Wall clock time and date at job start Tue Mar 31 2020 11:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21281 * 119.99980 * 179.86464 * 13 12 11 15 15 C 1.50696 * 119.99792 * 359.87006 * 13 12 11 16 16 N 1.46500 * 109.46922 * 179.97438 * 15 13 12 17 17 C 1.36911 * 125.06588 * 264.69704 * 16 15 13 18 18 C 1.34200 * 109.92174 * 179.85043 * 17 16 15 19 19 C 1.46533 * 107.00360 * 0.40072 * 18 17 16 20 20 C 1.39631 * 133.99112 * 179.73276 * 19 18 17 21 21 C 1.36600 * 119.80342 * 180.02562 * 20 19 18 22 22 C 1.39042 * 120.49787 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.69106 * 179.97438 * 22 21 20 24 24 C 1.37940 * 120.61117 * 0.02790 * 22 21 20 25 25 C 1.37681 * 125.06857 * 84.99794 * 16 15 13 26 26 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 29 29 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 30 30 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 31 31 H 1.08997 * 109.47166 * 299.99767 * 15 13 12 32 32 H 1.08996 * 109.47290 * 59.99858 * 15 13 12 33 33 H 1.08001 * 125.03452 * 0.02562 * 17 16 15 34 34 H 1.08005 * 126.49891 * 180.16814 * 18 17 16 35 35 H 1.08006 * 120.09828 * 359.97438 * 20 19 18 36 36 H 1.07998 * 119.75420 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.11584 * 179.97438 * 24 22 21 38 38 H 1.08999 * 113.76805 * 221.15228 * 26 12 11 39 39 H 1.09001 * 113.77518 * 89.75919 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9074 -3.3080 -0.9006 15 6 7.0444 -1.5307 -2.4472 16 7 8.3825 -2.0773 -2.6860 17 6 9.5314 -1.6346 -2.0872 18 6 10.5794 -2.3503 -2.5233 19 6 10.0613 -3.3253 -3.4868 20 6 10.6481 -4.3233 -4.2674 21 6 9.8701 -5.0865 -5.0909 22 6 8.4971 -4.8776 -5.1578 23 9 7.7431 -5.6416 -5.9784 24 6 7.8978 -3.8969 -4.3951 25 6 8.6730 -3.1088 -3.5504 26 6 4.1313 -2.6024 -0.0480 27 1 -0.4850 0.8401 0.0004 28 1 3.7023 0.5402 1.0280 29 1 3.4726 -1.2571 -2.2148 30 1 4.5870 0.0025 -1.5238 31 1 6.4704 -1.5566 -3.3734 32 1 7.1295 -0.5006 -2.1012 33 1 9.5857 -0.8306 -1.3681 34 1 11.6100 -2.2282 -2.2241 35 1 11.7141 -4.4909 -4.2208 36 1 10.3248 -5.8580 -5.6946 37 1 6.8307 -3.7412 -4.4536 38 1 4.5862 -2.9145 0.8921 39 1 3.4719 -3.3584 -0.4745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649856450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:33 Heat of formation + Delta-G solvation = -5.736457 kcal Electronic energy + Delta-G solvation = -25998.178585 eV Core-core repulsion = 22016.290803 eV Total energy + Delta-G solvation = -3981.887782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.88584 -41.50506 -39.85423 -37.91090 -36.73708 -34.61319 -32.95682 -32.66013 -30.87596 -29.33572 -28.57875 -27.08587 -25.67073 -25.12528 -23.02423 -21.83691 -20.84645 -20.19593 -18.93581 -17.63473 -17.60239 -17.21165 -16.97482 -16.40971 -16.26901 -15.65277 -15.47348 -15.42007 -14.94636 -14.33632 -14.10810 -13.82110 -13.73575 -13.64599 -13.35080 -13.25675 -12.78633 -12.74715 -12.63916 -12.35153 -12.03057 -11.97776 -11.42878 -11.36317 -11.11016 -11.06149 -10.73784 -10.25834 -10.03696 -9.75465 -9.46515 -9.14869 -8.85477 -8.26823 -8.21652 -7.77257 -6.52416 -4.59710 0.89566 1.37351 2.37029 2.65915 2.74408 2.87938 2.89693 3.04887 3.25023 3.67540 3.92079 4.20514 4.42724 4.47800 4.58283 4.62298 4.69356 4.89274 4.96698 4.97546 5.08017 5.30928 5.34728 5.42204 5.61023 5.76641 5.83850 5.87661 5.95118 6.04428 6.05395 6.19390 6.22411 6.26196 6.45911 6.61403 6.64990 7.04975 7.06972 7.10296 7.91657 8.04040 8.31404 8.38285 8.51870 9.04033 10.59734 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.003194 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.052898 B = 8763.825642 C = 9371.662770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.080 3.920 3 Si 0.859 3.141 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.092 0.908 9 C 0.197 3.803 10 O -0.554 6.554 11 C 0.058 3.942 12 N -0.632 5.632 13 C 0.509 3.491 14 O -0.539 6.539 15 C 0.094 3.906 16 N -0.463 5.463 17 C 0.065 3.935 18 C -0.200 4.200 19 C -0.118 4.118 20 C -0.042 4.042 21 C -0.181 4.181 22 C 0.114 3.886 23 F -0.141 7.141 24 C -0.160 4.160 25 C 0.134 3.866 26 C 0.130 3.870 27 H 0.272 0.728 28 H 0.353 0.647 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.170 0.830 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.144 -0.802 -8.801 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.125 4.125 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.182 1.182 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.110 0.890 9 C 0.156 3.844 10 O -0.364 6.364 11 C -0.065 4.065 12 N -0.367 5.367 13 C 0.296 3.704 14 O -0.416 6.416 15 C -0.032 4.032 16 N -0.145 5.145 17 C -0.059 4.059 18 C -0.225 4.225 19 C -0.122 4.122 20 C -0.061 4.061 21 C -0.201 4.201 22 C 0.094 3.906 23 F -0.119 7.119 24 C -0.181 4.181 25 C 0.027 3.973 26 C 0.008 3.992 27 H 0.082 0.918 28 H 0.205 0.795 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.187 0.813 34 H 0.167 0.833 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.461 -1.645 -8.420 19.455 hybrid contribution -0.394 1.415 -0.222 1.486 sum 17.066 -0.229 -8.642 19.131 Atomic orbital electron populations 1.69853 1.06099 1.27738 1.47192 1.25020 0.94923 0.99020 0.93568 0.87342 0.80342 0.84374 0.79235 1.19257 1.18238 1.20840 1.21217 0.87541 0.95788 1.53115 0.89019 1.20520 0.92697 0.87869 0.83291 1.86471 1.67516 1.25700 1.56737 1.24802 0.88716 0.90007 1.02942 1.50195 1.11910 1.32768 1.41831 1.20345 0.81408 0.85245 0.83426 1.90734 1.65351 1.29265 1.56294 1.21581 0.82445 0.98740 1.00415 1.43457 1.05989 1.29302 1.35733 1.21854 0.84023 1.00910 0.99101 1.21601 0.98667 0.99398 1.02818 1.19222 0.92090 0.99654 1.01279 1.20057 0.99548 0.92840 0.93611 1.20552 0.91748 1.03762 1.04063 1.17121 0.88972 0.92017 0.92489 1.91487 1.76316 1.73926 1.70200 1.19793 0.99966 0.98244 1.00134 1.17723 0.93961 0.91387 0.94185 1.23326 0.87092 0.97146 0.91611 0.91772 0.79521 0.88329 0.91090 0.86834 0.86264 0.81323 0.83257 0.85042 0.84888 0.85338 0.90477 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.60 13.96 55.43 0.77 -22.82 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.86 17.66 24.31 -169.99 -4.13 13.53 16 4 H -0.27 -5.39 7.05 56.52 0.40 -4.99 16 5 H -0.26 -4.76 5.16 56.52 0.29 -4.47 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.54 -13.22 9.19 -34.44 -0.32 -13.54 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.20 4.18 1.06 -90.85 -0.10 4.08 16 10 O -0.55 -12.15 13.35 -35.23 -0.47 -12.62 16 11 C 0.06 1.04 7.10 -2.84 -0.02 1.02 16 12 N -0.63 -11.54 3.61 -178.11 -0.64 -12.18 16 13 C 0.51 8.99 8.13 -10.98 -0.09 8.90 16 14 O -0.54 -11.54 17.15 5.56 0.10 -11.44 16 15 C 0.09 1.23 6.23 -5.20 -0.03 1.19 16 16 N -0.46 -6.38 2.27 -115.71 -0.26 -6.64 16 17 C 0.07 0.78 11.28 -16.71 -0.19 0.59 16 18 C -0.20 -2.32 11.08 -37.66 -0.42 -2.73 16 19 C -0.12 -1.55 6.37 -105.12 -0.67 -2.22 16 20 C -0.04 -0.47 10.05 -39.65 -0.40 -0.87 16 21 C -0.18 -2.07 9.95 -39.88 -0.40 -2.47 16 22 C 0.11 1.53 7.28 -39.39 -0.29 1.25 16 23 F -0.14 -1.92 17.25 2.25 0.04 -1.88 16 24 C -0.16 -2.27 9.97 -39.36 -0.39 -2.67 16 25 C 0.13 1.96 6.80 -84.00 -0.57 1.38 16 26 C 0.13 2.55 8.23 -2.97 -0.02 2.53 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.35 7.35 3.57 45.56 0.16 7.51 16 29 H 0.10 1.66 8.09 -51.92 -0.42 1.24 16 30 H 0.07 1.16 6.83 -51.93 -0.35 0.80 16 31 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.12 1.26 8.11 -51.93 -0.42 0.84 16 33 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.10 1.79 8.09 -51.93 -0.42 1.37 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -31.01 337.04 -7.60 -38.62 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.08 Total: 11.99 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -4.00 Total: -1.63 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.13 Total: -41.64 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.38 Total: -24.06 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.13 Total: 13.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.01 -7.60 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649856450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.882 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds