Wall clock time and date at job start Tue Mar 31 2020 11:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46960 * 2 1 4 4 C 1.53000 * 109.47422 * 239.99896 * 2 1 3 5 5 N 1.46494 * 109.47140 * 184.99560 * 4 2 1 6 6 C 1.46495 * 120.00151 * 269.99648 * 5 4 2 7 7 C 1.36937 * 119.99831 * 90.00503 * 5 4 2 8 8 H 1.08007 * 120.00019 * 328.48530 * 7 5 4 9 9 C 1.38807 * 120.00164 * 148.76312 * 7 5 4 10 10 N 1.31621 * 120.00269 * 159.40151 * 9 7 5 11 11 Si 1.86793 * 120.00033 * 339.40092 * 9 7 5 12 12 H 1.48500 * 109.47327 * 88.15858 * 11 9 7 13 13 H 1.48508 * 109.47245 * 208.15793 * 11 9 7 14 14 H 1.48500 * 109.47115 * 328.15662 * 11 9 7 15 15 N 1.46501 * 109.47468 * 119.99765 * 2 1 3 16 16 C 1.34780 * 119.99783 * 275.00541 * 15 2 1 17 17 O 1.21629 * 120.00479 * 359.97438 * 16 15 2 18 18 C 1.47191 * 119.99720 * 179.97438 * 16 15 2 19 19 C 1.36012 * 123.46074 * 355.77572 * 18 16 15 20 20 S 1.70446 * 110.81682 * 179.97438 * 19 18 16 21 21 C 1.75502 * 92.44501 * 0.02562 * 20 19 18 22 22 C 1.32770 * 110.57866 * 359.73379 * 21 20 19 23 23 C 1.50699 * 123.46243 * 180.24696 * 22 21 20 24 24 F 1.39904 * 109.46707 * 123.66214 * 23 22 21 25 25 F 1.39894 * 109.47372 * 243.66080 * 23 22 21 26 26 H 1.08992 * 109.47439 * 60.00313 * 1 2 3 27 27 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46810 * 300.00051 * 1 2 3 29 29 H 1.09002 * 109.46566 * 64.99735 * 4 2 1 30 30 H 1.09002 * 109.46691 * 305.00142 * 4 2 1 31 31 H 1.09000 * 109.47558 * 274.79363 * 6 5 4 32 32 H 1.09004 * 109.47314 * 34.79880 * 6 5 4 33 33 H 1.09004 * 109.47061 * 154.79168 * 6 5 4 34 34 H 0.97003 * 120.00748 * 179.97438 * 10 9 7 35 35 H 0.97000 * 119.99879 * 95.00056 * 15 2 1 36 36 H 1.08004 * 124.58977 * 0.02562 * 19 18 16 37 37 H 1.08005 * 124.71098 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.46822 * 3.66207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7613 7 6 4.0851 -1.9157 -0.6023 8 1 3.5942 -2.4136 0.2209 9 6 5.3116 -2.3767 -1.0602 10 7 6.0628 -3.1299 -0.2849 11 14 5.8964 -1.9283 -2.7766 12 1 6.6347 -0.6408 -2.7275 13 1 6.7945 -2.9947 -3.2880 14 1 4.7248 -1.7930 -3.6790 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3571 17 8 1.8581 1.1621 2.4117 18 6 2.6373 -0.7121 3.5591 19 6 2.9013 -2.0457 3.5998 20 16 3.4512 -2.5074 5.1456 21 6 3.3254 -0.8691 5.7623 22 6 2.8923 -0.0459 4.8149 23 6 2.6841 1.4312 5.0291 24 9 3.4369 2.1487 4.0933 25 9 1.3285 1.7388 4.8716 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7517 -0.1583 -2.1369 30 1 1.6054 -1.7198 -1.2951 31 1 4.4719 0.0540 -2.8275 32 1 3.8467 1.1981 -1.6156 33 1 5.3050 0.2394 -1.2654 34 1 6.9198 -3.4524 -0.6050 35 1 2.2492 -1.6317 1.1526 36 1 2.7799 -2.7205 2.7653 37 1 3.5711 -0.5710 6.7709 38 1 3.0033 1.7008 6.0358 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:40 Heat of formation + Delta-G solvation = -77.213496 kcal Electronic energy + Delta-G solvation = -25553.359744 eV Core-core repulsion = 21580.356131 eV Total energy + Delta-G solvation = -3973.003613 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.49625 -46.50763 -39.53393 -37.29012 -36.23534 -34.09073 -31.89173 -31.13336 -29.61781 -26.72452 -26.60643 -25.68224 -24.22649 -22.20422 -21.05992 -19.92814 -18.94776 -18.10367 -17.34743 -16.79577 -16.76628 -16.27437 -15.66071 -15.45388 -15.15341 -14.51766 -14.07331 -13.63240 -13.45243 -13.32027 -13.14125 -12.98130 -12.85561 -12.71136 -12.61696 -12.48416 -12.28522 -12.11012 -12.03098 -11.65126 -11.39550 -11.05005 -10.85820 -10.71681 -10.41441 -10.33331 -10.16572 -9.63727 -9.35913 -9.11991 -8.64200 -8.51957 -8.29952 -6.94225 -6.04885 -3.43963 0.82453 1.46074 1.83174 1.88236 3.33533 3.45669 3.49656 3.66014 3.86509 4.02290 4.42374 4.49879 4.62792 4.94718 4.98189 5.30194 5.31961 5.33484 5.36383 5.53037 5.64631 5.77668 5.83005 6.00602 6.03221 6.08203 6.13608 6.29700 6.32028 6.46053 6.52353 6.72220 6.80097 7.13911 7.90103 8.12434 8.23404 8.78519 8.89688 9.64734 10.02793 11.10513 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.005134 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.736341 B = 5452.906795 C = 6426.514534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 H 0.079 0.921 4 C 0.139 3.861 5 N -0.608 5.608 6 C 0.108 3.892 7 C -0.264 4.264 8 H 0.078 0.922 9 C 0.031 3.969 10 N -0.904 5.904 11 Si 0.892 3.108 12 H -0.288 1.288 13 H -0.305 1.305 14 H -0.276 1.276 15 N -0.691 5.691 16 C 0.570 3.430 17 O -0.535 6.535 18 C -0.126 4.126 19 C -0.197 4.197 20 S 0.214 5.786 21 C -0.211 4.211 22 C -0.139 4.139 23 C 0.346 3.654 24 F -0.187 7.187 25 F -0.192 7.192 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.007 0.993 32 H 0.031 0.969 33 H 0.056 0.944 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.179 0.821 37 H 0.174 0.826 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 2.591 11.453 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.097 0.903 4 C 0.012 3.988 5 N -0.331 5.331 6 C -0.037 4.037 7 C -0.393 4.393 8 H 0.095 0.905 9 C -0.169 4.169 10 N -0.546 5.546 11 Si 0.722 3.278 12 H -0.215 1.215 13 H -0.233 1.233 14 H -0.201 1.201 15 N -0.342 5.342 16 C 0.355 3.645 17 O -0.414 6.414 18 C -0.142 4.142 19 C -0.336 4.336 20 S 0.481 5.519 21 C -0.347 4.347 22 C -0.153 4.153 23 C 0.290 3.710 24 F -0.168 7.168 25 F -0.173 7.173 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.196 0.804 37 H 0.191 0.809 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.394 1.944 12.066 14.284 hybrid contribution 0.270 1.040 -1.819 2.112 sum -7.124 2.984 10.247 12.832 Atomic orbital electron populations 1.22124 0.96275 1.01543 1.01835 1.21733 0.92421 0.98229 0.86172 0.90284 1.21160 0.85121 0.98936 0.93584 1.44029 0.99885 1.20485 1.68716 1.21322 0.96024 0.90599 0.95754 1.18655 1.03725 1.05857 1.11044 0.90473 1.25333 0.97069 0.96798 0.97705 1.69830 1.11368 1.38009 1.35388 0.86819 0.77804 0.76341 0.86803 1.21496 1.23319 1.20138 1.45795 1.65545 1.14347 1.08520 1.17443 0.78059 0.86383 0.82647 1.90791 1.50669 1.14901 1.85042 1.20108 1.06609 0.92543 0.94979 1.25751 1.04349 0.99456 1.03998 1.83015 1.61321 1.06493 1.01023 1.25325 1.08015 0.97799 1.03557 1.20416 1.04998 0.96417 0.93491 1.19712 0.74433 0.85464 0.91422 1.93052 1.75665 1.79032 1.69052 1.93013 1.33835 1.93651 1.96785 0.92085 0.92824 0.92594 0.92746 0.92127 0.97558 0.95048 0.92505 0.92723 0.75972 0.80418 0.80863 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.96 16 3 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 4 C 0.14 2.58 5.34 -4.04 -0.02 2.56 16 5 N -0.61 -13.83 2.50 -181.12 -0.45 -14.28 16 6 C 0.11 2.39 8.44 59.84 0.51 2.89 16 7 C -0.26 -6.83 9.29 -15.06 -0.14 -6.97 16 8 H 0.08 2.01 6.16 -52.48 -0.32 1.69 16 9 C 0.03 0.86 5.20 -17.43 -0.09 0.77 16 10 N -0.90 -26.29 13.97 55.49 0.78 -25.52 16 11 Si 0.89 22.24 24.16 -169.99 -4.11 18.13 16 12 H -0.29 -7.09 6.80 56.52 0.38 -6.70 16 13 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 14 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 15 N -0.69 -12.84 4.46 -54.95 -0.24 -13.09 16 16 C 0.57 11.21 7.70 -12.62 -0.10 11.12 16 17 O -0.54 -11.75 12.68 5.25 0.07 -11.69 16 18 C -0.13 -2.16 5.97 -104.63 -0.62 -2.79 16 19 C -0.20 -2.94 10.38 29.93 0.31 -2.63 16 20 S 0.21 2.44 23.02 -107.50 -2.48 -0.03 16 21 C -0.21 -2.37 10.86 28.86 0.31 -2.06 16 22 C -0.14 -2.07 5.45 -104.06 -0.57 -2.63 16 23 C 0.35 5.07 4.97 36.01 0.18 5.25 16 24 F -0.19 -3.44 15.62 2.25 0.04 -3.40 16 25 F -0.19 -3.23 15.97 2.25 0.04 -3.20 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.06 1.09 8.04 -51.93 -0.42 0.67 16 31 H 0.01 0.14 5.61 -51.93 -0.29 -0.15 16 32 H 0.03 0.62 8.11 -51.93 -0.42 0.19 16 33 H 0.06 1.36 6.58 -51.93 -0.34 1.02 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.40 7.41 4.91 -40.82 -0.20 7.21 16 36 H 0.18 2.59 7.03 -52.48 -0.37 2.22 16 37 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.11 1.02 8.04 -51.93 -0.42 0.61 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -33.04 330.05 -5.92 -38.96 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.45 Total: 3.65 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.08 Total: 5.49 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.08 Total: -52.89 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.07 Total: -6.60 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.11 Total: 18.13 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.48 Total: -0.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.04 -5.92 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.252 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds