Wall clock time and date at job start Tue Mar 31 2020 12:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46644 * 119.99951 * 3 2 1 6 6 H 1.48501 * 109.47175 * 239.99814 * 3 2 1 7 7 C 1.38810 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99865 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00560 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00499 * 174.96414 * 9 7 2 11 11 C 1.53002 * 115.54845 * 65.27579 * 10 9 7 12 12 N 1.46506 * 109.46949 * 80.39600 * 11 10 9 13 13 C 1.34775 * 120.00390 * 174.94667 * 12 11 10 14 14 O 1.21629 * 119.99706 * 0.02562 * 13 12 11 15 15 C 1.47155 * 120.00288 * 179.97438 * 13 12 11 16 16 C 1.38401 * 126.88470 * 180.02562 * 15 13 12 17 17 C 1.39678 * 105.36114 * 179.97438 * 16 15 13 18 18 C 1.50699 * 126.06902 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47276 * 90.00615 * 18 17 16 20 20 F 1.39904 * 109.47060 * 210.00084 * 18 17 16 21 21 F 1.39901 * 109.47492 * 329.99868 * 18 17 16 22 22 N 1.30860 * 107.85939 * 0.02562 * 17 16 15 23 23 N 1.28443 * 110.92976 * 359.70848 * 22 17 16 24 24 H 0.96995 * 125.19474 * 180.28451 * 23 22 17 25 25 C 1.52995 * 117.50070 * 279.61027 * 10 9 7 26 26 C 1.52996 * 117.50484 * 210.94927 * 10 9 7 27 27 H 0.97009 * 120.00254 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99487 * 354.96702 * 9 7 2 29 29 H 1.08996 * 109.47311 * 200.39149 * 11 10 9 30 30 H 1.08994 * 109.47398 * 320.39611 * 11 10 9 31 31 H 0.97006 * 119.99685 * 354.94529 * 12 11 10 32 32 H 1.08004 * 127.32349 * 359.97438 * 16 15 13 33 33 H 1.08997 * 117.50148 * 0.02562 * 25 10 9 34 34 H 1.09010 * 117.49961 * 145.01798 * 25 10 9 35 35 H 1.08994 * 117.50449 * 214.98115 * 26 10 9 36 36 H 1.09009 * 117.49494 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1039 1.6962 1.2126 6 1 3.1040 1.6963 -1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0535 -3.6544 -0.1125 11 6 2.9764 -3.9908 1.0606 12 7 2.1846 -4.5464 2.1610 13 6 2.7999 -5.0119 3.2661 14 8 4.0126 -4.9703 3.3500 15 6 2.0046 -5.5695 4.3715 16 6 2.4847 -6.0831 5.5637 17 6 1.3523 -6.4828 6.2770 18 6 1.3425 -7.1102 7.6472 19 9 1.2617 -6.1070 8.6189 20 9 0.2380 -7.9611 7.7625 21 9 2.5185 -7.8451 7.8321 22 7 0.3015 -6.2168 5.5439 23 7 0.6441 -5.6786 4.4291 24 1 0.0307 -5.3953 3.7332 25 6 2.4983 -4.0925 -1.5092 26 6 1.3454 -4.8173 -0.8103 27 1 -0.4851 0.8401 0.0004 28 1 0.3583 -2.3897 0.0735 29 1 3.7181 -4.7228 0.7411 30 1 3.4810 -3.0853 1.3973 31 1 1.2174 -4.5793 2.0942 32 1 3.5158 -6.1587 5.8761 33 1 2.2495 -3.4384 -2.3449 34 1 3.4481 -4.6209 -1.5924 35 1 1.5371 -5.8221 -0.4339 36 1 0.3375 -4.6403 -1.1858 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699667695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:47 Heat of formation + Delta-G solvation = -71.463556 kcal Electronic energy + Delta-G solvation = -25929.281739 eV Core-core repulsion = 21422.607038 eV Total energy + Delta-G solvation = -4506.674702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.36616 -47.90345 -47.85140 -43.15586 -39.54531 -37.65653 -34.29604 -33.18917 -32.84746 -31.46267 -29.84573 -27.26199 -26.74525 -24.05728 -23.52479 -22.01336 -21.82036 -20.92499 -19.82308 -18.88798 -18.76423 -18.40433 -17.77029 -17.25622 -16.28423 -16.06671 -15.89539 -15.44989 -14.77658 -14.70329 -14.58739 -14.36411 -14.29078 -14.12910 -14.00586 -13.98339 -13.95625 -13.56337 -13.20707 -12.69243 -12.42102 -12.09668 -11.61683 -11.11715 -11.10163 -10.96956 -10.52534 -10.38754 -10.25820 -10.22761 -9.83295 -9.66867 -9.51657 -9.03546 -8.95955 -7.21854 -5.95829 -3.27575 0.83759 1.60837 1.90367 2.52355 2.92276 3.03620 3.34707 3.36941 3.39982 3.40354 3.67726 4.13879 4.22105 4.39331 4.48501 4.55026 4.90151 5.01298 5.08131 5.14422 5.33068 5.45334 5.63580 5.71105 5.92489 5.99664 6.25599 6.28670 6.36872 6.41586 6.48285 6.65171 7.16810 7.41325 7.57260 8.00290 8.21704 9.33409 9.84557 10.19537 11.25676 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.002877 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.272003 B = 9730.044887 C =10344.877026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.689 5.689 10 C 0.124 3.876 11 C 0.146 3.854 12 N -0.703 5.703 13 C 0.585 3.415 14 O -0.520 6.520 15 C -0.017 4.017 16 C -0.112 4.112 17 C -0.073 4.073 18 C 0.563 3.437 19 F -0.168 7.168 20 F -0.168 7.168 21 F -0.166 7.166 22 N -0.212 5.212 23 N -0.352 5.352 24 H 0.456 0.544 25 C -0.183 4.183 26 C -0.187 4.187 27 H 0.258 0.742 28 H 0.387 0.613 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.397 0.603 32 H 0.180 0.820 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -15.661 9.613 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.030 3.970 11 C 0.021 3.979 12 N -0.352 5.352 13 C 0.368 3.632 14 O -0.394 6.394 15 C -0.144 4.144 16 C -0.141 4.141 17 C -0.231 4.231 18 C 0.507 3.493 19 F -0.150 7.150 20 F -0.149 7.149 21 F -0.147 7.147 22 N -0.048 5.048 23 N -0.072 5.072 24 H 0.303 0.697 25 C -0.223 4.223 26 C -0.225 4.225 27 H 0.068 0.932 28 H 0.222 0.778 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.197 0.803 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.968 -15.496 9.660 18.286 hybrid contribution 0.036 1.149 -0.291 1.185 sum 1.004 -14.348 9.369 17.165 Atomic orbital electron populations 1.69639 1.05174 1.26176 1.56802 1.24768 0.95528 0.97851 1.02159 0.86247 0.78599 0.83163 0.78074 1.21619 1.21051 1.21023 1.19113 0.91175 0.83427 1.43804 0.90909 1.41783 1.05682 0.98493 1.86914 1.20149 0.97649 0.88347 0.90878 1.21418 0.92822 0.98433 0.85185 1.45833 1.10717 1.61325 1.17335 1.16808 0.86920 0.78626 0.80842 1.90864 1.12458 1.56454 1.79652 1.22013 0.83906 1.09016 0.99514 1.21884 1.00176 1.00423 0.91585 1.21649 0.92216 1.11813 0.97424 1.16689 0.73938 0.75921 0.82787 1.93254 1.95908 1.60796 1.65017 1.93234 1.53701 1.71552 1.96447 1.93230 1.48049 1.77732 1.95683 1.73053 1.25932 1.11351 0.94483 1.43795 1.06409 1.42709 1.14246 0.69662 1.23371 0.97342 1.03332 0.98284 1.23108 0.98069 0.95727 1.05584 0.93240 0.77752 0.91365 0.89920 0.76981 0.80304 0.88427 0.89766 0.89462 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.20 13.06 55.49 0.72 -25.48 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.21 9.56 -15.06 -0.14 -6.35 16 8 H 0.07 1.83 7.76 -52.49 -0.41 1.42 16 9 N -0.69 -15.13 5.49 -47.24 -0.26 -15.39 16 10 C 0.12 2.10 2.15 -131.83 -0.28 1.82 16 11 C 0.15 2.32 5.73 -4.04 -0.02 2.29 16 12 N -0.70 -9.39 5.51 -61.47 -0.34 -9.72 16 13 C 0.58 8.20 7.80 -12.64 -0.10 8.10 16 14 O -0.52 -8.96 16.91 5.25 0.09 -8.88 16 15 C -0.02 -0.20 7.16 -82.06 -0.59 -0.78 16 16 C -0.11 -1.29 10.48 -38.98 -0.41 -1.69 16 17 C -0.07 -0.83 6.56 -82.47 -0.54 -1.37 16 18 C 0.56 5.95 3.55 36.01 0.13 6.08 16 19 F -0.17 -1.85 17.30 2.25 0.04 -1.81 16 20 F -0.17 -1.84 17.25 2.25 0.04 -1.80 16 21 F -0.17 -1.66 17.04 2.25 0.04 -1.62 16 22 N -0.21 -2.42 12.08 33.64 0.41 -2.02 16 23 N -0.35 -3.49 6.85 33.48 0.23 -3.26 16 24 H 0.46 3.18 8.22 -190.46 -1.57 1.62 16 25 C -0.18 -2.85 10.11 -26.70 -0.27 -3.12 16 26 C -0.19 -2.60 10.14 -26.70 -0.27 -2.87 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.39 9.05 8.04 -40.82 -0.33 8.72 16 29 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 30 H 0.08 1.55 7.73 -51.93 -0.40 1.15 16 31 H 0.40 4.46 7.66 -40.82 -0.31 4.15 16 32 H 0.18 1.81 8.06 -52.48 -0.42 1.38 16 33 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.08 1.15 8.08 -51.92 -0.42 0.73 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -30.11 337.34 -6.24 -36.35 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.67 Total: 10.33 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.59 Total: 1.83 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.76 Total: -55.87 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.12 Total: -5.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.11 -6.24 -36.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699667695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.110 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds