Wall clock time and date at job start Tue Mar 31 2020 12:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46644 * 119.99951 * 3 2 1 6 6 H 1.48501 * 109.47175 * 239.99814 * 3 2 1 7 7 C 1.38810 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99865 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00560 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00499 * 174.96414 * 9 7 2 11 11 C 1.53002 * 115.54845 * 65.27579 * 10 9 7 12 12 N 1.46506 * 109.46949 * 80.39600 * 11 10 9 13 13 C 1.34775 * 120.00390 * 174.94667 * 12 11 10 14 14 O 1.21629 * 119.99706 * 0.02562 * 13 12 11 15 15 C 1.47155 * 120.00288 * 179.97438 * 13 12 11 16 16 C 1.38401 * 126.88470 * 180.02562 * 15 13 12 17 17 C 1.39678 * 105.36114 * 179.97438 * 16 15 13 18 18 C 1.50699 * 126.06902 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47276 * 90.00615 * 18 17 16 20 20 F 1.39904 * 109.47060 * 210.00084 * 18 17 16 21 21 F 1.39901 * 109.47492 * 329.99868 * 18 17 16 22 22 N 1.30860 * 107.85939 * 0.02562 * 17 16 15 23 23 N 1.28443 * 110.92976 * 359.70848 * 22 17 16 24 24 H 0.96995 * 125.19474 * 180.28451 * 23 22 17 25 25 C 1.52995 * 117.50070 * 279.61027 * 10 9 7 26 26 C 1.52996 * 117.50484 * 210.94927 * 10 9 7 27 27 H 0.97009 * 120.00254 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99487 * 354.96702 * 9 7 2 29 29 H 1.08996 * 109.47311 * 200.39149 * 11 10 9 30 30 H 1.08994 * 109.47398 * 320.39611 * 11 10 9 31 31 H 0.97006 * 119.99685 * 354.94529 * 12 11 10 32 32 H 1.08004 * 127.32349 * 359.97438 * 16 15 13 33 33 H 1.08997 * 117.50148 * 0.02562 * 25 10 9 34 34 H 1.09010 * 117.49961 * 145.01798 * 25 10 9 35 35 H 1.08994 * 117.50449 * 214.98115 * 26 10 9 36 36 H 1.09009 * 117.49494 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1039 1.6962 1.2126 6 1 3.1040 1.6963 -1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0535 -3.6544 -0.1125 11 6 2.9764 -3.9908 1.0606 12 7 2.1846 -4.5464 2.1610 13 6 2.7999 -5.0119 3.2661 14 8 4.0126 -4.9703 3.3500 15 6 2.0046 -5.5695 4.3715 16 6 2.4847 -6.0831 5.5637 17 6 1.3523 -6.4828 6.2770 18 6 1.3425 -7.1102 7.6472 19 9 1.2617 -6.1070 8.6189 20 9 0.2380 -7.9611 7.7625 21 9 2.5185 -7.8451 7.8321 22 7 0.3015 -6.2168 5.5439 23 7 0.6441 -5.6786 4.4291 24 1 0.0307 -5.3953 3.7332 25 6 2.4983 -4.0925 -1.5092 26 6 1.3454 -4.8173 -0.8103 27 1 -0.4851 0.8401 0.0004 28 1 0.3583 -2.3897 0.0735 29 1 3.7181 -4.7228 0.7411 30 1 3.4810 -3.0853 1.3973 31 1 1.2174 -4.5793 2.0942 32 1 3.5158 -6.1587 5.8761 33 1 2.2495 -3.4384 -2.3449 34 1 3.4481 -4.6209 -1.5924 35 1 1.5371 -5.8221 -0.4339 36 1 0.3375 -4.6403 -1.1858 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699667695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:46 Heat of formation + Delta-G solvation = -92.837398 kcal Electronic energy + Delta-G solvation = -25930.208579 eV Core-core repulsion = 21422.607038 eV Total energy + Delta-G solvation = -4507.601541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.20437 -48.72738 -48.70396 -44.05237 -40.73290 -38.99645 -35.55551 -34.93340 -33.76940 -32.41849 -31.65901 -28.40338 -27.67741 -25.95912 -24.57915 -23.21497 -22.69625 -21.91843 -21.05162 -20.01666 -19.60610 -19.37145 -19.12583 -18.61791 -17.45973 -17.13383 -17.03038 -16.69657 -16.14080 -15.73746 -15.58141 -15.48269 -15.42716 -15.12884 -15.03880 -14.96593 -14.84570 -14.80688 -14.74996 -13.76398 -13.59608 -13.57047 -12.93914 -12.82757 -12.54481 -12.31954 -12.23994 -12.00661 -11.63139 -11.49474 -11.09632 -10.98276 -10.67839 -10.62662 -10.16986 -9.05166 -7.97769 -5.26243 -0.11806 0.70670 1.07964 1.47346 1.47793 1.53492 1.60076 1.89874 1.96586 2.50466 2.52133 2.81429 3.04809 3.29858 3.36939 3.43446 3.62938 3.66811 3.81650 3.99912 4.16380 4.18197 4.29651 4.71669 4.82666 4.84267 4.92221 5.04609 5.17732 5.20220 5.40656 5.50723 5.55317 6.24850 6.25578 6.38736 6.90425 7.32363 8.05152 8.27883 9.24089 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.002877 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.272003 B = 9730.044887 C =10344.877026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.961 3.039 4 H -0.297 1.297 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.232 4.232 8 H 0.072 0.928 9 N -0.699 5.699 10 C 0.099 3.901 11 C 0.158 3.842 12 N -0.695 5.695 13 C 0.591 3.409 14 O -0.554 6.554 15 C -0.024 4.024 16 C -0.111 4.111 17 C -0.081 4.081 18 C 0.568 3.432 19 F -0.171 7.171 20 F -0.170 7.170 21 F -0.161 7.161 22 N -0.216 5.216 23 N -0.335 5.335 24 H 0.468 0.532 25 C -0.184 4.184 26 C -0.153 4.153 27 H 0.250 0.750 28 H 0.378 0.622 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.408 0.592 32 H 0.190 0.810 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -17.223 9.714 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.791 3.209 4 H -0.224 1.224 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.007 3.993 11 C 0.033 3.967 12 N -0.344 5.344 13 C 0.376 3.624 14 O -0.431 6.431 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.238 4.238 18 C 0.512 3.488 19 F -0.152 7.152 20 F -0.151 7.151 21 F -0.143 7.143 22 N -0.053 5.053 23 N -0.057 5.057 24 H 0.318 0.682 25 C -0.225 4.225 26 C -0.191 4.191 27 H 0.059 0.941 28 H 0.212 0.788 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.244 0.756 32 H 0.207 0.793 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.280 -17.100 9.746 19.724 hybrid contribution -0.031 1.530 -0.324 1.564 sum 1.250 -15.570 9.422 18.242 Atomic orbital electron populations 1.69760 1.06232 1.26027 1.59340 1.25388 0.96219 1.00505 1.03753 0.85400 0.77366 0.80102 0.78034 1.22369 1.20919 1.20554 1.19382 0.91280 0.84775 1.40891 0.91029 1.41822 1.05379 0.99480 1.87068 1.20343 0.99315 0.87803 0.91873 1.21134 0.92846 0.97595 0.85169 1.45701 1.11192 1.60768 1.16785 1.16938 0.86559 0.77926 0.81019 1.90849 1.14018 1.57929 1.80335 1.21647 0.84502 1.09978 0.99084 1.22093 1.00814 0.99655 0.91334 1.21744 0.92124 1.12131 0.97786 1.16569 0.73994 0.75797 0.82426 1.93250 1.95933 1.60959 1.65096 1.93231 1.53852 1.71580 1.96431 1.93240 1.47782 1.77600 1.95635 1.73045 1.26060 1.11388 0.94814 1.43805 1.05983 1.41764 1.14141 0.68182 1.23382 0.99428 1.03426 0.96217 1.23182 0.97350 0.95905 1.02649 0.94073 0.78830 0.89722 0.93274 0.75637 0.79317 0.90547 0.87315 0.86115 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.07 13.06 21.65 0.28 -54.78 16 2 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 3 Si 0.96 44.42 29.55 68.60 2.03 46.45 16 4 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.23 -11.77 9.56 84.03 0.80 -10.97 16 8 H 0.07 3.59 7.76 -2.91 -0.02 3.57 16 9 N -0.70 -30.45 5.49 -303.37 -1.67 -32.12 16 10 C 0.10 3.20 2.15 3.60 0.01 3.20 16 11 C 0.16 4.77 5.73 86.38 0.49 5.27 16 12 N -0.69 -17.36 5.51 -466.63 -2.57 -19.93 16 13 C 0.59 15.72 7.80 86.58 0.68 16.39 16 14 O -0.55 -18.59 16.91 -4.12 -0.07 -18.66 16 15 C -0.02 -0.52 7.16 40.78 0.29 -0.23 16 16 C -0.11 -2.35 10.48 22.66 0.24 -2.12 16 17 C -0.08 -1.71 6.56 43.05 0.28 -1.42 16 18 C 0.57 11.18 3.55 71.24 0.25 11.43 16 19 F -0.17 -3.54 17.30 44.97 0.78 -2.76 16 20 F -0.17 -3.46 17.25 44.97 0.78 -2.69 16 21 F -0.16 -2.98 17.04 44.97 0.77 -2.21 16 22 N -0.22 -4.53 12.08 -47.49 -0.57 -5.11 16 23 N -0.33 -5.98 6.85 -48.00 -0.33 -6.31 16 24 H 0.47 5.52 8.22 -220.01 -1.81 3.71 16 25 C -0.18 -5.35 10.11 30.61 0.31 -5.04 16 26 C -0.15 -3.78 10.14 30.61 0.31 -3.47 16 27 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 28 H 0.38 17.68 8.04 -92.71 -0.75 16.93 16 29 H 0.08 2.30 7.94 -2.39 -0.02 2.28 16 30 H 0.05 1.83 7.73 -2.39 -0.02 1.81 16 31 H 0.41 8.33 7.66 -92.70 -0.71 7.62 16 32 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.11 2.62 8.08 -2.38 -0.02 2.60 16 35 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -64.36 337.34 1.48 -62.88 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -2.08 Total: 25.29 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 4.13 Total: 9.96 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -4.86 Total: -118.25 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.07 Total: -18.66 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 2.32 Total: -7.66 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.36 1.48 -62.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699667695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.957 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds