Wall clock time and date at job start Tue Mar 31 2020 11:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21281 * 119.99980 * 179.86464 * 13 12 11 15 15 C 1.50696 * 119.99792 * 359.87006 * 13 12 11 16 16 N 1.46500 * 109.46922 * 179.97438 * 15 13 12 17 17 C 1.36911 * 125.06588 * 264.69704 * 16 15 13 18 18 C 1.34200 * 109.92174 * 179.85043 * 17 16 15 19 19 C 1.46533 * 107.00360 * 0.40072 * 18 17 16 20 20 C 1.39631 * 133.99112 * 179.73276 * 19 18 17 21 21 C 1.36600 * 119.80342 * 180.02562 * 20 19 18 22 22 C 1.39042 * 120.49787 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.69106 * 179.97438 * 22 21 20 24 24 C 1.37940 * 120.61117 * 0.02790 * 22 21 20 25 25 C 1.37681 * 125.06857 * 84.99794 * 16 15 13 26 26 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 29 29 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 30 30 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 31 31 H 1.08997 * 109.47166 * 299.99767 * 15 13 12 32 32 H 1.08996 * 109.47290 * 59.99858 * 15 13 12 33 33 H 1.08001 * 125.03452 * 0.02562 * 17 16 15 34 34 H 1.08005 * 126.49891 * 180.16814 * 18 17 16 35 35 H 1.08006 * 120.09828 * 359.97438 * 20 19 18 36 36 H 1.07998 * 119.75420 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.11584 * 179.97438 * 24 22 21 38 38 H 1.08999 * 113.76805 * 221.15228 * 26 12 11 39 39 H 1.09001 * 113.77518 * 89.75919 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9074 -3.3080 -0.9006 15 6 7.0444 -1.5307 -2.4472 16 7 8.3825 -2.0773 -2.6860 17 6 9.5314 -1.6346 -2.0872 18 6 10.5794 -2.3503 -2.5233 19 6 10.0613 -3.3253 -3.4868 20 6 10.6481 -4.3233 -4.2674 21 6 9.8701 -5.0865 -5.0909 22 6 8.4971 -4.8776 -5.1578 23 9 7.7431 -5.6416 -5.9784 24 6 7.8978 -3.8969 -4.3951 25 6 8.6730 -3.1088 -3.5504 26 6 4.1313 -2.6024 -0.0480 27 1 -0.4850 0.8401 0.0004 28 1 3.7023 0.5402 1.0280 29 1 3.4726 -1.2571 -2.2148 30 1 4.5870 0.0025 -1.5238 31 1 6.4704 -1.5566 -3.3734 32 1 7.1295 -0.5006 -2.1012 33 1 9.5857 -0.8306 -1.3681 34 1 11.6100 -2.2282 -2.2241 35 1 11.7141 -4.4909 -4.2208 36 1 10.3248 -5.8580 -5.6946 37 1 6.8307 -3.7412 -4.4536 38 1 4.5862 -2.9145 0.8921 39 1 3.4719 -3.3584 -0.4745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649856450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:32 Heat of formation + Delta-G solvation = -26.287694 kcal Electronic energy + Delta-G solvation = -25999.069754 eV Core-core repulsion = 22016.290803 eV Total energy + Delta-G solvation = -3982.778951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.117 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.91206 -42.45619 -41.32659 -39.36945 -37.71407 -36.26005 -34.56339 -33.94323 -31.90408 -30.74978 -29.51436 -28.42324 -27.16453 -26.64594 -23.96055 -22.80673 -22.20127 -21.34184 -20.34256 -19.41663 -18.65642 -18.38617 -18.16048 -18.03250 -17.22816 -16.86044 -16.75269 -16.59792 -16.04533 -15.57313 -15.49773 -15.26886 -14.95068 -14.87832 -14.56349 -14.35143 -14.23322 -14.11381 -13.86705 -13.68160 -13.19140 -12.98606 -12.83189 -12.68399 -12.45849 -12.33141 -12.01250 -11.94360 -11.53222 -11.13830 -10.95314 -10.71003 -10.51351 -9.77184 -9.19126 -8.69072 -8.42973 -6.57236 -0.03973 0.43122 1.24484 1.29435 1.33122 1.42098 1.43195 1.77393 1.97817 2.18891 2.73746 2.76613 3.13127 3.24120 3.39275 3.59347 3.68498 3.79831 3.88775 3.99841 4.07364 4.16537 4.28981 4.36203 4.41344 4.49256 4.58027 4.62527 4.72488 4.80145 4.90815 4.94786 5.06025 5.15029 5.26789 5.36678 5.72810 5.76557 6.03104 6.11089 6.22505 6.51252 6.61165 6.70162 6.93097 7.11641 8.72578 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.003194 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.052898 B = 8763.825642 C = 9371.662770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.025 3.975 3 Si 0.921 3.079 4 H -0.259 1.259 5 H -0.217 1.217 6 H -0.284 1.284 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.187 3.813 10 O -0.560 6.560 11 C 0.074 3.926 12 N -0.631 5.631 13 C 0.507 3.493 14 O -0.582 6.582 15 C 0.101 3.899 16 N -0.472 5.472 17 C 0.053 3.947 18 C -0.201 4.201 19 C -0.136 4.136 20 C -0.037 4.037 21 C -0.182 4.182 22 C 0.098 3.902 23 F -0.147 7.147 24 C -0.181 4.181 25 C 0.106 3.894 26 C 0.123 3.877 27 H 0.274 0.726 28 H 0.358 0.642 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.198 0.802 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.417 1.042 -9.688 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.176 4.176 3 Si 0.744 3.256 4 H -0.185 1.185 5 H -0.140 1.140 6 H -0.210 1.210 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.147 3.853 10 O -0.371 6.371 11 C -0.048 4.048 12 N -0.365 5.365 13 C 0.296 3.704 14 O -0.462 6.462 15 C -0.024 4.024 16 N -0.155 5.155 17 C -0.070 4.070 18 C -0.225 4.225 19 C -0.141 4.141 20 C -0.055 4.055 21 C -0.202 4.202 22 C 0.078 3.922 23 F -0.126 7.126 24 C -0.203 4.203 25 C 0.000 4.000 26 C 0.001 3.999 27 H 0.083 0.917 28 H 0.211 0.789 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.215 0.785 34 H 0.195 0.805 35 H 0.184 0.816 36 H 0.176 0.824 37 H 0.141 0.859 38 H 0.085 0.915 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.762 0.194 -9.322 22.759 hybrid contribution -1.436 0.690 0.107 1.597 sum 19.326 0.883 -9.215 21.429 Atomic orbital electron populations 1.70014 1.08304 1.28933 1.49126 1.25917 0.95643 1.03236 0.92812 0.86316 0.80522 0.78696 0.80027 1.18488 1.14045 1.21016 1.21347 0.89685 0.94511 1.53023 0.93087 1.20525 0.90695 0.88865 0.85252 1.86464 1.67204 1.26130 1.57345 1.24626 0.88364 0.91317 1.00465 1.50149 1.12210 1.32682 1.41475 1.21224 0.80646 0.85001 0.83490 1.90712 1.66140 1.31346 1.58031 1.21686 0.82219 0.99060 0.99484 1.43622 1.06507 1.29438 1.35930 1.22461 0.83523 1.01660 0.99367 1.22019 1.00043 0.98457 1.01946 1.19700 0.91887 1.00490 1.01984 1.20475 1.01188 0.91585 0.92289 1.20873 0.90833 1.04250 1.04196 1.17417 0.89963 0.92124 0.92676 1.91463 1.76672 1.74078 1.70411 1.19887 0.99954 0.99236 1.01186 1.18012 0.94916 0.92172 0.94932 1.23258 0.87830 0.96793 0.92049 0.91709 0.78934 0.87418 0.88087 0.84900 0.82841 0.78540 0.80458 0.81646 0.82356 0.85923 0.91470 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.50 13.96 21.45 0.30 -51.20 16 2 C 0.02 1.25 5.47 84.66 0.46 1.72 16 3 Si 0.92 34.94 24.31 68.60 1.67 36.61 16 4 H -0.26 -9.54 7.05 99.48 0.70 -8.84 16 5 H -0.22 -6.78 5.16 99.48 0.51 -6.26 16 6 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.55 -27.44 9.19 25.60 0.24 -27.20 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 9 C 0.19 7.76 1.06 -10.88 -0.01 7.75 16 10 O -0.56 -23.39 13.35 -148.98 -1.99 -25.38 16 11 C 0.07 2.44 7.10 86.44 0.61 3.05 16 12 N -0.63 -21.98 3.61 -839.63 -3.03 -25.01 16 13 C 0.51 17.07 8.13 87.65 0.71 17.79 16 14 O -0.58 -24.68 17.15 -3.03 -0.05 -24.73 16 15 C 0.10 2.33 6.23 85.63 0.53 2.87 16 16 N -0.47 -11.95 2.27 -519.99 -1.18 -13.13 16 17 C 0.05 1.11 11.28 82.98 0.94 2.04 16 18 C -0.20 -4.04 11.08 23.51 0.26 -3.78 16 19 C -0.14 -3.29 6.37 -20.19 -0.13 -3.42 16 20 C -0.04 -0.73 10.05 22.22 0.22 -0.51 16 21 C -0.18 -3.81 9.95 22.08 0.22 -3.59 16 22 C 0.10 2.59 7.28 22.39 0.16 2.76 16 23 F -0.15 -4.02 17.25 44.97 0.78 -3.25 16 24 C -0.18 -5.13 9.97 22.41 0.22 -4.91 16 25 C 0.11 2.97 6.80 39.03 0.27 3.24 16 26 C 0.12 4.88 8.23 86.49 0.71 5.59 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.36 13.78 3.57 -74.06 -0.26 13.52 16 29 H 0.11 3.37 8.09 -2.38 -0.02 3.35 16 30 H 0.10 2.75 6.83 -2.39 -0.02 2.73 16 31 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.15 2.50 8.11 -2.39 -0.02 2.48 16 33 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.12 3.42 8.06 -2.91 -0.02 3.39 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.10 3.76 8.09 -2.39 -0.02 3.74 16 Total: -1.00 -70.36 337.04 2.54 -67.81 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.63 Total: 34.91 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.42 Total: 3.37 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.91 Total: -89.35 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -2.04 Total: -50.11 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 1.67 Total: 36.61 kcal Total: -70.36 2.54 -67.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649856450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.527 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds