Wall clock time and date at job start Tue Mar 31 2020 12:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47286 * 2 1 4 4 C 1.50698 * 109.46842 * 239.99592 * 2 1 3 5 5 N 1.27931 * 124.24074 * 285.02160 * 4 2 1 6 6 C 1.34658 * 117.84506 * 179.97438 * 5 4 2 7 7 C 1.40975 * 129.68833 * 179.97438 * 6 5 4 8 8 C 1.36177 * 120.42546 * 179.97438 * 7 6 5 9 9 C 1.38794 * 120.78067 * 0.02815 * 8 7 6 10 10 C 1.37661 * 120.06547 * 359.97438 * 9 8 7 11 11 C 1.39331 * 119.95116 * 359.97438 * 10 9 8 12 12 S 1.70648 * 124.23403 * 105.00243 * 4 2 1 13 13 N 1.46496 * 109.47092 * 119.99822 * 2 1 3 14 14 C 1.46503 * 120.00236 * 59.99637 * 13 2 1 15 15 C 1.34781 * 120.00296 * 239.99697 * 13 2 1 16 16 O 1.21282 * 119.99378 * 0.02562 * 15 13 2 17 17 C 1.50696 * 120.00203 * 180.02562 * 15 13 2 18 18 C 1.53000 * 109.46847 * 180.02562 * 17 15 13 19 19 C 1.50704 * 109.46723 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00603 * 359.97438 * 19 18 17 21 21 C 1.37888 * 119.99688 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99783 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99546 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47422 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46665 * 120.00523 * 23 21 19 26 26 H 1.48501 * 109.46909 * 239.99782 * 23 21 19 27 27 H 1.08999 * 109.47158 * 59.99851 * 1 2 3 28 28 H 1.09000 * 109.47625 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47142 * 300.00206 * 1 2 3 30 30 H 1.07996 * 119.78336 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.60696 * 180.02562 * 8 7 6 32 32 H 1.07996 * 119.96720 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.01919 * 179.97438 * 10 9 8 34 34 H 1.09009 * 109.46912 * 89.99894 * 14 13 2 35 35 H 1.08997 * 109.47674 * 209.99863 * 14 13 2 36 36 H 1.09003 * 109.47129 * 330.00696 * 14 13 2 37 37 H 1.09002 * 109.46727 * 299.99651 * 17 15 13 38 38 H 1.09000 * 109.47451 * 60.00078 * 17 15 13 39 39 H 1.09001 * 109.47344 * 299.99578 * 18 17 15 40 40 H 1.09001 * 109.47223 * 60.00228 * 18 17 15 41 41 H 0.97003 * 119.99756 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 7 2.0137 -1.9801 -1.3865 6 6 2.4959 -2.4791 -2.5405 7 6 2.5957 -3.8179 -2.9704 8 6 3.1215 -4.1128 -4.1915 9 6 3.5686 -3.1049 -5.0345 10 6 3.4836 -1.7884 -4.6410 11 6 2.9476 -1.4678 -3.3956 12 16 2.6965 0.0779 -2.5903 13 7 2.0183 -0.6906 1.1962 14 6 1.6643 -2.0931 1.4281 15 6 2.7932 -0.0356 2.0833 16 8 3.0858 1.1257 1.8915 17 6 3.2960 -0.7461 3.3135 18 6 4.1454 0.2158 4.1466 19 6 4.6477 -0.4946 5.3771 20 1 4.3868 -1.5285 5.5481 21 6 5.4404 0.1756 6.2848 22 7 5.7585 1.4345 6.0763 23 14 6.0635 -0.7053 7.8096 24 1 5.5694 -2.1056 7.8091 25 1 7.5485 -0.7047 7.8094 26 1 5.5685 -0.0056 9.0224 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.2523 -4.6148 -2.3275 31 1 3.1913 -5.1431 -4.5077 32 1 3.9837 -3.3536 -5.9999 33 1 3.8322 -1.0048 -5.2974 34 1 2.4157 -2.7377 0.9718 35 1 1.6237 -2.2852 2.5003 36 1 0.6903 -2.3002 0.9847 37 1 2.4484 -1.0889 3.9069 38 1 3.9017 -1.6023 3.0166 39 1 4.9930 0.5590 3.5534 40 1 3.5393 1.0717 4.4436 41 1 6.3158 1.9060 6.7150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291069656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:11 Heat of formation + Delta-G solvation = 17.110955 kcal Electronic energy + Delta-G solvation = -23502.569216 eV Core-core repulsion = 20087.885348 eV Total energy + Delta-G solvation = -3414.683868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71084 -39.56540 -37.45408 -35.50066 -33.52521 -32.18335 -31.41378 -30.57706 -29.42659 -26.78627 -25.89123 -25.27200 -23.64077 -22.52876 -21.85183 -20.23950 -18.82369 -18.51603 -17.19211 -16.64911 -16.23785 -15.77282 -15.59737 -15.52664 -14.96413 -14.79309 -14.41266 -14.16025 -13.99801 -13.43712 -13.13274 -12.76907 -12.56078 -12.41216 -12.27935 -12.13839 -12.07915 -12.02354 -11.84311 -11.37053 -11.11844 -11.09216 -10.93585 -10.56010 -10.37832 -9.94230 -9.90839 -9.61678 -9.18321 -9.02728 -8.85221 -8.48876 -8.36459 -8.30738 -5.94896 -3.98969 0.16001 0.85275 1.00581 1.52145 2.08833 3.13323 3.26647 3.33595 3.40748 3.43814 3.45155 3.65020 4.30622 4.48255 4.52803 4.66166 4.85691 4.92993 5.00260 5.04016 5.24734 5.31100 5.40218 5.43698 5.51380 5.57296 5.70124 5.75659 5.83557 5.88402 6.02586 6.06223 6.07774 6.23981 6.25987 6.38991 6.65872 6.89527 7.41596 7.69193 7.76205 7.87494 8.08289 8.39437 8.68062 9.09425 9.64462 11.16144 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.002824 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.653606 B = 9913.671726 C =10338.925896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.208 3.792 3 H 0.122 0.878 4 C 0.091 3.909 5 N -0.456 5.456 6 C 0.085 3.915 7 C -0.064 4.064 8 C -0.109 4.109 9 C -0.106 4.106 10 C -0.070 4.070 11 C -0.187 4.187 12 S 0.112 5.888 13 N -0.614 5.614 14 C 0.091 3.909 15 C 0.513 3.487 16 O -0.533 6.533 17 C -0.125 4.125 18 C 0.037 3.963 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -9.552 -23.528 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.100 3.900 3 H 0.139 0.861 4 C -0.195 4.195 5 N -0.169 5.169 6 C -0.036 4.036 7 C -0.084 4.084 8 C -0.130 4.130 9 C -0.128 4.128 10 C -0.093 4.093 11 C -0.306 4.306 12 S 0.370 5.630 13 N -0.350 5.350 14 C -0.052 4.052 15 C 0.304 3.696 16 O -0.408 6.408 17 C -0.165 4.165 18 C -0.001 4.001 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.228 -8.009 -23.281 26.660 hybrid contribution 0.507 -1.439 0.529 1.615 sum -9.720 -9.449 -22.752 26.484 Atomic orbital electron populations 1.22118 0.92558 1.03375 1.03186 1.19612 0.94814 0.96355 0.79207 0.86074 1.27329 0.99347 0.92368 1.00480 1.66186 1.18529 1.11910 1.20268 1.19272 1.00388 0.95019 0.88935 1.20400 0.98730 0.92963 0.96341 1.20728 0.98594 0.99956 0.93692 1.21127 0.99687 0.91925 1.00052 1.20351 0.98584 0.97201 0.93167 1.23955 1.08702 0.96637 1.01346 1.84103 1.61101 1.06969 1.10860 1.48043 1.52525 1.13262 1.21162 1.21710 1.01079 0.80863 1.01531 1.21738 0.76119 0.87164 0.84574 1.90652 1.56578 1.17225 1.76330 1.21888 1.01117 1.00953 0.92527 1.18923 0.94422 0.93551 0.93206 1.21254 1.31238 0.97812 1.06070 0.92551 1.25028 0.96283 0.94865 0.98235 1.70009 1.37127 1.09493 1.36209 0.86539 0.78587 0.79775 0.83092 1.19731 1.21039 1.21009 0.91316 0.91301 0.90545 0.84794 0.84843 0.84849 0.85249 0.92485 0.90873 0.91266 0.90018 0.90205 0.95873 0.95771 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.15 37.16 0.34 -1.28 16 2 C 0.21 2.86 3.13 -69.09 -0.22 2.64 16 3 H 0.12 1.82 6.89 -51.93 -0.36 1.46 16 4 C 0.09 1.22 6.15 -13.90 -0.09 1.13 16 5 N -0.46 -6.17 8.64 -9.08 -0.08 -6.25 16 6 C 0.08 1.06 7.00 -84.96 -0.59 0.46 16 7 C -0.06 -0.63 10.05 -39.29 -0.39 -1.02 16 8 C -0.11 -0.83 9.94 -40.12 -0.40 -1.23 16 9 C -0.11 -0.79 10.04 -39.59 -0.40 -1.19 16 10 C -0.07 -0.64 10.07 -39.39 -0.40 -1.04 16 11 C -0.19 -2.20 6.56 -38.55 -0.25 -2.45 16 12 S 0.11 1.34 23.10 -107.50 -2.48 -1.14 16 13 N -0.61 -9.60 2.75 -175.26 -0.48 -10.08 16 14 C 0.09 1.17 8.69 59.85 0.52 1.69 16 15 C 0.51 10.25 7.67 -10.99 -0.08 10.17 16 16 O -0.53 -12.56 15.31 5.56 0.09 -12.47 16 17 C -0.13 -2.62 4.19 -27.88 -0.12 -2.74 16 18 C 0.04 0.99 4.26 -27.88 -0.12 0.88 16 19 C -0.53 -15.05 9.11 -34.43 -0.31 -15.37 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 23 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.70 6.66 -51.93 -0.35 0.35 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 32 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.06 0.76 7.63 -51.92 -0.40 0.37 16 35 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 36 H 0.07 0.77 6.43 -51.93 -0.33 0.43 16 37 H 0.08 1.55 7.40 -51.93 -0.38 1.17 16 38 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -34.88 355.75 -9.98 -44.87 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.49 Total: -2.47 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.61 Total: -7.75 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.18 Total: -43.21 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.48 Total: -1.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.88 -9.98 -44.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291069656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.976 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds