Wall clock time and date at job start Tue Mar 31 2020 11:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35656 * 117.00333 * 2 1 4 4 N 1.32372 * 119.51150 * 359.97438 * 3 2 1 5 5 C 1.32192 * 121.70323 * 179.97438 * 4 3 2 6 6 O 1.35606 * 119.73810 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99721 * 359.97438 * 6 5 4 8 8 C 1.39920 * 120.52684 * 0.25615 * 5 4 3 9 9 C 1.48298 * 120.50006 * 179.74474 * 8 5 4 10 10 C 1.39031 * 120.42165 * 244.72388 * 9 8 5 11 11 C 1.40949 * 118.12560 * 179.72120 * 10 9 8 12 12 C 1.41376 * 120.57013 * 180.25722 * 11 10 9 13 13 H 1.07999 * 120.00092 * 203.76674 * 12 11 10 14 14 C 1.39889 * 119.99818 * 23.77264 * 12 11 10 15 15 N 1.30866 * 120.00350 * 17.40412 * 14 12 11 16 16 Si 1.86802 * 119.99770 * 197.40557 * 14 12 11 17 17 H 1.48500 * 109.47145 * 89.99609 * 16 14 12 18 18 H 1.48496 * 109.46985 * 210.00053 * 16 14 12 19 19 H 1.48500 * 109.47063 * 330.00077 * 16 14 12 20 20 C 1.40806 * 118.85560 * 0.57155 * 11 10 9 21 21 N 1.31510 * 120.70628 * 359.68731 * 20 11 10 22 22 C 1.32141 * 122.08006 * 0.02562 * 21 20 11 23 23 F 1.35102 * 119.46095 * 180.02562 * 22 21 20 24 24 C 1.39682 * 118.99700 * 359.49610 * 8 5 4 25 25 C 1.38328 * 118.43543 * 0.49299 * 24 8 5 26 26 C 1.50704 * 120.31554 * 179.72799 * 25 24 8 27 27 H 1.09008 * 109.47153 * 300.00342 * 1 2 3 28 28 H 1.09004 * 109.47087 * 60.00289 * 1 2 3 29 29 H 1.09000 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47016 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.46866 * 60.00791 * 7 6 5 32 32 H 1.08998 * 109.47896 * 300.00160 * 7 6 5 33 33 H 1.07999 * 120.93632 * 359.97438 * 10 9 8 34 34 H 0.96998 * 120.00161 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.64684 * 179.70640 * 20 11 10 36 36 H 1.07992 * 120.77881 * 180.23917 * 24 8 5 37 37 H 1.09002 * 109.46719 * 270.01908 * 26 25 24 38 38 H 1.08993 * 109.47058 * 30.02377 * 26 25 24 39 39 H 1.08995 * 109.46709 * 150.02217 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 7 1.3145 2.3127 -0.0005 5 6 1.8693 3.5126 0.0000 6 8 1.0828 4.6173 -0.0011 7 6 -0.3307 4.4072 -0.0033 8 6 3.2615 3.6519 -0.0043 9 6 3.8832 4.9983 -0.0095 10 6 4.6400 5.4201 -1.0968 11 6 5.2036 6.7113 -1.0532 12 6 5.9778 7.1947 -2.1329 13 1 6.7051 7.9761 -1.9686 14 6 5.8016 6.6611 -3.4139 15 7 4.7203 5.9803 -3.6962 16 14 7.1101 6.9204 -4.7217 17 1 8.0940 5.8097 -4.6645 18 1 6.4716 6.9477 -6.0621 19 1 7.8048 8.2101 -4.4780 20 6 4.9880 7.5087 0.0871 21 7 4.2683 7.0616 1.0929 22 6 3.7203 5.8593 1.0839 23 9 2.9903 5.4538 2.1460 24 6 4.0570 2.5038 0.0016 25 6 3.4322 1.2696 0.0011 26 6 4.2493 0.0033 0.0011 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.8412 5.3703 -0.0045 31 1 -0.6159 3.8455 0.8863 32 1 -0.6133 3.8456 -0.8937 33 1 4.7883 4.7782 -1.9526 34 1 4.5980 5.6106 -4.5846 35 1 5.4179 8.4983 0.1360 36 1 5.1343 2.5779 0.0024 37 1 4.4470 -0.3015 -1.0266 38 1 5.1937 0.1804 0.5157 39 1 3.6981 -0.7847 0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245797607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:21 Heat of formation + Delta-G solvation = -59.327958 kcal Electronic energy + Delta-G solvation = -26699.071576 eV Core-core repulsion = 22714.859892 eV Total energy + Delta-G solvation = -3984.211684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.46620 -40.69976 -38.75089 -38.16178 -36.89953 -34.15932 -33.13788 -32.64543 -30.36381 -28.79324 -27.70743 -27.45430 -25.57234 -25.45609 -23.31101 -22.17492 -21.74748 -20.54350 -18.65942 -17.76734 -17.47361 -16.57031 -16.24086 -15.90458 -15.65086 -15.30168 -15.12774 -14.82264 -14.54497 -14.45409 -13.63278 -13.48385 -13.38953 -13.18549 -12.64019 -12.47029 -12.34092 -12.18290 -12.07356 -11.91134 -11.76147 -11.70664 -11.46915 -11.35737 -11.24375 -11.16826 -10.72408 -10.36593 -10.20928 -9.72082 -9.47290 -9.35734 -8.43728 -8.36858 -7.75942 -7.36132 -6.98956 -4.59444 1.42285 1.53194 2.37561 2.69997 2.96517 2.99809 3.04418 3.14280 3.42400 3.76054 3.97447 4.37968 4.47626 5.00523 5.12290 5.18739 5.23075 5.27959 5.39259 5.42294 5.49163 5.49631 5.56168 5.60821 5.68727 5.77669 5.80544 6.05918 6.21951 6.29292 6.45790 6.55172 6.65120 6.81086 6.94966 6.97944 7.06894 7.48951 7.63804 7.66230 7.80046 7.99698 8.24905 8.51225 8.51496 9.26775 9.92583 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.004647 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.896817 B = 6024.407374 C = 6913.418514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.345 3.655 4 N -0.592 5.592 5 C 0.370 3.630 6 O -0.284 6.284 7 C 0.042 3.958 8 C -0.111 4.111 9 C -0.084 4.084 10 C -0.096 4.096 11 C 0.055 3.945 12 C -0.442 4.442 13 H 0.088 0.912 14 C 0.074 3.926 15 N -0.784 5.784 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.259 1.259 20 C 0.011 3.989 21 N -0.491 5.491 22 C 0.177 3.823 23 F -0.145 7.145 24 C -0.003 4.003 25 C -0.194 4.194 26 C -0.090 4.090 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.137 0.863 34 H 0.286 0.714 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 -10.278 1.362 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.167 3.833 4 N -0.331 5.331 5 C 0.191 3.809 6 O -0.189 6.189 7 C -0.054 4.054 8 C -0.115 4.115 9 C -0.088 4.088 10 C -0.122 4.122 11 C 0.051 3.949 12 C -0.472 4.472 13 H 0.106 0.894 14 C -0.146 4.146 15 N -0.409 5.409 16 Si 0.738 3.262 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.183 1.183 20 C -0.151 4.151 21 N -0.203 5.203 22 C 0.022 3.978 23 F -0.125 7.125 24 C -0.028 4.028 25 C -0.197 4.197 26 C -0.147 4.147 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.724 -9.940 1.926 11.631 hybrid contribution 0.606 -0.359 -1.258 1.442 sum -5.118 -10.299 0.668 11.520 Atomic orbital electron populations 1.22785 0.77868 1.02450 1.02283 1.86207 1.22348 1.24597 1.88119 1.19085 0.88465 0.83225 0.92491 1.66685 1.41238 0.98362 1.26776 1.19374 0.88117 0.83368 0.90005 1.86428 1.18637 1.26991 1.86847 1.22803 0.78427 1.02521 1.01637 1.18538 0.89481 0.94575 1.08916 1.18712 1.02486 0.92087 0.95563 1.21696 0.98309 0.96089 0.96087 1.18458 0.91815 0.91203 0.93451 1.19550 1.17941 1.18126 0.91546 0.89418 1.26003 0.95408 0.93071 1.00121 1.69797 1.22864 1.25458 1.22736 0.86192 0.80851 0.80251 0.78878 1.19017 1.20143 1.18288 1.22280 1.02245 0.99266 0.91263 1.66273 1.09702 1.13619 1.30707 1.17503 1.02359 0.92204 0.85684 1.91394 1.75741 1.89762 1.55633 1.21237 1.00267 0.88995 0.92267 1.19572 0.90703 0.96824 1.12611 1.20438 0.98531 0.93659 1.02063 0.92571 0.92549 0.88952 0.88812 0.92751 0.92749 0.84505 0.90306 0.84497 0.83463 0.91671 0.91669 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.37 101.05 1.05 1.50 16 2 O -0.31 -4.35 9.51 -18.67 -0.18 -4.52 16 3 C 0.34 5.74 7.47 -17.09 -0.13 5.62 16 4 N -0.59 -10.64 8.04 -13.13 -0.11 -10.74 16 5 C 0.37 7.50 7.32 -16.77 -0.12 7.37 16 6 O -0.28 -5.79 9.71 -18.51 -0.18 -5.97 16 7 C 0.04 0.62 10.38 101.05 1.05 1.67 16 8 C -0.11 -2.33 5.04 -104.59 -0.53 -2.86 16 9 C -0.08 -1.99 4.97 -104.76 -0.52 -2.51 16 10 C -0.10 -2.37 8.51 -38.26 -0.33 -2.70 16 11 C 0.06 1.38 5.59 -106.71 -0.60 0.79 16 12 C -0.44 -10.67 9.08 -37.77 -0.34 -11.01 16 13 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 14 C 0.07 1.69 5.18 -17.35 -0.09 1.60 16 15 N -0.78 -18.85 10.92 55.54 0.61 -18.24 16 16 Si 0.91 17.13 29.59 -169.99 -5.03 12.10 16 17 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 C 0.01 0.26 10.96 -16.72 -0.18 0.07 16 21 N -0.49 -12.47 10.33 -12.57 -0.13 -12.60 16 22 C 0.18 4.41 8.12 -16.71 -0.14 4.27 16 23 F -0.15 -3.55 16.70 2.25 0.04 -3.52 16 24 C 0.00 -0.05 9.56 -39.01 -0.37 -0.43 16 25 C -0.19 -3.10 5.91 -104.35 -0.62 -3.72 16 26 C -0.09 -1.10 9.80 36.01 0.35 -0.74 16 27 H 0.06 0.62 8.10 -51.92 -0.42 0.20 16 28 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.14 3.41 6.20 -52.49 -0.33 3.09 16 34 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 35 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 36 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.71 8.09 -51.93 -0.42 0.28 16 39 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -29.01 345.35 -5.77 -34.78 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.48 Total: 4.58 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.51 Total: -1.07 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.37 Total: -41.59 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.36 Total: -10.49 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.01 -5.77 -34.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245797607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.547 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds