Wall clock time and date at job start Tue Mar 31 2020 11:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46960 * 2 1 4 4 C 1.53000 * 109.47422 * 239.99896 * 2 1 3 5 5 N 1.46494 * 109.47140 * 184.99560 * 4 2 1 6 6 C 1.46495 * 120.00151 * 269.99648 * 5 4 2 7 7 C 1.36937 * 119.99831 * 90.00503 * 5 4 2 8 8 H 1.08007 * 120.00019 * 328.48530 * 7 5 4 9 9 C 1.38807 * 120.00164 * 148.76312 * 7 5 4 10 10 N 1.31621 * 120.00269 * 159.40151 * 9 7 5 11 11 Si 1.86793 * 120.00033 * 339.40092 * 9 7 5 12 12 H 1.48500 * 109.47327 * 88.15858 * 11 9 7 13 13 H 1.48508 * 109.47245 * 208.15793 * 11 9 7 14 14 H 1.48500 * 109.47115 * 328.15662 * 11 9 7 15 15 N 1.46501 * 109.47468 * 119.99765 * 2 1 3 16 16 C 1.34780 * 119.99783 * 275.00541 * 15 2 1 17 17 O 1.21629 * 120.00479 * 359.97438 * 16 15 2 18 18 C 1.47191 * 119.99720 * 179.97438 * 16 15 2 19 19 C 1.36012 * 123.46074 * 355.77572 * 18 16 15 20 20 S 1.70446 * 110.81682 * 179.97438 * 19 18 16 21 21 C 1.75502 * 92.44501 * 0.02562 * 20 19 18 22 22 C 1.32770 * 110.57866 * 359.73379 * 21 20 19 23 23 C 1.50699 * 123.46243 * 180.24696 * 22 21 20 24 24 F 1.39904 * 109.46707 * 123.66214 * 23 22 21 25 25 F 1.39894 * 109.47372 * 243.66080 * 23 22 21 26 26 H 1.08992 * 109.47439 * 60.00313 * 1 2 3 27 27 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46810 * 300.00051 * 1 2 3 29 29 H 1.09002 * 109.46566 * 64.99735 * 4 2 1 30 30 H 1.09002 * 109.46691 * 305.00142 * 4 2 1 31 31 H 1.09000 * 109.47558 * 274.79363 * 6 5 4 32 32 H 1.09004 * 109.47314 * 34.79880 * 6 5 4 33 33 H 1.09004 * 109.47061 * 154.79168 * 6 5 4 34 34 H 0.97003 * 120.00748 * 179.97438 * 10 9 7 35 35 H 0.97000 * 119.99879 * 95.00056 * 15 2 1 36 36 H 1.08004 * 124.58977 * 0.02562 * 19 18 16 37 37 H 1.08005 * 124.71098 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.46822 * 3.66207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7613 7 6 4.0851 -1.9157 -0.6023 8 1 3.5942 -2.4136 0.2209 9 6 5.3116 -2.3767 -1.0602 10 7 6.0628 -3.1299 -0.2849 11 14 5.8964 -1.9283 -2.7766 12 1 6.6347 -0.6408 -2.7275 13 1 6.7945 -2.9947 -3.2880 14 1 4.7248 -1.7930 -3.6790 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3571 17 8 1.8581 1.1621 2.4117 18 6 2.6373 -0.7121 3.5591 19 6 2.9013 -2.0457 3.5998 20 16 3.4512 -2.5074 5.1456 21 6 3.3254 -0.8691 5.7623 22 6 2.8923 -0.0459 4.8149 23 6 2.6841 1.4312 5.0291 24 9 3.4369 2.1487 4.0933 25 9 1.3285 1.7388 4.8716 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7517 -0.1583 -2.1369 30 1 1.6054 -1.7198 -1.2951 31 1 4.4719 0.0540 -2.8275 32 1 3.8467 1.1981 -1.6156 33 1 5.3050 0.2394 -1.2654 34 1 6.9198 -3.4524 -0.6050 35 1 2.2492 -1.6317 1.1526 36 1 2.7799 -2.7205 2.7653 37 1 3.5711 -0.5710 6.7709 38 1 3.0033 1.7008 6.0358 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:40 Heat of formation + Delta-G solvation = -99.334722 kcal Electronic energy + Delta-G solvation = -25554.318992 eV Core-core repulsion = 21580.356131 eV Total energy + Delta-G solvation = -3973.962861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.095 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.68762 -47.73465 -40.93584 -38.61076 -37.75475 -35.75203 -33.68059 -32.61555 -30.88137 -28.34800 -27.66586 -27.53076 -25.45970 -23.73073 -22.55232 -21.38278 -20.23217 -19.30538 -18.74318 -18.32851 -17.98772 -17.57892 -17.25346 -16.87801 -16.62026 -16.11765 -15.67746 -15.21589 -14.97401 -14.60472 -14.40407 -14.30643 -14.18277 -14.10266 -14.05970 -13.90228 -13.79411 -13.48526 -13.46675 -13.02132 -12.69456 -12.51092 -12.41969 -12.22354 -12.12912 -11.92616 -11.76735 -11.61667 -10.82641 -10.68016 -10.17187 -9.92617 -9.40607 -8.83586 -8.15364 -5.49893 -0.25375 0.50384 0.70500 0.81666 1.34555 1.42387 1.50719 2.27143 2.44446 2.49402 3.06757 3.08168 3.39680 3.44466 3.56890 3.91717 4.08278 4.13123 4.21320 4.35624 4.39098 4.44611 4.54790 4.55381 4.66446 4.72498 4.84084 4.92563 4.93787 4.98645 5.05047 5.16128 5.36293 5.69288 5.90798 6.14921 6.67420 6.93279 7.35351 7.63927 8.04650 9.02843 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.005134 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.736341 B = 5452.906795 C = 6426.514534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 H 0.055 0.945 4 C 0.140 3.860 5 N -0.620 5.620 6 C 0.107 3.893 7 C -0.242 4.242 8 H 0.068 0.932 9 C -0.023 4.023 10 N -0.945 5.945 11 Si 0.940 3.060 12 H -0.286 1.286 13 H -0.314 1.314 14 H -0.267 1.267 15 N -0.693 5.693 16 C 0.560 3.440 17 O -0.568 6.568 18 C -0.162 4.162 19 C -0.219 4.219 20 S 0.282 5.718 21 C -0.185 4.185 22 C -0.175 4.175 23 C 0.333 3.667 24 F -0.216 7.216 25 F -0.211 7.211 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.014 0.986 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.259 0.741 35 H 0.402 0.598 36 H 0.171 0.829 37 H 0.222 0.778 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 2.457 12.411 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.073 0.927 4 C 0.014 3.986 5 N -0.344 5.344 6 C -0.037 4.037 7 C -0.372 4.372 8 H 0.086 0.914 9 C -0.219 4.219 10 N -0.590 5.590 11 Si 0.771 3.229 12 H -0.213 1.213 13 H -0.243 1.243 14 H -0.192 1.192 15 N -0.344 5.344 16 C 0.346 3.654 17 O -0.450 6.450 18 C -0.179 4.179 19 C -0.357 4.357 20 S 0.550 5.450 21 C -0.321 4.321 22 C -0.187 4.187 23 C 0.277 3.723 24 F -0.197 7.197 25 F -0.192 7.192 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.239 0.761 36 H 0.188 0.812 37 H 0.239 0.761 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.060 1.825 13.001 15.405 hybrid contribution 0.414 1.037 -2.014 2.303 sum -7.646 2.862 10.987 13.688 Atomic orbital electron populations 1.22007 0.93655 1.02581 1.02264 1.21686 0.94398 0.96570 0.85630 0.92705 1.21350 0.82414 0.99971 0.94857 1.44199 1.01808 1.19760 1.68609 1.21314 0.95159 0.91620 0.95652 1.18787 1.02990 1.05443 1.09996 0.91435 1.25853 0.97913 0.97901 1.00265 1.69930 1.11922 1.40532 1.36658 0.86026 0.77424 0.75714 0.83785 1.21284 1.24284 1.19234 1.45879 1.65456 1.14243 1.08789 1.17960 0.77563 0.86248 0.83621 1.90752 1.52262 1.16218 1.85719 1.20187 1.08860 0.93570 0.95281 1.25890 1.04654 0.98905 1.06253 1.82793 1.58799 1.05796 0.97635 1.25892 1.04413 0.97061 1.04724 1.20502 1.07688 0.97006 0.93520 1.20487 0.73246 0.85384 0.93138 1.92982 1.76324 1.79778 1.70626 1.92962 1.35448 1.93810 1.96980 0.89627 0.91433 0.94146 0.90045 0.91317 0.96827 0.92660 0.94929 0.93192 0.76071 0.81180 0.76111 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.48 71.98 0.68 -3.42 16 2 C 0.12 4.34 2.88 44.99 0.13 4.47 16 3 H 0.05 2.19 7.58 -2.38 -0.02 2.18 16 4 C 0.14 4.94 5.34 86.38 0.46 5.40 16 5 N -0.62 -27.66 2.50 -726.95 -1.82 -29.48 16 6 C 0.11 4.63 8.44 127.77 1.08 5.71 16 7 C -0.24 -12.55 9.29 84.03 0.78 -11.77 16 8 H 0.07 3.58 6.16 -2.91 -0.02 3.56 16 9 C -0.02 -1.29 5.20 84.86 0.44 -0.85 16 10 N -0.95 -56.02 13.97 21.65 0.30 -55.71 16 11 Si 0.94 45.86 24.16 68.60 1.66 47.51 16 12 H -0.29 -13.70 6.80 99.48 0.68 -13.02 16 13 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 14 H -0.27 -12.51 6.87 99.48 0.68 -11.83 16 15 N -0.69 -26.27 4.46 -446.01 -1.99 -28.26 16 16 C 0.56 22.74 7.70 86.59 0.67 23.40 16 17 O -0.57 -25.91 12.68 -4.12 -0.05 -25.97 16 18 C -0.16 -5.61 5.97 -19.87 -0.12 -5.73 16 19 C -0.22 -6.48 10.38 67.30 0.70 -5.79 16 20 S 0.28 5.72 23.02 -56.49 -1.30 4.41 16 21 C -0.19 -3.53 10.86 66.64 0.72 -2.81 16 22 C -0.17 -4.96 5.45 -19.46 -0.11 -5.06 16 23 C 0.33 9.43 4.97 71.24 0.35 9.78 16 24 F -0.22 -8.05 15.62 44.97 0.70 -7.35 16 25 F -0.21 -7.14 15.97 44.97 0.72 -6.42 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 30 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 31 H 0.01 0.58 5.61 -2.39 -0.01 0.57 16 32 H 0.05 2.10 8.11 -2.38 -0.02 2.08 16 33 H 0.03 1.54 6.58 -2.38 -0.02 1.53 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.40 15.16 4.91 -92.71 -0.46 14.70 16 36 H 0.17 5.12 7.03 -2.91 -0.02 5.10 16 37 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.17 2.62 8.04 -2.39 -0.02 2.60 16 Total: -1.00 -74.36 330.05 4.61 -69.76 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.60 Total: 18.17 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.79 Total: 13.34 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -3.51 Total: -113.45 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 9 Polarization: -15.19 SS G_CDS: 1.42 Total: -13.77 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.66 Total: 47.51 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.30 Total: 4.41 kcal Total: -74.36 4.61 -69.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.579 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds