Wall clock time and date at job start Tue Mar 31 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48494 * 109.47468 * 270.00435 * 3 2 1 5 5 H 1.48497 * 109.47066 * 30.00743 * 3 2 1 6 6 H 1.48499 * 109.46610 * 150.00247 * 3 2 1 7 7 C 1.37871 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47306 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47175 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99832 * 180.02562 * 12 11 10 14 14 O 1.21490 * 119.99795 * 5.07509 * 13 12 11 15 15 C 1.48325 * 119.99989 * 185.07888 * 13 12 11 16 16 C 1.36575 * 120.81101 * 353.89529 * 15 13 12 17 17 C 1.41598 * 120.02827 * 180.02562 * 16 15 13 18 18 O 1.21836 * 119.16030 * 179.97438 * 17 16 15 19 19 N 1.34395 * 121.66902 * 0.02562 * 17 16 15 20 20 H 0.96999 * 119.40465 * 179.97438 * 19 17 16 21 21 C 1.37855 * 121.19422 * 359.97438 * 19 17 16 22 22 C 1.39072 * 120.85687 * 180.02562 * 21 19 17 23 23 C 1.38055 * 119.74022 * 180.23098 * 22 21 19 24 24 F 1.35096 * 119.70326 * 179.74527 * 23 22 21 25 25 C 1.39134 * 120.60288 * 359.44115 * 23 22 21 26 26 C 1.36553 * 120.52847 * 0.58707 * 25 23 22 27 27 C 1.39764 * 119.78166 * 359.69804 * 26 25 23 28 28 H 0.96994 * 120.00379 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46764 * 60.00263 * 9 7 2 30 30 H 1.08998 * 109.46758 * 300.00465 * 9 7 2 31 31 H 1.09007 * 109.47171 * 59.99820 * 10 9 7 32 32 H 1.09003 * 109.47353 * 300.00271 * 10 9 7 33 33 H 1.09002 * 109.46753 * 59.99958 * 11 10 9 34 34 H 1.09003 * 109.47095 * 300.00380 * 11 10 9 35 35 H 0.96995 * 120.00074 * 0.02562 * 12 11 10 36 36 H 1.08001 * 119.98279 * 0.02562 * 16 15 13 37 37 H 1.08004 * 120.13640 * 359.95435 * 22 21 19 38 38 H 1.08003 * 119.73324 * 180.28743 * 25 23 22 39 39 H 1.08009 * 120.10902 * 179.67252 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9832 -7.3713 -0.0015 14 8 0.7927 -7.5946 -0.0959 15 6 2.9422 -8.4970 0.1128 16 6 4.2893 -8.2729 0.0954 17 6 5.1900 -9.3600 0.2051 18 8 6.3886 -9.1420 0.1873 19 7 4.7562 -10.6261 0.3275 20 1 5.4023 -11.3459 0.4000 21 6 3.4096 -10.9203 0.3518 22 6 2.9685 -12.2330 0.4793 23 6 1.6145 -12.5019 0.4962 24 9 1.1869 -13.7779 0.6148 25 6 0.6862 -11.4701 0.3986 26 6 1.0995 -10.1748 0.2723 27 6 2.4658 -9.8814 0.2471 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.8540 -5.0446 -0.8914 34 1 0.8533 -5.0451 0.8886 35 1 3.3860 -5.9233 0.0005 36 1 4.6677 -7.2661 -0.0022 37 1 3.6823 -13.0395 0.5601 38 1 -0.3698 -11.6961 0.4180 39 1 0.3730 -9.3797 0.1917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172400708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:51 Heat of formation + Delta-G solvation = -101.863517 kcal Electronic energy + Delta-G solvation = -24819.017834 eV Core-core repulsion = 20832.961670 eV Total energy + Delta-G solvation = -3986.056164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.06591 -42.61522 -40.83360 -39.70420 -37.08199 -36.57336 -35.52771 -35.07049 -33.02916 -31.36905 -30.47529 -28.81731 -26.55297 -24.93695 -24.40844 -24.14303 -22.40352 -21.81292 -20.04040 -19.55576 -19.13438 -18.64785 -18.12509 -17.49571 -17.08062 -16.81443 -16.76118 -16.70938 -16.45871 -16.43407 -15.97270 -15.42933 -15.18642 -14.99914 -14.59198 -14.28083 -14.15621 -14.06546 -13.75523 -13.52982 -13.18961 -12.75696 -12.70505 -12.52632 -12.37185 -12.19499 -11.77907 -11.66438 -11.53260 -11.50594 -11.21614 -10.85419 -10.53627 -10.23805 -9.76944 -9.26564 -8.18490 -6.29103 -1.10357 -0.14541 0.24736 1.43025 1.43492 1.54364 1.55448 1.64603 1.81942 1.92581 2.43007 2.66778 2.95304 3.15739 3.20902 3.24673 3.40474 3.72300 3.78406 4.02114 4.10349 4.23955 4.25979 4.33129 4.50492 4.57145 4.68497 4.82000 4.92952 4.96542 5.11564 5.18563 5.21129 5.34413 5.47216 5.54290 5.56171 5.73792 5.75586 5.86689 6.23688 6.33284 6.68690 6.88685 6.96678 7.40447 8.93373 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002297 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.240785 B =12188.618618 C =13397.765287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.129 3.871 12 N -0.701 5.701 13 C 0.552 3.448 14 O -0.549 6.549 15 C -0.016 4.016 16 C -0.166 4.166 17 C 0.540 3.460 18 O -0.561 6.561 19 N -0.610 5.610 20 H 0.431 0.569 21 C 0.211 3.789 22 C -0.192 4.192 23 C 0.154 3.846 24 F -0.131 7.131 25 C -0.180 4.180 26 C -0.034 4.034 27 C -0.134 4.134 28 H 0.263 0.737 29 H -0.005 1.005 30 H -0.005 1.005 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.415 0.585 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 -27.802 1.143 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.014 4.014 10 C -0.144 4.144 11 C 0.006 3.994 12 N -0.352 5.352 13 C 0.339 3.661 14 O -0.429 6.429 15 C -0.022 4.022 16 C -0.188 4.188 17 C 0.336 3.664 18 O -0.442 6.442 19 N -0.250 5.250 20 H 0.273 0.727 21 C 0.108 3.892 22 C -0.213 4.213 23 C 0.134 3.866 24 F -0.109 7.109 25 C -0.199 4.199 26 C -0.052 4.052 27 C -0.138 4.138 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.253 0.747 36 H 0.194 0.806 37 H 0.195 0.805 38 H 0.177 0.823 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.668 -27.558 1.073 28.374 hybrid contribution 0.517 0.705 0.015 0.874 sum 7.185 -26.853 1.088 27.819 Atomic orbital electron populations 1.70094 1.07808 1.27735 1.51782 1.25971 0.95724 1.03380 0.94915 0.85470 0.78720 0.78605 0.78395 1.19930 1.21106 1.18575 1.21694 0.93730 0.92133 1.50263 0.91683 1.18938 0.94430 0.92719 0.95316 1.21636 0.98575 0.91913 1.02282 1.21389 0.91649 0.84592 1.01805 1.45955 1.11742 1.04817 1.72735 1.18355 0.87714 0.83073 0.76972 1.90611 1.17515 1.84145 1.50582 1.21098 0.93251 0.92661 0.95177 1.22761 0.91539 1.01212 1.03317 1.17027 0.88726 0.83158 0.77503 1.90986 1.17096 1.84177 1.51990 1.43237 1.06405 1.10352 1.64965 0.72733 1.17438 0.82752 0.93110 0.95855 1.20710 0.95408 0.95356 1.09847 1.17673 0.92261 0.78860 0.97799 1.91548 1.90490 1.36185 1.92714 1.21144 1.01562 0.91445 1.05748 1.21670 0.94706 0.97850 0.90992 1.18415 0.94082 0.90021 1.11243 0.92843 0.98698 0.98641 0.91289 0.91349 0.92049 0.91943 0.74668 0.80580 0.80511 0.82301 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.54 -29.32 9.11 25.60 0.23 -29.08 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.11 -3.77 5.27 30.59 0.16 -3.61 16 11 C 0.13 3.97 5.68 86.38 0.49 4.46 16 12 N -0.70 -16.62 5.51 -465.51 -2.56 -19.18 16 13 C 0.55 13.58 7.76 86.93 0.67 14.26 16 14 O -0.55 -16.48 13.62 -3.69 -0.05 -16.53 16 15 C -0.02 -0.31 6.04 -18.68 -0.11 -0.43 16 16 C -0.17 -2.96 9.46 22.71 0.21 -2.74 16 17 C 0.54 10.45 7.67 85.13 0.65 11.11 16 18 O -0.56 -14.57 17.87 -4.78 -0.09 -14.66 16 19 N -0.61 -8.27 5.29 -311.91 -1.65 -9.92 16 20 H 0.43 3.60 8.75 -92.71 -0.81 2.78 16 21 C 0.21 2.98 6.65 39.01 0.26 3.24 16 22 C -0.19 -2.04 9.88 22.43 0.22 -1.82 16 23 C 0.15 2.02 7.29 22.44 0.16 2.18 16 24 F -0.13 -1.81 17.26 44.97 0.78 -1.03 16 25 C -0.18 -2.58 9.95 22.09 0.22 -2.36 16 26 C -0.03 -0.63 9.29 22.24 0.21 -0.42 16 27 C -0.13 -2.46 5.89 -19.99 -0.12 -2.58 16 28 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 29 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.42 7.52 6.59 -92.71 -0.61 6.91 16 36 H 0.18 2.52 6.45 -2.91 -0.02 2.50 16 37 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.17 3.61 5.05 -2.91 -0.01 3.60 16 Total: -1.00 -70.11 341.92 2.32 -67.79 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -0.29 Total: 10.06 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.88 Total: -6.13 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -3.93 Total: -84.70 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.14 Total: -31.19 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.78 Total: -1.03 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -70.11 2.32 -67.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172400708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.076 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds