Wall clock time and date at job start Tue Mar 31 2020 12:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47240 * 2 1 4 4 C 1.46494 * 120.00060 * 269.99856 * 3 2 1 5 5 C 1.50698 * 109.47172 * 269.99831 * 4 3 2 6 6 H 1.07997 * 120.00392 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00362 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99470 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00483 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47061 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47098 * 120.00542 * 9 7 5 12 12 H 1.48500 * 109.47220 * 240.00849 * 9 7 5 13 13 C 1.34780 * 120.00096 * 90.00037 * 3 2 1 14 14 O 1.21274 * 120.00308 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99698 * 359.97438 * 13 3 2 16 16 S 1.81397 * 109.46615 * 180.02562 * 15 13 3 17 17 C 1.81411 * 102.99759 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.46955 * 179.97438 * 17 16 15 19 19 C 1.38365 * 119.84509 * 90.00317 * 18 17 16 20 20 C 1.37947 * 120.14940 * 179.97438 * 19 18 17 21 21 C 1.39629 * 119.84839 * 359.97438 * 20 19 18 22 22 C 1.43205 * 120.15217 * 180.02562 * 21 20 19 23 23 N 9.37321 * 152.29670 * 189.17856 * 15 1 2 24 24 C 1.39630 * 119.69955 * 0.27680 * 21 20 19 25 25 C 1.37951 * 119.84578 * 359.46927 * 24 21 20 26 26 H 1.09001 * 109.47090 * 59.99959 * 1 2 3 27 27 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47109 * 300.00102 * 1 2 3 29 29 H 1.08998 * 109.47815 * 239.99761 * 2 1 3 30 30 H 1.09001 * 109.47090 * 120.00041 * 2 1 3 31 31 H 1.08997 * 109.47330 * 29.99761 * 4 3 2 32 32 H 1.09002 * 109.47452 * 149.99979 * 4 3 2 33 33 H 0.96999 * 119.99706 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47173 * 60.00187 * 15 13 3 35 35 H 1.08998 * 109.47261 * 300.00161 * 15 13 3 36 36 H 1.09000 * 109.46691 * 60.00166 * 17 16 15 37 37 H 1.08992 * 109.47068 * 299.99903 * 17 16 15 38 38 H 1.07992 * 119.92688 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.07687 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.08232 * 179.69881 * 24 21 20 41 41 H 1.08002 * 119.92809 * 180.23515 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7036 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6180 9 14 5.9132 2.0955 -3.4174 10 1 6.6005 1.2395 -2.4174 11 1 5.9202 1.4164 -4.7380 12 1 6.6211 3.3964 -3.5260 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9912 1.3063 2.4724 16 16 2.3836 2.4179 3.8511 17 6 2.0228 1.4018 5.3099 18 6 2.3041 2.1975 6.5583 19 6 1.3015 2.9619 7.1283 20 6 1.5520 3.6923 8.2714 21 6 2.8207 3.6585 8.8536 22 6 3.0877 4.4138 10.0406 23 7 3.3009 5.0155 10.9802 24 6 3.8293 2.8892 8.2701 25 6 3.5636 2.1595 7.1300 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6877 -2.0283 32 1 2.0956 3.1411 -1.1384 33 1 3.6753 3.5161 -4.4439 34 1 2.6211 0.4186 2.5303 35 1 0.9431 1.0126 2.5299 36 1 2.6519 0.5117 5.2972 37 1 0.9740 1.1056 5.2960 38 1 0.3203 2.9861 6.6777 39 1 0.7686 4.2889 8.7150 40 1 4.8142 2.8625 8.7125 41 1 4.3417 1.5609 6.6798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:19 Heat of formation + Delta-G solvation = 15.861807 kcal Electronic energy + Delta-G solvation = -22349.513704 eV Core-core repulsion = 18934.775669 eV Total energy + Delta-G solvation = -3414.738035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.90186 -39.06673 -36.85399 -35.39239 -33.33028 -32.88958 -31.50518 -30.32808 -29.92447 -28.05362 -26.67839 -23.19498 -23.13254 -22.98983 -22.51250 -19.30318 -18.60735 -16.76021 -16.59043 -16.35497 -16.10748 -15.77001 -15.40365 -14.96601 -14.89680 -14.44221 -14.23224 -13.98484 -13.70856 -13.61283 -13.48987 -13.34593 -13.17353 -12.88291 -12.67821 -12.30939 -12.10189 -12.01725 -11.78284 -11.66254 -11.46469 -11.23949 -10.94299 -10.80315 -10.60294 -10.16797 -10.01289 -9.66138 -9.43242 -9.09403 -9.04424 -8.46610 -7.78331 -7.58217 -6.07471 -4.12259 0.22065 0.94864 1.54529 2.32314 2.46447 2.72379 3.25985 3.28182 3.36411 3.40169 3.49643 3.54721 3.84740 4.25339 4.33470 4.42272 4.47740 4.78592 4.89405 4.90318 5.09241 5.14777 5.15388 5.17422 5.27335 5.36280 5.37799 5.54301 5.57205 5.68274 5.77625 5.88409 5.93412 6.09570 6.14927 6.37936 6.39674 6.97631 7.13105 7.38947 7.46723 7.88522 8.18978 8.29543 8.83543 8.98686 9.52933 11.00702 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.002383 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.118301 B =11745.910765 C =12632.238227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.521 3.479 14 O -0.520 6.520 15 C -0.128 4.128 16 S -0.163 6.163 17 C -0.082 4.082 18 C -0.034 4.034 19 C -0.103 4.103 20 C -0.068 4.068 21 C -0.032 4.032 22 C 0.257 3.743 23 N -0.421 5.421 24 C -0.068 4.068 25 C -0.103 4.103 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 -8.716 19.927 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.305 3.695 14 O -0.396 6.396 15 C -0.279 4.279 16 S 0.066 5.934 17 C -0.230 4.230 18 C -0.036 4.036 19 C -0.123 4.123 20 C -0.089 4.089 21 C -0.036 4.036 22 C -0.059 4.059 23 N -0.096 5.096 24 C -0.089 4.089 25 C -0.123 4.123 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.634 -6.039 21.078 22.638 hybrid contribution 0.386 -1.799 -0.854 2.029 sum -5.247 -7.838 20.224 22.315 Atomic orbital electron populations 1.22227 0.96689 1.01477 1.02415 1.21444 0.93573 0.84140 1.02751 1.48198 1.63667 1.13270 1.07358 1.19315 0.96422 0.93698 0.77764 1.21452 0.96853 1.31966 1.06260 0.92391 1.24943 0.97910 0.94899 0.96401 1.69941 1.35610 1.33397 1.14338 0.86436 0.84570 0.78109 0.78273 1.19791 1.20985 1.20822 1.19362 0.79292 0.86828 0.84025 1.90726 1.44993 1.17497 1.86427 1.23722 1.05684 1.02179 0.96355 1.87916 1.88441 1.21076 0.95975 1.22531 1.05383 1.00595 0.94468 1.19477 0.94004 0.96186 0.93929 1.21017 0.99861 0.96151 0.95271 1.21151 0.95005 0.97716 0.95028 1.16024 0.95753 1.00071 0.91763 1.25742 0.93729 0.93391 0.92989 1.81263 1.07547 1.09488 1.11311 1.21160 0.98300 0.94361 0.95039 1.21036 0.96427 0.99533 0.95267 0.91867 0.92089 0.93136 0.89710 0.91873 0.94822 0.93761 0.92733 0.87780 0.87864 0.88816 0.88854 0.84495 0.84773 0.84756 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.15 0.38 -1.66 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.86 2.46 -175.07 -0.43 -12.29 16 4 C 0.25 6.27 5.16 -5.20 -0.03 6.24 16 5 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.52 10.35 7.69 -10.98 -0.08 10.26 16 14 O -0.52 -12.91 15.44 5.56 0.09 -12.82 16 15 C -0.13 -1.73 4.98 36.01 0.18 -1.55 16 16 S -0.16 -2.19 20.86 -107.50 -2.24 -4.43 16 17 C -0.08 -0.65 6.06 36.00 0.22 -0.43 16 18 C -0.03 -0.26 5.15 -104.53 -0.54 -0.80 16 19 C -0.10 -0.72 9.68 -39.64 -0.38 -1.10 16 20 C -0.07 -0.46 9.76 -39.17 -0.38 -0.84 16 21 C -0.03 -0.24 5.73 -106.93 -0.61 -0.86 16 22 C 0.26 2.43 15.33 -22.47 -0.34 2.08 16 23 N -0.42 -4.98 18.54 41.84 0.78 -4.21 16 24 C -0.07 -0.47 9.76 -39.17 -0.38 -0.85 16 25 C -0.10 -0.73 9.68 -39.64 -0.38 -1.12 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.57 7.22 -51.93 -0.37 0.19 16 29 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.10 1.18 7.40 -51.92 -0.38 0.80 16 35 H 0.10 1.11 7.18 -51.92 -0.37 0.74 16 36 H 0.09 0.61 8.08 -51.92 -0.42 0.19 16 37 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -34.66 374.03 -8.87 -43.54 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -5.61 Total: -4.06 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.80 Total: -2.45 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.08 Total: -42.02 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.24 Total: -4.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.66 -8.87 -43.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.400 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds