Wall clock time and date at job start Tue Mar 31 2020 12:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47222 * 270.00205 * 3 2 1 5 5 H 1.48490 * 109.47263 * 30.00469 * 3 2 1 6 6 H 1.48503 * 109.46631 * 150.00529 * 3 2 1 7 7 C 1.39994 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99558 * 186.90449 * 7 2 1 9 9 C 1.41308 * 120.00264 * 6.90771 * 7 2 1 10 10 C 1.40716 * 119.74643 * 173.06543 * 9 7 2 11 11 C 1.38385 * 119.27546 * 180.02562 * 10 9 7 12 12 C 1.38542 * 118.73701 * 359.72464 * 11 10 9 13 13 C 1.40405 * 119.43462 * 0.52191 * 12 11 10 14 14 N 1.36326 * 119.64990 * 179.74621 * 13 12 11 15 15 C 1.31281 * 119.99578 * 271.01449 * 14 13 12 16 16 N 1.37379 * 120.00585 * 4.67754 * 15 14 13 17 17 C 1.48000 * 119.99597 * 184.68228 * 15 14 13 18 18 C 1.40425 * 119.25739 * 359.97438 * 17 15 14 19 19 C 1.36402 * 119.82032 * 179.97438 * 18 17 15 20 20 C 1.40845 * 118.27103 * 0.02562 * 19 18 17 21 21 C 1.40386 * 121.26104 * 180.02562 * 20 19 18 22 22 C 1.36164 * 119.65386 * 180.02562 * 21 20 19 23 23 C 1.39403 * 120.90554 * 359.91646 * 22 21 20 24 24 C 1.36020 * 121.07019 * 0.06621 * 23 22 21 25 25 C 1.40787 * 119.74067 * 359.97438 * 24 23 22 26 26 N 1.31988 * 119.25478 * 179.73078 * 17 15 14 27 27 N 1.32576 * 120.69475 * 359.47193 * 13 12 11 28 28 H 0.97001 * 119.99895 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.36093 * 359.97438 * 10 9 7 30 30 H 1.07991 * 120.63373 * 180.02562 * 11 10 9 31 31 H 1.07997 * 120.28237 * 180.28048 * 12 11 10 32 32 H 0.97000 * 120.00418 * 173.90936 * 16 15 14 33 33 H 0.97003 * 119.99777 * 353.63261 * 16 15 14 34 34 H 1.08003 * 120.09454 * 359.96099 * 18 17 15 35 35 H 1.07994 * 120.86590 * 179.97438 * 19 18 17 36 36 H 1.07992 * 120.17171 * 359.95650 * 21 20 19 37 37 H 1.07998 * 119.54963 * 179.97438 * 22 21 20 38 38 H 1.08006 * 119.46328 * 180.02562 * 23 22 21 39 39 H 1.08006 * 120.12919 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4391 2.6526 0.7001 6 1 3.5392 1.4400 0.7000 7 6 2.0075 -1.2124 -0.0005 8 1 3.0816 -1.2159 0.1119 9 6 1.3086 -2.4317 -0.1483 10 6 2.0251 -3.6338 -0.2950 11 6 1.3308 -4.8221 -0.4395 12 6 -0.0542 -4.7899 -0.4292 13 6 -0.7146 -3.5594 -0.2844 14 7 -2.0774 -3.5219 -0.2789 15 6 -2.7350 -3.3916 -1.4076 16 7 -2.0561 -3.3895 -2.6019 17 6 -4.2078 -3.2468 -1.3934 18 6 -4.8860 -3.2514 -0.1638 19 6 -6.2433 -3.1182 -0.1373 20 6 -6.9240 -2.9794 -1.3624 21 6 -8.3199 -2.8376 -1.4082 22 6 -8.9446 -2.7063 -2.6110 23 6 -8.2168 -2.7089 -3.7999 24 6 -6.8633 -2.8438 -3.7941 25 6 -6.1805 -2.9829 -2.5708 26 7 -4.8537 -3.1113 -2.5364 27 7 -0.0270 -2.4342 -0.1477 28 1 -0.4850 0.8401 0.0004 29 1 3.1051 -3.6290 -0.2957 30 1 1.8585 -5.7574 -0.5533 31 1 -0.6210 -5.7030 -0.5355 32 1 -2.5467 -3.3823 -3.4387 33 1 -1.0861 -3.3913 -2.6084 34 1 -4.3346 -3.3603 0.7585 35 1 -6.7819 -3.1199 0.7987 36 1 -8.8954 -2.8339 -0.4944 37 1 -10.0186 -2.5978 -2.6443 38 1 -8.7361 -2.6027 -4.7409 39 1 -6.3145 -2.8433 -4.7243 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171048310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:38 Heat of formation + Delta-G solvation = 100.512331 kcal Electronic energy + Delta-G solvation = -24498.342763 eV Core-core repulsion = 20984.124250 eV Total energy + Delta-G solvation = -3514.218513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87100 -40.43514 -38.80197 -37.33102 -35.46168 -34.62489 -33.44618 -32.29293 -31.85226 -30.89902 -30.40910 -27.59146 -26.24775 -24.62500 -23.53774 -23.20381 -22.95251 -21.15491 -19.50789 -18.98674 -18.56215 -18.24167 -17.76778 -16.95957 -16.44491 -16.36107 -16.21169 -15.60405 -15.54317 -15.40659 -14.98751 -14.73233 -14.25230 -14.08554 -14.03190 -13.96559 -13.57256 -12.97826 -12.81781 -12.66979 -12.53324 -12.46156 -12.33331 -12.31341 -11.89408 -11.62584 -11.58277 -11.07264 -10.67135 -10.04082 -9.91352 -9.73924 -9.28596 -9.13807 -9.00523 -8.26110 -6.54121 -0.79865 -0.27337 0.80464 0.94070 1.14254 1.32734 1.37721 1.50561 1.52564 2.17573 2.20913 2.44418 2.81384 2.90344 3.13678 3.61209 3.70448 3.83644 3.89174 3.99521 4.05908 4.27828 4.31213 4.38388 4.46222 4.59687 4.72503 4.82059 4.88569 4.98203 5.01810 5.10428 5.15411 5.19489 5.37101 5.43303 5.49908 5.54230 5.66954 5.84088 5.89979 5.92436 6.12904 6.23025 6.64107 6.73227 6.77904 6.93811 7.40034 8.17846 8.43180 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.003222 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.805616 B = 8688.905300 C = 9617.921276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.234 3.766 10 C -0.308 4.308 11 C -0.042 4.042 12 C -0.329 4.329 13 C 0.320 3.680 14 N -0.560 5.560 15 C 0.469 3.531 16 N -0.850 5.850 17 C 0.181 3.819 18 C -0.142 4.142 19 C -0.049 4.049 20 C -0.106 4.106 21 C -0.099 4.099 22 C -0.107 4.107 23 C -0.091 4.091 24 C -0.111 4.111 25 C 0.101 3.899 26 N -0.473 5.473 27 N -0.522 5.522 28 H 0.274 0.726 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.410 0.590 33 H 0.397 0.603 34 H 0.143 0.857 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 -3.116 -6.688 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.199 4.199 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.497 4.497 8 H 0.110 0.890 9 C 0.108 3.892 10 C -0.330 4.330 11 C -0.067 4.067 12 C -0.355 4.355 13 C 0.081 3.919 14 N -0.289 5.289 15 C 0.192 3.808 16 N -0.399 5.399 17 C 0.029 3.971 18 C -0.163 4.163 19 C -0.074 4.074 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.023 4.023 26 N -0.183 5.183 27 N -0.239 5.239 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.241 0.759 33 H 0.227 0.773 34 H 0.161 0.839 35 H 0.199 0.801 36 H 0.180 0.820 37 H 0.182 0.818 38 H 0.180 0.820 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.018 -2.268 -6.465 21.158 hybrid contribution 1.625 -0.249 -0.089 1.647 sum -18.392 -2.517 -6.554 19.687 Atomic orbital electron populations 1.70316 1.08941 1.28693 1.29394 1.27042 0.95641 1.04671 0.92523 0.85128 0.79027 0.75627 0.79410 1.18749 1.19569 1.17585 1.19946 0.95262 0.90423 1.44106 0.89042 1.18966 0.88147 0.93428 0.88707 1.21905 0.99458 0.93763 1.17891 1.21083 0.93441 0.97472 0.94655 1.21486 0.95080 0.96870 1.22035 1.19779 0.89316 0.90219 0.92580 1.68470 1.06137 1.30796 1.23491 1.20328 0.90054 0.87847 0.82607 1.43065 1.09568 1.80170 1.07067 1.19128 0.89235 0.98173 0.90526 1.21853 0.95897 1.00110 0.98464 1.21849 0.92901 0.93609 0.99058 1.19277 0.96562 1.01632 0.93411 1.21375 0.91163 0.98484 1.00728 1.21456 1.02176 0.97352 0.91526 1.21346 0.92810 0.96380 1.00516 1.21039 0.95393 1.00793 0.95766 1.19279 0.88058 0.99873 0.95059 1.67627 1.10138 1.12356 1.28218 1.69053 1.08151 1.25801 1.20936 0.91541 0.86978 0.84809 0.87714 0.75922 0.77343 0.83893 0.80133 0.82030 0.81782 0.82036 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -43.06 11.49 21.83 0.25 -42.81 16 2 C 0.02 1.22 5.49 85.28 0.47 1.69 16 3 Si 0.99 39.79 29.57 68.60 2.03 41.82 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.47 -26.28 9.13 23.45 0.21 -26.07 16 8 H 0.09 4.79 7.86 -2.91 -0.02 4.76 16 9 C 0.23 13.67 6.54 40.24 0.26 13.93 16 10 C -0.31 -15.79 9.83 22.91 0.23 -15.57 16 11 C -0.04 -1.96 10.14 22.38 0.23 -1.74 16 12 C -0.33 -16.07 9.98 22.87 0.23 -15.84 16 13 C 0.32 17.13 5.25 134.21 0.70 17.83 16 14 N -0.56 -27.35 9.49 -185.80 -1.76 -29.12 16 15 C 0.47 19.81 7.77 136.32 1.06 20.87 16 16 N -0.85 -32.93 8.83 -50.91 -0.45 -33.38 16 17 C 0.18 6.50 6.75 42.24 0.28 6.79 16 18 C -0.14 -4.44 9.52 22.37 0.21 -4.23 16 19 C -0.05 -1.11 9.88 22.48 0.22 -0.89 16 20 C -0.11 -2.38 5.75 -21.22 -0.12 -2.51 16 21 C -0.10 -1.41 9.77 22.31 0.22 -1.19 16 22 C -0.11 -1.18 9.96 22.07 0.22 -0.96 16 23 C -0.09 -1.18 9.94 22.03 0.22 -0.96 16 24 C -0.11 -2.24 9.99 22.38 0.22 -2.02 16 25 C 0.10 2.70 6.61 40.44 0.27 2.97 16 26 N -0.47 -15.32 9.52 -177.86 -1.69 -17.01 16 27 N -0.52 -31.04 7.95 -187.58 -1.49 -32.53 16 28 H 0.27 14.42 8.29 -92.71 -0.77 13.65 16 29 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 30 H 0.13 5.07 8.06 -2.91 -0.02 5.04 16 31 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.41 13.46 8.21 -92.71 -0.76 12.70 16 33 H 0.40 16.96 7.39 -92.71 -0.69 16.27 16 34 H 0.14 4.78 7.50 -2.91 -0.02 4.76 16 35 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -75.81 344.15 1.69 -74.12 By element: Atomic # 1 Polarization: 47.13 SS G_CDS: -0.33 Total: 46.81 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.13 Total: -7.89 kcal Atomic # 7 Polarization: -149.71 SS G_CDS: -5.15 Total: -154.85 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -75.81 1.69 -74.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171048310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.633 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds