.03 44.24 16 12 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 13 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 14 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 15 N -0.68 -27.42 4.47 -446.01 -1.99 -29.41 16 16 C 0.56 24.46 7.72 86.59 0.67 25.13 16 17 O -0.58 -28.77 12.42 -4.17 -0.05 -28.83 16 18 C -0.13 -4.74 5.98 -19.87 -0.12 -4.86 16 19 C -0.13 -3.83 9.91 22.67 0.22 -3.60 16 20 C -0.21 -4.64 11.12 66.64 0.74 -3.90 16 21 S 0.30 6.05 22.95 -56.49 -1.30 4.76 16 22 C -0.29 -9.28 5.78 25.17 0.15 -9.13 16 23 C 0.35 11.03 5.03 71.24 0.36 11.39 16 24 F -0.21 -8.66 15.71 44.97 0.71 -7.95 16 25 F -0.20 -7.40 15.71 44.97 0.71 -6.70 16 26 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 2.35 8.03 -2.39 -0.02 2.33 16 30 H 0.07 2.45 7.86 -2.39 -0.02 2.43 16 31 H -0.01 -0.70 7.42 -2.39 -0.02 -0.71 16 32 H 0.02 1.09 7.19 -2.39 -0.02 1.07 16 33 H 0.03 1.14 7.84 -2.39 -0.02 1.12 16 34 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.41 15.52 5.94 -92.71 -0.55 14.97 16 36 H 0.16 4.51 7.10 -2.91 -0.02 4.49 16 37 H 0.21 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.16 3.23 8.11 -2.39 -0.02 3.21 16 Total: -1.00 -75.01 336.69 4.38 -70.63 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.55 Total: 20.64 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.56 Total: 18.53 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -3.81 Total: -115.33 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.05 Total: -28.83 kcal Atomic # 9 Polarization: -16.06 SS G_CDS: 1.41 Total: -14.65 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.30 Total: 4.76 kcal Total: -75.01 4.38 -70.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699472940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.049 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds