Wall clock time and date at job start Tue Mar 31 2020 12:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47222 * 270.00205 * 3 2 1 5 5 H 1.48490 * 109.47263 * 30.00469 * 3 2 1 6 6 H 1.48503 * 109.46631 * 150.00529 * 3 2 1 7 7 C 1.39994 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99558 * 186.90449 * 7 2 1 9 9 C 1.41308 * 120.00264 * 6.90771 * 7 2 1 10 10 C 1.40716 * 119.74643 * 173.06543 * 9 7 2 11 11 C 1.38385 * 119.27546 * 180.02562 * 10 9 7 12 12 C 1.38542 * 118.73701 * 359.72464 * 11 10 9 13 13 C 1.40405 * 119.43462 * 0.52191 * 12 11 10 14 14 N 1.36326 * 119.64990 * 179.74621 * 13 12 11 15 15 C 1.31281 * 119.99578 * 271.01449 * 14 13 12 16 16 N 1.37379 * 120.00585 * 4.67754 * 15 14 13 17 17 C 1.48000 * 119.99597 * 184.68228 * 15 14 13 18 18 C 1.40425 * 119.25739 * 359.97438 * 17 15 14 19 19 C 1.36402 * 119.82032 * 179.97438 * 18 17 15 20 20 C 1.40845 * 118.27103 * 0.02562 * 19 18 17 21 21 C 1.40386 * 121.26104 * 180.02562 * 20 19 18 22 22 C 1.36164 * 119.65386 * 180.02562 * 21 20 19 23 23 C 1.39403 * 120.90554 * 359.91646 * 22 21 20 24 24 C 1.36020 * 121.07019 * 0.06621 * 23 22 21 25 25 C 1.40787 * 119.74067 * 359.97438 * 24 23 22 26 26 N 1.31988 * 119.25478 * 179.73078 * 17 15 14 27 27 N 1.32576 * 120.69475 * 359.47193 * 13 12 11 28 28 H 0.97001 * 119.99895 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.36093 * 359.97438 * 10 9 7 30 30 H 1.07991 * 120.63373 * 180.02562 * 11 10 9 31 31 H 1.07997 * 120.28237 * 180.28048 * 12 11 10 32 32 H 0.97000 * 120.00418 * 173.90936 * 16 15 14 33 33 H 0.97003 * 119.99777 * 353.63261 * 16 15 14 34 34 H 1.08003 * 120.09454 * 359.96099 * 18 17 15 35 35 H 1.07994 * 120.86590 * 179.97438 * 19 18 17 36 36 H 1.07992 * 120.17171 * 359.95650 * 21 20 19 37 37 H 1.07998 * 119.54963 * 179.97438 * 22 21 20 38 38 H 1.08006 * 119.46328 * 180.02562 * 23 22 21 39 39 H 1.08006 * 120.12919 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4391 2.6526 0.7001 6 1 3.5392 1.4400 0.7000 7 6 2.0075 -1.2124 -0.0005 8 1 3.0816 -1.2159 0.1119 9 6 1.3086 -2.4317 -0.1483 10 6 2.0251 -3.6338 -0.2950 11 6 1.3308 -4.8221 -0.4395 12 6 -0.0542 -4.7899 -0.4292 13 6 -0.7146 -3.5594 -0.2844 14 7 -2.0774 -3.5219 -0.2789 15 6 -2.7350 -3.3916 -1.4076 16 7 -2.0561 -3.3895 -2.6019 17 6 -4.2078 -3.2468 -1.3934 18 6 -4.8860 -3.2514 -0.1638 19 6 -6.2433 -3.1182 -0.1373 20 6 -6.9240 -2.9794 -1.3624 21 6 -8.3199 -2.8376 -1.4082 22 6 -8.9446 -2.7063 -2.6110 23 6 -8.2168 -2.7089 -3.7999 24 6 -6.8633 -2.8438 -3.7941 25 6 -6.1805 -2.9829 -2.5708 26 7 -4.8537 -3.1113 -2.5364 27 7 -0.0270 -2.4342 -0.1477 28 1 -0.4850 0.8401 0.0004 29 1 3.1051 -3.6290 -0.2957 30 1 1.8585 -5.7574 -0.5533 31 1 -0.6210 -5.7030 -0.5355 32 1 -2.5467 -3.3823 -3.4387 33 1 -1.0861 -3.3913 -2.6084 34 1 -4.3346 -3.3603 0.7585 35 1 -6.7819 -3.1199 0.7987 36 1 -8.8954 -2.8339 -0.4944 37 1 -10.0186 -2.5978 -2.6443 38 1 -8.7361 -2.6027 -4.7409 39 1 -6.3145 -2.8433 -4.7243 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171048310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:39 Heat of formation + Delta-G solvation = 119.970881 kcal Electronic energy + Delta-G solvation = -24497.498977 eV Core-core repulsion = 20984.124250 eV Total energy + Delta-G solvation = -3513.374727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.88528 -38.69364 -37.52309 -35.97873 -33.70196 -33.49323 -31.79265 -30.77453 -30.34649 -30.02025 -28.69366 -25.80758 -24.86420 -23.68970 -22.28752 -21.81664 -21.27930 -19.65544 -18.07674 -17.42472 -17.27776 -17.10944 -16.31776 -15.56725 -14.85925 -14.68582 -14.64160 -14.54788 -14.46126 -14.19213 -13.82119 -13.16270 -13.13334 -12.89258 -12.54667 -12.34691 -12.02879 -11.78717 -11.50739 -11.26873 -11.22212 -11.03594 -10.72074 -10.63776 -10.57228 -10.13350 -9.87394 -9.57836 -9.18473 -8.81195 -8.40515 -8.08512 -8.04757 -7.36544 -7.14491 -6.34696 -4.50991 0.18370 0.67109 1.87104 2.47791 2.69497 2.99961 3.09886 3.12980 3.21147 3.32234 3.76019 3.96268 4.15339 4.21097 4.45842 4.65311 4.71655 4.73348 4.94033 5.02888 5.11453 5.20394 5.41341 5.64665 5.77755 5.86779 5.89058 6.03110 6.06723 6.17794 6.21722 6.30406 6.42539 6.57833 6.72303 6.78213 6.91252 7.06371 7.23427 7.57781 7.59245 7.75593 7.79331 7.98532 8.19203 8.29013 8.66089 8.85261 9.13441 10.11315 10.33480 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.003222 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.805616 B = 8688.905300 C = 9617.921276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.432 4.432 8 H 0.084 0.916 9 C 0.266 3.734 10 C -0.290 4.290 11 C -0.048 4.048 12 C -0.326 4.326 13 C 0.325 3.675 14 N -0.520 5.520 15 C 0.458 3.542 16 N -0.859 5.859 17 C 0.216 3.784 18 C -0.118 4.118 19 C -0.067 4.067 20 C -0.097 4.097 21 C -0.096 4.096 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.088 4.088 25 C 0.130 3.870 26 N -0.464 5.464 27 N -0.485 5.485 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.398 0.602 33 H 0.406 0.594 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 -3.461 -5.810 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.157 4.157 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.102 0.898 9 C 0.140 3.860 10 C -0.313 4.313 11 C -0.073 4.073 12 C -0.351 4.351 13 C 0.086 3.914 14 N -0.248 5.248 15 C 0.180 3.820 16 N -0.409 5.409 17 C 0.064 3.936 18 C -0.139 4.139 19 C -0.093 4.093 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.107 4.107 25 C 0.006 3.994 26 N -0.174 5.174 27 N -0.202 5.202 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.226 0.774 33 H 0.238 0.762 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.998 -2.579 -5.551 18.067 hybrid contribution 1.067 -0.037 -0.199 1.086 sum -15.932 -2.616 -5.750 17.139 Atomic orbital electron populations 1.70172 1.07057 1.27622 1.28155 1.26076 0.94873 1.01018 0.93744 0.86358 0.80464 0.81012 0.79162 1.19477 1.20206 1.18568 1.19569 0.94695 0.89491 1.42583 0.89779 1.18460 0.87568 0.91946 0.88055 1.21720 0.98668 0.93789 1.17130 1.20704 0.93613 0.96522 0.96456 1.21206 0.94434 0.96742 1.22746 1.19430 0.88191 0.90270 0.93515 1.68548 1.07470 1.26524 1.22226 1.19822 0.88522 0.90524 0.83179 1.43075 1.10064 1.81162 1.06597 1.19322 0.90687 0.94556 0.89066 1.21948 0.94460 0.97684 0.99811 1.21462 0.94196 0.96257 0.97348 1.18956 0.94918 1.01979 0.94133 1.20982 0.92651 0.99263 0.98606 1.20921 1.00212 1.00161 0.92420 1.20867 0.93850 0.99491 0.98543 1.20837 0.94077 0.99216 0.96530 1.18765 0.88636 0.98881 0.93085 1.67740 1.08604 1.12385 1.28663 1.69106 1.07666 1.23982 1.19407 0.91749 0.88409 0.88631 0.89040 0.77352 0.76247 0.82417 0.83848 0.85245 0.85681 0.85414 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.42 11.49 55.55 0.64 -18.78 16 2 C 0.07 1.78 5.49 -17.35 -0.10 1.69 16 3 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.43 -11.73 9.13 -37.76 -0.34 -12.08 16 8 H 0.08 2.13 7.86 -52.49 -0.41 1.72 16 9 C 0.27 7.43 6.54 -85.01 -0.56 6.88 16 10 C -0.29 -7.28 9.83 -38.59 -0.38 -7.66 16 11 C -0.05 -1.12 10.14 -39.42 -0.40 -1.52 16 12 C -0.33 -7.76 9.98 -38.65 -0.39 -8.14 16 13 C 0.33 8.29 5.25 -156.94 -0.82 7.47 16 14 N -0.52 -11.96 9.49 -10.08 -0.10 -12.06 16 15 C 0.46 9.09 7.77 -153.86 -1.19 7.90 16 16 N -0.86 -15.69 8.83 32.56 0.29 -15.40 16 17 C 0.22 3.69 6.75 -82.98 -0.56 3.13 16 18 C -0.12 -1.77 9.52 -39.42 -0.38 -2.14 16 19 C -0.07 -0.80 9.88 -39.26 -0.39 -1.19 16 20 C -0.10 -1.18 5.75 -106.71 -0.61 -1.80 16 21 C -0.10 -0.89 9.77 -39.52 -0.39 -1.28 16 22 C -0.12 -0.97 9.96 -39.89 -0.40 -1.36 16 23 C -0.11 -0.92 9.94 -39.94 -0.40 -1.32 16 24 C -0.09 -0.96 9.99 -39.42 -0.39 -1.36 16 25 C 0.13 1.78 6.61 -84.85 -0.56 1.21 16 26 N -0.46 -7.28 9.52 -7.57 -0.07 -7.35 16 27 N -0.48 -13.69 7.95 -10.64 -0.08 -13.77 16 28 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 29 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.40 6.17 8.21 -40.82 -0.34 5.84 16 33 H 0.41 8.17 7.39 -40.82 -0.30 7.86 16 34 H 0.16 2.43 7.50 -52.48 -0.39 2.03 16 35 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -32.30 344.15 -11.38 -43.68 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -3.96 Total: 16.13 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -8.25 Total: -11.57 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: 0.67 Total: -67.37 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.30 -11.38 -43.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171048310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.650 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds