Wall clock time and date at job start Tue Mar 31 2020 11:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.52849 * 2 1 4 4 C 1.53141 * 109.50092 * 120.09213 * 2 1 3 5 5 C 1.53151 * 108.97108 * 190.66157 * 4 2 1 6 6 C 1.51499 * 108.70932 * 310.20907 * 5 4 2 7 7 S 1.75823 * 125.04002 * 196.36803 * 6 5 4 8 8 C 1.75713 * 91.20699 * 180.02562 * 7 6 5 9 9 C 1.47061 * 125.33529 * 179.97438 * 8 7 6 10 10 N 1.31523 * 126.41091 * 179.71128 * 9 8 7 11 11 N 1.28659 * 109.22547 * 179.82921 * 10 9 8 12 12 C 1.30319 * 109.58832 * 0.44748 * 11 10 9 13 13 C 1.50705 * 126.16166 * 179.70896 * 12 11 10 14 14 C 1.53004 * 109.46840 * 90.02144 * 13 12 11 15 15 C 1.50705 * 109.46840 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99841 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47129 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47310 * 119.99930 * 19 17 15 22 22 H 1.48505 * 109.47439 * 240.00125 * 19 17 15 23 23 O 1.34546 * 107.67618 * 359.72759 * 12 11 10 24 24 C 1.35657 * 109.32902 * 359.97438 * 8 7 6 25 25 C 1.35015 * 124.66693 * 16.65442 * 6 5 4 26 26 C 1.52336 * 122.80063 * 359.44509 * 25 6 5 27 27 H 1.09005 * 109.47533 * 299.90668 * 1 2 3 28 28 H 1.09003 * 109.47588 * 59.90865 * 1 2 3 29 29 H 1.09000 * 109.47078 * 179.90662 * 1 2 3 30 30 H 1.08998 * 109.55642 * 70.81643 * 4 2 1 31 31 H 1.08997 * 109.64013 * 310.56123 * 4 2 1 32 32 H 1.08995 * 109.59647 * 190.44503 * 5 4 2 33 33 H 1.08997 * 109.72310 * 70.05687 * 5 4 2 34 34 H 1.09000 * 109.46666 * 210.02145 * 13 12 11 35 35 H 1.08990 * 109.46908 * 330.02405 * 13 12 11 36 36 H 1.08993 * 109.47490 * 300.00177 * 14 13 12 37 37 H 1.09003 * 109.46794 * 60.00395 * 14 13 12 38 38 H 0.97001 * 119.99619 * 180.02562 * 18 17 15 39 39 H 1.08002 * 122.37189 * 179.97438 * 24 8 7 40 40 H 1.09005 * 109.78028 * 258.06758 * 26 25 6 41 41 H 1.09004 * 109.55417 * 137.69267 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2490 5 6 3.5490 -0.4890 1.3783 6 6 4.2052 -0.8006 0.0488 7 16 5.9257 -1.0742 -0.1883 8 6 5.6857 -1.3288 -1.9103 9 6 6.7473 -1.6346 -2.8809 10 7 6.5913 -1.8340 -4.1716 11 7 7.7375 -2.0727 -4.7050 12 6 8.6612 -2.0454 -3.7861 13 6 10.1344 -2.2814 -3.9989 14 6 10.8250 -0.9510 -4.3054 15 6 12.2981 -1.1871 -4.5187 16 1 12.7014 -2.1861 -4.4429 17 6 13.1310 -0.1277 -4.8097 18 7 12.6401 1.0891 -4.9006 19 14 14.9570 -0.4202 -5.0735 20 1 15.2542 -1.8668 -4.9169 21 1 15.3360 0.0172 -6.4411 22 1 15.7324 0.3561 -4.0728 23 8 8.0627 -1.7688 -2.6133 24 6 4.3677 -1.1990 -2.2040 25 6 3.5485 -0.9022 -1.1265 26 6 2.0406 -0.7229 -1.2476 27 1 -0.3634 0.5124 0.8908 28 1 -0.3634 0.5152 -0.8892 29 1 -0.3633 -1.0277 -0.0017 30 1 1.8448 -1.7920 1.1577 31 1 1.5342 -0.3339 2.1316 32 1 3.9561 -1.1434 2.1491 33 1 3.7379 0.5509 1.6445 34 1 10.5665 -2.7160 -3.0975 35 1 10.2756 -2.9653 -4.8357 36 1 10.3928 -0.5164 -5.2066 37 1 10.6838 -0.2671 -3.4684 38 1 13.2262 1.8343 -5.1057 39 1 3.9848 -1.3140 -3.2073 40 1 1.5585 -1.6972 -1.3284 41 1 1.8137 -0.1286 -2.1327 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261574460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:37 Heat of formation + Delta-G solvation = 34.886409 kcal Electronic energy + Delta-G solvation = -22731.601082 eV Core-core repulsion = 19317.688016 eV Total energy + Delta-G solvation = -3413.913066 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.74468 -39.65396 -36.24169 -35.79054 -34.41690 -32.60870 -32.08396 -30.76523 -28.64582 -26.93806 -25.73988 -24.67682 -23.29988 -22.67451 -22.14830 -20.88969 -20.32526 -18.54148 -17.79445 -17.09146 -16.55531 -16.21691 -15.64590 -15.10979 -14.75943 -14.57708 -14.55971 -14.02924 -13.89153 -13.44849 -13.24440 -13.02344 -12.65493 -12.50673 -12.44583 -12.27748 -12.08924 -11.83609 -11.58881 -11.45304 -11.42045 -11.06068 -11.01187 -10.88839 -10.80438 -10.68459 -10.63857 -10.15962 -10.09354 -9.49880 -9.30004 -8.61777 -8.47627 -8.20945 -6.11284 -4.16396 0.23285 1.17465 1.65201 1.67052 2.38373 2.45180 2.89356 3.26668 3.34223 3.37815 4.07740 4.24045 4.36099 4.39509 4.39662 4.68871 4.71514 4.83659 5.02639 5.07195 5.11378 5.25169 5.27735 5.30794 5.39492 5.42546 5.46507 5.49024 5.58815 5.62280 5.74323 5.75006 5.82509 5.89008 6.00699 6.09415 6.14557 6.18268 6.25216 6.57682 7.46007 7.53547 7.84005 8.18845 8.61037 8.88969 9.48648 11.00011 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029839 B = 0.002275 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.139978 B =12306.600809 C =12653.399321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.049 4.049 6 C -0.173 4.173 7 S 0.168 5.832 8 C -0.127 4.127 9 C 0.205 3.795 10 N -0.264 5.264 11 N -0.298 5.298 12 C 0.207 3.793 13 C -0.026 4.026 14 C 0.027 3.973 15 C -0.526 4.526 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.222 6.222 24 C -0.069 4.069 25 C -0.106 4.106 26 C -0.050 4.050 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.153 0.847 40 H 0.079 0.921 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.799 -3.558 14.415 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.088 4.088 6 C -0.292 4.292 7 S 0.437 5.563 8 C -0.246 4.246 9 C -0.004 4.004 10 N -0.113 5.113 11 N -0.145 5.145 12 C -0.001 4.001 13 C -0.065 4.065 14 C -0.011 4.011 15 C -0.564 4.564 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.102 6.102 24 C -0.103 4.103 25 C -0.118 4.118 26 C -0.089 4.089 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.170 0.830 40 H 0.097 0.903 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.942 -3.530 14.164 27.192 hybrid contribution 0.567 0.161 -0.111 0.600 sum -22.375 -3.369 14.053 26.636 Atomic orbital electron populations 1.21828 0.94698 1.01994 1.01933 1.21161 0.95662 0.99982 0.94452 0.90662 1.21646 0.93895 1.01283 0.98035 1.20369 0.94997 1.02269 0.91181 1.25199 0.96135 1.08360 0.99518 1.84393 1.04479 1.67916 0.99472 1.20864 0.92899 1.15488 0.95311 1.23844 0.80810 1.03221 0.92557 1.74762 1.18119 1.15194 1.03256 1.74402 0.94326 1.19408 1.26334 1.29022 1.00017 0.94201 0.76906 1.20808 0.78095 1.04006 1.03574 1.19188 0.95138 0.88831 0.97981 1.21096 0.91876 0.94279 1.49150 0.91935 1.25029 0.99195 0.95053 0.95054 1.69983 1.35617 0.99088 1.48213 0.86431 0.84682 0.78419 0.77856 1.19544 1.20863 1.20926 1.84924 1.19800 1.67993 1.37482 1.20385 0.89934 0.98986 1.01033 1.19403 0.97075 1.04337 0.90940 1.20613 0.88692 1.01168 0.98455 0.92517 0.92438 0.92524 0.91297 0.90933 0.90174 0.89836 0.89385 0.87725 0.95328 0.95991 0.92758 0.82981 0.90258 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.17 37.16 0.34 -0.36 16 2 C -0.09 -0.56 2.67 -90.57 -0.24 -0.80 16 3 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 4 C -0.11 -0.61 5.25 -26.58 -0.14 -0.75 16 5 C -0.05 -0.33 6.26 -27.41 -0.17 -0.51 16 6 C -0.17 -1.70 6.35 -35.06 -0.22 -1.92 16 7 S 0.17 2.04 23.28 -107.50 -2.50 -0.46 16 8 C -0.13 -1.88 6.43 -36.93 -0.24 -2.11 16 9 C 0.20 3.77 8.24 -14.11 -0.12 3.66 16 10 N -0.26 -5.31 12.23 31.95 0.39 -4.92 16 11 N -0.30 -6.42 12.21 32.59 0.40 -6.02 16 12 C 0.21 4.29 7.72 -12.92 -0.10 4.19 16 13 C -0.03 -0.53 5.78 -27.88 -0.16 -0.69 16 14 C 0.03 0.68 4.96 -27.88 -0.14 0.54 16 15 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 O -0.22 -4.38 10.90 3.36 0.04 -4.34 16 24 C -0.07 -0.86 9.92 -40.38 -0.40 -1.26 16 25 C -0.11 -1.07 5.76 -104.83 -0.60 -1.67 16 26 C -0.05 -0.36 5.43 -27.09 -0.15 -0.51 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.07 0.31 8.11 -51.93 -0.42 -0.11 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -31.65 359.25 -9.17 -40.82 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -5.88 Total: -5.55 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.75 Total: -15.30 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.53 Total: -36.72 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.50 Total: -0.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.65 -9.17 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261574460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.706 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds