Wall clock time and date at job start Tue Mar 31 2020 11:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 O 1.42904 * 109.47482 * 120.00115 * 2 1 3 5 5 C 1.35858 * 116.99739 * 86.43220 * 4 2 1 6 6 C 1.38887 * 119.92052 * 354.29124 * 5 4 2 7 7 C 1.37802 * 120.11838 * 179.76464 * 6 5 4 8 8 C 1.39726 * 119.94903 * 0.47217 * 7 6 5 9 9 C 1.47793 * 120.08361 * 179.78439 * 8 7 6 10 10 C 1.39129 * 120.26402 * 129.99685 * 9 8 7 11 11 C 1.38090 * 120.16995 * 180.30300 * 10 9 8 12 12 C 1.38844 * 120.72370 * 359.72255 * 11 10 9 13 13 C 1.37700 * 120.53203 * 359.97212 * 12 11 10 14 14 F 1.35099 * 120.09992 * 180.02562 * 13 12 11 15 15 C 1.41041 * 119.80389 * 0.02566 * 13 12 11 16 16 C 1.40767 * 120.34945 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00186 * 144.56464 * 16 15 13 18 18 C 1.40050 * 119.99942 * 324.56220 * 16 15 13 19 19 N 1.30808 * 119.99895 * 149.24394 * 18 16 15 20 20 Si 1.86803 * 120.00083 * 329.52412 * 18 16 15 21 21 H 1.48496 * 109.47265 * 269.72471 * 20 18 16 22 22 H 1.48503 * 109.46994 * 29.72391 * 20 18 16 23 23 H 1.48494 * 109.47040 * 149.72281 * 20 18 16 24 24 C 1.39708 * 119.83018 * 359.50959 * 8 7 6 25 25 C 1.37960 * 119.88360 * 0.25371 * 24 8 7 26 26 F 1.35107 * 119.97362 * 180.02562 * 25 24 8 27 27 H 1.09005 * 109.47297 * 299.99516 * 1 2 3 28 28 H 1.08997 * 109.47826 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47458 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47262 * 240.00207 * 2 1 3 31 31 H 1.09000 * 109.47026 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46902 * 300.00313 * 3 2 1 33 33 H 1.08997 * 109.46902 * 59.99987 * 3 2 1 34 34 H 1.07998 * 119.94211 * 0.02922 * 6 5 4 35 35 H 1.08001 * 120.02597 * 180.25860 * 7 6 5 36 36 H 1.08001 * 119.91727 * 0.02562 * 10 9 8 37 37 H 1.07999 * 119.63307 * 179.69565 * 11 10 9 38 38 H 1.08000 * 119.73304 * 180.02562 * 12 11 10 39 39 H 0.97003 * 120.00419 * 354.55807 * 19 18 16 40 40 H 1.07996 * 120.05690 * 180.27753 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1409 -2.0233 1.0879 6 6 1.7092 -2.6974 -0.0470 7 6 1.8481 -4.0657 -0.1333 8 6 2.4154 -4.7775 0.9269 9 6 2.5615 -6.2455 0.8394 10 6 3.7829 -6.8470 1.1262 11 6 3.9189 -8.2183 1.0378 12 6 2.8436 -9.0155 0.6690 13 6 1.6199 -8.4517 0.3848 14 9 0.5793 -9.2358 0.0273 15 6 1.4559 -7.0534 0.4680 16 6 0.2099 -6.4650 0.1805 17 1 -0.1186 -5.5980 0.7344 18 6 -0.6039 -7.0038 -0.8239 19 7 -1.9055 -6.9146 -0.7292 20 14 0.1692 -7.8569 -2.2950 21 1 0.4076 -6.8646 -3.3737 22 1 1.4608 -8.4680 -1.8904 23 1 -0.7460 -8.9162 -2.7902 24 6 2.8493 -4.0972 2.0673 25 6 2.7113 -2.7266 2.1444 26 9 3.1309 -2.0668 3.2462 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.2676 -2.1478 -0.8651 35 1 1.5157 -4.5879 -1.0183 36 1 4.6280 -6.2394 1.4144 37 1 4.8723 -8.6756 1.2576 38 1 2.9678 -10.0864 0.6054 39 1 -2.3094 -6.5466 0.0723 40 1 3.2924 -4.6431 2.8870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242201848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:32 Heat of formation + Delta-G solvation = -105.899665 kcal Electronic energy + Delta-G solvation = -26378.132529 eV Core-core repulsion = 22371.981383 eV Total energy + Delta-G solvation = -4006.151146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.117 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.81983 -49.54458 -41.22226 -39.80035 -38.05251 -35.73184 -34.27986 -32.75314 -32.07909 -31.22522 -29.27804 -28.17651 -26.81868 -24.84483 -23.73180 -22.86282 -22.12640 -21.46324 -20.37960 -19.45985 -18.37688 -17.68037 -17.25088 -17.09388 -16.93726 -16.60993 -16.47033 -16.09237 -15.88158 -15.42313 -15.38666 -15.21245 -14.85855 -14.33829 -14.19783 -14.03883 -13.86269 -13.50822 -13.35467 -13.18769 -13.06423 -12.94967 -12.79360 -12.50628 -12.40529 -12.19383 -12.09148 -11.79328 -11.73579 -11.61570 -11.27633 -10.92606 -9.97771 -9.70121 -9.52753 -9.22012 -8.79875 -6.50137 0.02515 0.18767 0.71316 0.83655 1.41568 1.51236 1.66657 2.08762 2.21577 2.53441 2.61558 3.16189 3.32162 3.72106 3.76245 3.85064 3.95706 4.02653 4.10471 4.19200 4.30170 4.32254 4.42153 4.54097 4.66589 4.71584 4.76215 4.84156 4.87205 4.90286 4.99952 5.09930 5.18220 5.20078 5.27757 5.44423 5.50287 5.51875 5.57700 5.70278 5.87193 5.91981 6.07524 6.28821 6.36516 6.58833 6.77058 7.92358 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.004586 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.338940 B = 6104.251231 C = 7390.367574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 C -0.143 4.143 4 O -0.321 6.321 5 C 0.086 3.914 6 C -0.180 4.180 7 C -0.067 4.067 8 C -0.018 4.018 9 C -0.153 4.153 10 C -0.072 4.072 11 C -0.201 4.201 12 C -0.113 4.113 13 C -0.045 4.045 14 F -0.161 7.161 15 C 0.066 3.934 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.033 3.967 19 N -0.819 5.819 20 Si 1.087 2.913 21 H -0.273 1.273 22 H -0.260 1.260 23 H -0.279 1.279 24 C -0.119 4.119 25 C 0.046 3.954 26 F -0.144 7.144 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.282 0.718 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 10.230 -1.353 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.009 3.991 3 C -0.200 4.200 4 O -0.235 6.235 5 C 0.040 3.960 6 C -0.198 4.198 7 C -0.086 4.086 8 C -0.018 4.018 9 C -0.155 4.155 10 C -0.090 4.090 11 C -0.219 4.219 12 C -0.132 4.132 13 C -0.065 4.065 14 F -0.141 7.141 15 C 0.063 3.937 16 C -0.567 4.567 17 H 0.080 0.920 18 C -0.185 4.185 19 N -0.441 5.441 20 Si 0.909 3.091 21 H -0.200 1.200 22 H -0.185 1.185 23 H -0.204 1.204 24 C -0.137 4.137 25 C 0.026 3.974 26 F -0.123 7.123 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.174 0.826 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.024 9.704 -2.558 12.849 hybrid contribution -0.676 0.475 1.782 1.965 sum 7.348 10.179 -0.776 12.578 Atomic orbital electron populations 1.22381 0.94527 1.02523 1.04169 1.22831 0.94937 0.94688 0.86692 1.21877 1.02017 0.91902 1.04161 1.86111 1.81624 1.15372 1.40441 1.18998 0.98751 0.83883 0.94398 1.21219 1.05475 0.94817 0.98331 1.21276 0.95469 0.92963 0.98845 1.18433 0.98031 0.92325 0.93013 1.18649 0.93312 0.90619 1.12870 1.21151 0.95777 0.95033 0.97062 1.20662 0.98722 0.93076 1.09468 1.21049 0.91458 1.00594 1.00054 1.18043 0.85574 0.88628 1.14212 1.91055 1.58446 1.74358 1.90221 1.17785 0.93355 0.89829 0.92765 1.20114 1.01954 1.14496 1.20171 0.91989 1.28039 0.93798 0.92953 1.03738 1.70580 1.12551 1.30401 1.30569 0.83452 0.77196 0.76506 0.71995 1.19957 1.18484 1.20442 1.21151 1.02364 0.90981 0.99227 1.16923 1.06134 0.89955 0.84381 1.91430 1.88547 1.81097 1.51199 0.91752 0.88367 0.93545 0.89903 0.91777 0.87869 0.91711 0.82627 0.85642 0.84831 0.83697 0.85056 0.90770 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 9.20 71.98 0.66 -2.98 16 2 C 0.06 1.38 2.84 30.59 0.09 1.47 16 3 C -0.14 -2.26 9.56 71.98 0.69 -1.57 16 4 O -0.32 -9.67 9.65 -91.95 -0.89 -10.56 16 5 C 0.09 2.87 6.63 22.64 0.15 3.02 16 6 C -0.18 -5.85 8.29 22.32 0.18 -5.67 16 7 C -0.07 -2.54 8.20 22.53 0.18 -2.36 16 8 C -0.02 -0.69 4.95 -20.03 -0.10 -0.79 16 9 C -0.15 -6.44 5.52 -19.64 -0.11 -6.55 16 10 C -0.07 -2.57 9.48 22.45 0.21 -2.36 16 11 C -0.20 -6.83 10.02 22.38 0.22 -6.61 16 12 C -0.11 -4.39 9.99 22.29 0.22 -4.17 16 13 C -0.04 -2.10 5.07 22.83 0.12 -1.99 16 14 F -0.16 -8.00 12.95 44.97 0.58 -7.41 16 15 C 0.07 3.17 4.85 -21.07 -0.10 3.07 16 16 C -0.54 -28.05 7.01 23.33 0.16 -27.88 16 17 H 0.06 3.46 7.33 -2.91 -0.02 3.44 16 18 C 0.03 1.73 4.68 85.29 0.40 2.13 16 19 N -0.82 -44.30 13.65 21.85 0.30 -44.00 16 20 Si 1.09 48.81 25.89 68.60 1.78 50.59 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.26 -11.56 5.40 99.48 0.54 -11.02 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 C -0.12 -4.21 9.48 22.56 0.21 -4.00 16 25 C 0.05 1.62 7.30 22.42 0.16 1.78 16 26 F -0.14 -5.07 17.10 44.97 0.77 -4.31 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.14 7.06 -2.39 -0.02 1.12 16 30 H 0.08 1.66 6.22 -2.39 -0.01 1.65 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.16 4.19 5.46 -2.91 -0.02 4.18 16 35 H 0.13 5.02 7.32 -2.91 -0.02 5.00 16 36 H 0.13 3.92 8.03 -2.91 -0.02 3.90 16 37 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.28 15.14 8.73 -92.71 -0.81 14.33 16 40 H 0.15 4.75 8.04 -2.91 -0.02 4.73 16 Total: -1.00 -58.87 336.93 6.76 -52.11 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.86 Total: 19.03 kcal Atomic # 6 Polarization: -58.82 SS G_CDS: 3.36 Total: -55.46 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.30 Total: -44.00 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.89 Total: -10.56 kcal Atomic # 9 Polarization: -13.07 SS G_CDS: 1.35 Total: -11.72 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.78 Total: 50.59 kcal Total: -58.87 6.76 -52.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242201848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.789 kcal (2) G-P(sol) polarization free energy of solvation -58.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds