Wall clock time and date at job start Tue Mar 31 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48494 * 109.47468 * 270.00435 * 3 2 1 5 5 H 1.48497 * 109.47066 * 30.00743 * 3 2 1 6 6 H 1.48499 * 109.46610 * 150.00247 * 3 2 1 7 7 C 1.37871 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47306 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47175 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99832 * 180.02562 * 12 11 10 14 14 O 1.21490 * 119.99795 * 5.07509 * 13 12 11 15 15 C 1.48325 * 119.99989 * 185.07888 * 13 12 11 16 16 C 1.36575 * 120.81101 * 353.89529 * 15 13 12 17 17 C 1.41598 * 120.02827 * 180.02562 * 16 15 13 18 18 O 1.21836 * 119.16030 * 179.97438 * 17 16 15 19 19 N 1.34395 * 121.66902 * 0.02562 * 17 16 15 20 20 H 0.96999 * 119.40465 * 179.97438 * 19 17 16 21 21 C 1.37855 * 121.19422 * 359.97438 * 19 17 16 22 22 C 1.39072 * 120.85687 * 180.02562 * 21 19 17 23 23 C 1.38055 * 119.74022 * 180.23098 * 22 21 19 24 24 F 1.35096 * 119.70326 * 179.74527 * 23 22 21 25 25 C 1.39134 * 120.60288 * 359.44115 * 23 22 21 26 26 C 1.36553 * 120.52847 * 0.58707 * 25 23 22 27 27 C 1.39764 * 119.78166 * 359.69804 * 26 25 23 28 28 H 0.96994 * 120.00379 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46764 * 60.00263 * 9 7 2 30 30 H 1.08998 * 109.46758 * 300.00465 * 9 7 2 31 31 H 1.09007 * 109.47171 * 59.99820 * 10 9 7 32 32 H 1.09003 * 109.47353 * 300.00271 * 10 9 7 33 33 H 1.09002 * 109.46753 * 59.99958 * 11 10 9 34 34 H 1.09003 * 109.47095 * 300.00380 * 11 10 9 35 35 H 0.96995 * 120.00074 * 0.02562 * 12 11 10 36 36 H 1.08001 * 119.98279 * 0.02562 * 16 15 13 37 37 H 1.08004 * 120.13640 * 359.95435 * 22 21 19 38 38 H 1.08003 * 119.73324 * 180.28743 * 25 23 22 39 39 H 1.08009 * 120.10902 * 179.67252 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9832 -7.3713 -0.0015 14 8 0.7927 -7.5946 -0.0959 15 6 2.9422 -8.4970 0.1128 16 6 4.2893 -8.2729 0.0954 17 6 5.1900 -9.3600 0.2051 18 8 6.3886 -9.1420 0.1873 19 7 4.7562 -10.6261 0.3275 20 1 5.4023 -11.3459 0.4000 21 6 3.4096 -10.9203 0.3518 22 6 2.9685 -12.2330 0.4793 23 6 1.6145 -12.5019 0.4962 24 9 1.1869 -13.7779 0.6148 25 6 0.6862 -11.4701 0.3986 26 6 1.0995 -10.1748 0.2723 27 6 2.4658 -9.8814 0.2471 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.8540 -5.0446 -0.8914 34 1 0.8533 -5.0451 0.8886 35 1 3.3860 -5.9233 0.0005 36 1 4.6677 -7.2661 -0.0022 37 1 3.6823 -13.0395 0.5601 38 1 -0.3698 -11.6961 0.4180 39 1 0.3730 -9.3797 0.1917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172400708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:52 Heat of formation + Delta-G solvation = -80.804537 kcal Electronic energy + Delta-G solvation = -24818.104648 eV Core-core repulsion = 20832.961670 eV Total energy + Delta-G solvation = -3985.142978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.117 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.44763 -41.85377 -39.82040 -38.93518 -35.89821 -35.64676 -34.59545 -33.40145 -31.43256 -30.62208 -29.73933 -27.24101 -25.39005 -23.97486 -23.62970 -22.89286 -21.20301 -20.43977 -19.28499 -18.87050 -18.27365 -17.49242 -16.74852 -16.37572 -16.32786 -16.11114 -15.87147 -15.73598 -15.44863 -15.12030 -14.50788 -14.42932 -14.22427 -14.03847 -13.73039 -13.45355 -13.29995 -12.50522 -12.33281 -12.06000 -11.93168 -11.88942 -11.45477 -10.95116 -10.91556 -10.81217 -10.74357 -10.63788 -10.02842 -9.96563 -9.49218 -9.19475 -9.18516 -9.03477 -8.55408 -8.41782 -6.06504 -4.09802 -0.33837 0.54555 0.93618 2.32362 2.40509 2.73152 2.84815 3.28431 3.35176 3.37879 3.41212 3.62952 3.93106 4.01463 4.09922 4.40337 4.41978 4.46444 4.63872 4.89244 5.02918 5.20761 5.29626 5.35064 5.47703 5.55190 5.62725 5.73126 5.86483 6.01525 6.05807 6.18725 6.28519 6.45793 6.47034 6.66205 6.89081 7.32508 7.42883 7.56961 7.68194 7.91269 7.95368 8.32281 8.96711 9.54930 11.04723 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002297 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.240785 B =12188.618618 C =13397.765287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.709 5.709 13 C 0.551 3.449 14 O -0.523 6.523 15 C -0.015 4.015 16 C -0.173 4.173 17 C 0.540 3.460 18 O -0.526 6.526 19 N -0.626 5.626 20 H 0.418 0.582 21 C 0.213 3.787 22 C -0.210 4.210 23 C 0.159 3.841 24 F -0.131 7.131 25 C -0.186 4.186 26 C -0.020 4.020 27 C -0.121 4.121 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -26.438 0.995 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.359 5.359 13 C 0.336 3.664 14 O -0.402 6.402 15 C -0.021 4.021 16 C -0.196 4.196 17 C 0.336 3.664 18 O -0.404 6.404 19 N -0.265 5.265 20 H 0.257 0.743 21 C 0.110 3.890 22 C -0.231 4.231 23 C 0.138 3.862 24 F -0.109 7.109 25 C -0.206 4.206 26 C -0.038 4.038 27 C -0.125 4.125 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.879 -26.149 0.922 26.616 hybrid contribution 1.148 0.392 0.057 1.215 sum 6.027 -25.757 0.979 26.470 Atomic orbital electron populations 1.69956 1.06062 1.26773 1.50464 1.25023 0.94864 0.99341 0.95200 0.86576 0.79816 0.83376 0.78137 1.20631 1.21192 1.19867 1.21189 0.93022 0.90887 1.51092 0.92598 1.19027 0.93791 0.90778 0.97729 1.21931 0.99908 0.93099 1.01188 1.21823 0.91695 0.84627 1.02624 1.46213 1.11512 1.05524 1.72640 1.18085 0.87690 0.82804 0.77852 1.90602 1.16229 1.83726 1.49609 1.21352 0.93613 0.93094 0.94058 1.22643 0.92075 1.00514 1.04327 1.16988 0.89267 0.82409 0.77783 1.90994 1.15887 1.83597 1.49935 1.43405 1.06162 1.10609 1.66299 0.74286 1.17470 0.83104 0.92954 0.95432 1.20464 0.95195 0.95294 1.12170 1.17632 0.91922 0.79004 0.97618 1.91541 1.90435 1.36240 1.92698 1.21006 1.00551 0.91976 1.07069 1.21846 0.94980 0.97565 0.89390 1.18301 0.93545 0.89938 1.10703 0.92879 0.96189 0.96201 0.92486 0.92487 0.90976 0.91098 0.76282 0.81946 0.83506 0.83705 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.11 1.76 5.68 -4.04 -0.02 1.73 16 12 N -0.71 -8.70 5.51 -61.10 -0.34 -9.03 16 13 C 0.55 6.88 7.76 -12.11 -0.09 6.78 16 14 O -0.52 -7.75 13.62 5.37 0.07 -7.68 16 15 C -0.02 -0.16 6.04 -102.79 -0.62 -0.78 16 16 C -0.17 -1.67 9.46 -38.90 -0.37 -2.04 16 17 C 0.54 5.66 7.67 -15.15 -0.12 5.54 16 18 O -0.53 -7.14 17.87 5.07 0.09 -7.05 16 19 N -0.63 -4.93 5.29 -12.52 -0.07 -4.99 16 20 H 0.42 2.29 8.75 -40.82 -0.36 1.93 16 21 C 0.21 1.74 6.65 -83.90 -0.56 1.18 16 22 C -0.21 -1.42 9.88 -39.34 -0.39 -1.81 16 23 C 0.16 1.22 7.29 -39.32 -0.29 0.94 16 24 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 25 C -0.19 -1.47 9.95 -39.86 -0.40 -1.87 16 26 C -0.02 -0.19 9.29 -39.62 -0.37 -0.56 16 27 C -0.12 -1.18 5.89 -104.82 -0.62 -1.80 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.40 3.97 6.59 -40.82 -0.27 3.70 16 36 H 0.16 1.31 6.45 -52.49 -0.34 0.97 16 37 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.18 1.93 5.05 -52.48 -0.26 1.67 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -32.28 341.92 -8.01 -40.30 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.15 Total: 1.27 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -4.53 Total: -7.57 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.33 Total: -39.49 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.16 Total: -14.73 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.28 -8.01 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172400708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.508 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds